Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05747 and MPMX19_05748 are separated by 315 nucleotides MPMX19_05748 and MPMX19_05749 overlap by 4 nucleotides
MPMX19_05747: MPMX19_05747 - Transcriptional regulatory protein DegU, at 468,041 to 468,763
_05747
MPMX19_05748: MPMX19_05748 - Response regulator SaeR, at 469,079 to 469,543
_05748
MPMX19_05749: MPMX19_05749 - Cyclic di-GMP phosphodiesterase response regulator RpfG, at 469,540 to 470,607
_05749
Position (kb) 469
470 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 468.601 kb on - strand, within MPMX19_05747 at 468.646 kb on + strand, within MPMX19_05747 at 468.647 kb on - strand, within MPMX19_05747 at 468.802 kb on + strand at 468.802 kb on + strand at 468.802 kb on + strand at 468.803 kb on - strand at 468.803 kb on - strand at 468.803 kb on - strand at 468.803 kb on - strand at 468.805 kb on + strand at 468.805 kb on + strand at 468.806 kb on - strand at 468.806 kb on - strand at 468.821 kb on + strand at 468.821 kb on + strand at 468.821 kb on + strand at 468.821 kb on + strand at 468.822 kb on - strand at 468.822 kb on - strand at 468.822 kb on - strand at 468.822 kb on - strand at 468.823 kb on + strand at 468.823 kb on + strand at 468.823 kb on + strand at 468.824 kb on - strand at 468.824 kb on - strand at 468.824 kb on - strand at 468.857 kb on + strand at 468.858 kb on - strand at 468.875 kb on + strand at 468.875 kb on + strand at 468.875 kb on + strand at 468.875 kb on + strand at 468.876 kb on - strand at 468.876 kb on - strand at 468.876 kb on - strand at 468.876 kb on - strand at 468.876 kb on - strand at 468.892 kb on + strand at 468.892 kb on + strand at 468.892 kb on + strand at 468.892 kb on + strand at 468.893 kb on - strand at 468.893 kb on - strand at 468.893 kb on - strand at 468.893 kb on - strand at 468.937 kb on + strand at 468.937 kb on + strand at 468.937 kb on + strand at 468.940 kb on + strand at 468.941 kb on - strand at 468.941 kb on - strand at 468.941 kb on - strand at 468.941 kb on - strand at 468.941 kb on - strand at 468.942 kb on - strand at 469.008 kb on + strand at 469.008 kb on + strand at 469.021 kb on - strand at 469.214 kb on + strand, within MPMX19_05748 at 469.214 kb on + strand, within MPMX19_05748 at 469.214 kb on + strand, within MPMX19_05748 at 469.215 kb on - strand, within MPMX19_05748 at 469.215 kb on - strand, within MPMX19_05748 at 469.215 kb on - strand, within MPMX19_05748 at 469.319 kb on + strand, within MPMX19_05748 at 469.536 kb on + strand at 469.536 kb on + strand at 469.536 kb on + strand at 469.536 kb on + strand at 469.536 kb on + strand at 469.536 kb on + strand at 470.026 kb on + strand, within MPMX19_05749 at 470.071 kb on + strand, within MPMX19_05749 at 470.072 kb on - strand, within MPMX19_05749 at 470.431 kb on + strand, within MPMX19_05749 at 470.431 kb on + strand, within MPMX19_05749 at 470.431 kb on + strand, within MPMX19_05749 at 470.431 kb on + strand, within MPMX19_05749 at 470.431 kb on + strand, within MPMX19_05749 at 470.432 kb on - strand, within MPMX19_05749 at 470.432 kb on - strand, within MPMX19_05749 at 470.432 kb on - strand, within MPMX19_05749 at 470.432 kb on - strand, within MPMX19_05749 at 470.432 kb on - strand, within MPMX19_05749 at 470.432 kb on - strand, within MPMX19_05749 at 470.432 kb on - strand, within MPMX19_05749 at 470.432 kb on - strand, within MPMX19_05749 at 470.432 kb on - strand, within MPMX19_05749 at 470.467 kb on + strand, within MPMX19_05749 at 470.467 kb on + strand, within MPMX19_05749 at 470.467 kb on + strand, within MPMX19_05749 at 470.467 kb on + strand, within MPMX19_05749 at 470.467 kb on + strand, within MPMX19_05749 at 470.467 kb on + strand, within MPMX19_05749 at 470.467 kb on + strand, within MPMX19_05749 at 470.467 kb on + strand, within MPMX19_05749 at 470.467 kb on + strand, within MPMX19_05749 at 470.467 kb on + strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749 at 470.468 kb on - strand, within MPMX19_05749
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 468,601 - MPMX19_05747 0.77 +0.7 468,646 + MPMX19_05747 0.84 -1.6 468,647 - MPMX19_05747 0.84 -0.9 468,802 + -1.4 468,802 + -0.1 468,802 + +1.6 468,803 - -0.4 468,803 - -0.5 468,803 - -0.9 468,803 - -0.0 468,805 + -1.2 468,805 + -0.6 468,806 - +1.4 468,806 - -0.7 468,821 + -1.6 468,821 + -0.9 468,821 + -1.1 468,821 + -0.4 468,822 - -0.9 468,822 - -0.5 468,822 - +0.6 468,822 - -0.4 468,823 + -0.0 468,823 + +2.8 468,823 + -3.1 468,824 - -0.7 468,824 - +0.9 468,824 - +1.6 468,857 + -0.1 468,858 - +0.2 468,875 + -0.1 468,875 + -1.6 468,875 + -0.2 468,875 + -0.9 468,876 - -1.7 468,876 - +0.2 468,876 - -0.4 468,876 - -0.2 468,876 - +0.6 468,892 + +1.3 468,892 + -1.0 468,892 + +0.8 468,892 + -0.8 468,893 - -1.3 468,893 - -1.7 468,893 - -0.4 468,893 - +0.3 468,937 + +0.1 468,937 + -1.0 468,937 + -0.1 468,940 + -0.4 468,941 - -1.4 468,941 - +0.5 468,941 - -0.4 468,941 - -1.9 468,941 - +0.2 468,942 - +1.6 469,008 + -0.1 469,008 + -0.2 469,021 - -0.9 469,214 + MPMX19_05748 0.29 -0.7 469,214 + MPMX19_05748 0.29 -1.3 469,214 + MPMX19_05748 0.29 -0.9 469,215 - MPMX19_05748 0.29 -1.5 469,215 - MPMX19_05748 0.29 -1.3 469,215 - MPMX19_05748 0.29 +0.4 469,319 + MPMX19_05748 0.52 -0.5 469,536 + -1.4 469,536 + -1.8 469,536 + +1.0 469,536 + -1.9 469,536 + -1.2 469,536 + -1.0 470,026 + MPMX19_05749 0.46 -0.7 470,071 + MPMX19_05749 0.50 -0.6 470,072 - MPMX19_05749 0.50 -1.1 470,431 + MPMX19_05749 0.83 +0.3 470,431 + MPMX19_05749 0.83 -0.6 470,431 + MPMX19_05749 0.83 -0.2 470,431 + MPMX19_05749 0.83 +0.7 470,431 + MPMX19_05749 0.83 -0.1 470,432 - MPMX19_05749 0.84 +1.2 470,432 - MPMX19_05749 0.84 -0.7 470,432 - MPMX19_05749 0.84 -0.9 470,432 - MPMX19_05749 0.84 -0.7 470,432 - MPMX19_05749 0.84 +2.4 470,432 - MPMX19_05749 0.84 -0.1 470,432 - MPMX19_05749 0.84 -1.6 470,432 - MPMX19_05749 0.84 -3.1 470,432 - MPMX19_05749 0.84 -0.6 470,467 + MPMX19_05749 0.87 -2.1 470,467 + MPMX19_05749 0.87 +0.1 470,467 + MPMX19_05749 0.87 +0.5 470,467 + MPMX19_05749 0.87 +0.1 470,467 + MPMX19_05749 0.87 +0.5 470,467 + MPMX19_05749 0.87 +0.0 470,467 + MPMX19_05749 0.87 -0.1 470,467 + MPMX19_05749 0.87 +0.7 470,467 + MPMX19_05749 0.87 -0.6 470,467 + MPMX19_05749 0.87 -1.9 470,468 - MPMX19_05749 0.87 -0.7 470,468 - MPMX19_05749 0.87 -0.4 470,468 - MPMX19_05749 0.87 +0.9 470,468 - MPMX19_05749 0.87 +1.3 470,468 - MPMX19_05749 0.87 -1.4 470,468 - MPMX19_05749 0.87 -0.2 470,468 - MPMX19_05749 0.87 +0.3 470,468 - MPMX19_05749 0.87 -1.0 470,468 - MPMX19_05749 0.87 -0.0 470,468 - MPMX19_05749 0.87 -0.7 470,468 - MPMX19_05749 0.87 -2.6 470,468 - MPMX19_05749 0.87 +0.2 470,468 - MPMX19_05749 0.87 -0.6 470,468 - MPMX19_05749 0.87 -0.8 470,468 - MPMX19_05749 0.87 +0.9 470,468 - MPMX19_05749 0.87 -1.3 470,468 - MPMX19_05749 0.87 -0.4 470,468 - MPMX19_05749 0.87 +0.4 470,468 - MPMX19_05749 0.87 -0.4
Or see this region's nucleotide sequence