Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05373 and MPMX19_05374 are separated by 126 nucleotides MPMX19_05374 and MPMX19_05375 are separated by 27 nucleotides MPMX19_05375 and MPMX19_05376 are separated by 159 nucleotides
MPMX19_05373: MPMX19_05373 - hypothetical protein, at 45,843 to 46,625
_05373
MPMX19_05374: MPMX19_05374 - hypothetical protein, at 46,752 to 48,593
_05374
MPMX19_05375: MPMX19_05375 - hypothetical protein, at 48,621 to 49,046
_05375
MPMX19_05376: MPMX19_05376 - hypothetical protein, at 49,206 to 49,976
_05376
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 45.804 kb on + strand at 45.805 kb on - strand at 45.805 kb on - strand at 46.635 kb on + strand at 46.656 kb on - strand at 46.677 kb on + strand at 46.677 kb on + strand at 46.677 kb on + strand at 46.677 kb on + strand at 46.677 kb on + strand at 46.677 kb on + strand at 46.678 kb on - strand at 46.678 kb on - strand at 46.678 kb on - strand at 46.678 kb on - strand at 46.678 kb on - strand at 46.686 kb on - strand at 46.686 kb on - strand at 46.686 kb on - strand at 46.686 kb on - strand at 46.686 kb on - strand at 46.782 kb on - strand at 46.788 kb on + strand at 46.788 kb on + strand at 46.996 kb on - strand, within MPMX19_05374 at 46.996 kb on - strand, within MPMX19_05374 at 47.052 kb on + strand, within MPMX19_05374 at 47.052 kb on + strand, within MPMX19_05374 at 47.053 kb on - strand, within MPMX19_05374 at 47.137 kb on - strand, within MPMX19_05374 at 47.373 kb on + strand, within MPMX19_05374 at 47.373 kb on + strand, within MPMX19_05374 at 47.373 kb on + strand, within MPMX19_05374 at 47.374 kb on - strand, within MPMX19_05374 at 47.374 kb on - strand, within MPMX19_05374 at 47.413 kb on - strand, within MPMX19_05374 at 47.413 kb on - strand, within MPMX19_05374 at 47.422 kb on - strand, within MPMX19_05374 at 47.442 kb on + strand, within MPMX19_05374 at 47.442 kb on + strand, within MPMX19_05374 at 47.442 kb on + strand, within MPMX19_05374 at 47.442 kb on + strand, within MPMX19_05374 at 47.442 kb on + strand, within MPMX19_05374 at 47.443 kb on - strand, within MPMX19_05374 at 47.443 kb on - strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.992 kb on - strand, within MPMX19_05374 at 47.992 kb on - strand, within MPMX19_05374 at 47.992 kb on - strand, within MPMX19_05374 at 47.992 kb on - strand, within MPMX19_05374 at 47.992 kb on - strand, within MPMX19_05374 at 47.992 kb on - strand, within MPMX19_05374 at 47.992 kb on - strand, within MPMX19_05374 at 48.154 kb on - strand, within MPMX19_05374 at 48.154 kb on - strand, within MPMX19_05374 at 48.229 kb on - strand, within MPMX19_05374 at 48.229 kb on - strand, within MPMX19_05374 at 48.229 kb on - strand, within MPMX19_05374 at 48.229 kb on - strand, within MPMX19_05374 at 48.229 kb on - strand, within MPMX19_05374 at 48.345 kb on + strand, within MPMX19_05374 at 48.345 kb on + strand, within MPMX19_05374 at 48.345 kb on + strand, within MPMX19_05374 at 48.346 kb on - strand, within MPMX19_05374 at 48.453 kb on + strand at 48.454 kb on - strand at 48.454 kb on - strand at 48.454 kb on - strand at 48.454 kb on - strand at 48.454 kb on - strand at 48.454 kb on - strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.592 kb on - strand at 48.592 kb on - strand at 48.592 kb on - strand at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.730 kb on - strand, within MPMX19_05375 at 48.730 kb on - strand, within MPMX19_05375 at 48.730 kb on - strand, within MPMX19_05375 at 48.730 kb on - strand, within MPMX19_05375 at 48.730 kb on - strand, within MPMX19_05375 at 48.730 kb on - strand, within MPMX19_05375 at 48.730 kb on - strand, within MPMX19_05375 at 48.731 kb on + strand, within MPMX19_05375 at 49.095 kb on + strand at 49.095 kb on + strand at 49.096 kb on - strand at 49.096 kb on - strand at 49.229 kb on + strand at 49.229 kb on + strand at 49.229 kb on + strand at 49.230 kb on - strand at 49.230 kb on - strand at 49.230 kb on - strand at 49.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 45,804 + +0.7 45,805 - -1.5 45,805 - -0.4 46,635 + -0.3 46,656 - -1.0 46,677 + -0.3 46,677 + -1.4 46,677 + +0.2 46,677 + +0.4 46,677 + -0.4 46,677 + -0.7 46,678 - +0.5 46,678 - -2.1 46,678 - -1.4 46,678 - +0.9 46,678 - +0.0 46,686 - -0.5 46,686 - -0.7 46,686 - +0.3 46,686 - +0.2 46,686 - -0.6 46,782 - -1.1 46,788 + -1.1 46,788 + -0.7 46,996 - MPMX19_05374 0.13 -1.5 46,996 - MPMX19_05374 0.13 -0.4 47,052 + MPMX19_05374 0.16 +0.0 47,052 + MPMX19_05374 0.16 -1.2 47,053 - MPMX19_05374 0.16 -1.4 47,137 - MPMX19_05374 0.21 -0.4 47,373 + MPMX19_05374 0.34 +0.0 47,373 + MPMX19_05374 0.34 +0.0 47,373 + MPMX19_05374 0.34 -1.4 47,374 - MPMX19_05374 0.34 -1.7 47,374 - MPMX19_05374 0.34 -1.7 47,413 - MPMX19_05374 0.36 -1.8 47,413 - MPMX19_05374 0.36 +0.3 47,422 - MPMX19_05374 0.36 +1.4 47,442 + MPMX19_05374 0.37 -0.6 47,442 + MPMX19_05374 0.37 +0.8 47,442 + MPMX19_05374 0.37 -0.3 47,442 + MPMX19_05374 0.37 -1.3 47,442 + MPMX19_05374 0.37 -0.1 47,443 - MPMX19_05374 0.38 +1.0 47,443 - MPMX19_05374 0.38 +0.2 47,961 + MPMX19_05374 0.66 +1.6 47,961 + MPMX19_05374 0.66 -1.7 47,961 + MPMX19_05374 0.66 -0.6 47,961 + MPMX19_05374 0.66 -0.6 47,961 + MPMX19_05374 0.66 -2.9 47,961 + MPMX19_05374 0.66 -0.4 47,961 + MPMX19_05374 0.66 -0.2 47,961 + MPMX19_05374 0.66 -1.4 47,961 + MPMX19_05374 0.66 +1.0 47,961 + MPMX19_05374 0.66 -1.0 47,961 + MPMX19_05374 0.66 +0.0 47,961 + MPMX19_05374 0.66 +0.0 47,961 + MPMX19_05374 0.66 +0.6 47,961 + MPMX19_05374 0.66 -0.1 47,961 + MPMX19_05374 0.66 -1.0 47,961 + MPMX19_05374 0.66 -0.8 47,961 + MPMX19_05374 0.66 -2.1 47,961 + MPMX19_05374 0.66 -1.4 47,961 + MPMX19_05374 0.66 -0.8 47,961 + MPMX19_05374 0.66 +0.9 47,961 + MPMX19_05374 0.66 -0.3 47,962 - MPMX19_05374 0.66 -0.4 47,962 - MPMX19_05374 0.66 -0.4 47,962 - MPMX19_05374 0.66 -1.8 47,962 - MPMX19_05374 0.66 -0.6 47,962 - MPMX19_05374 0.66 -0.3 47,962 - MPMX19_05374 0.66 -0.5 47,962 - MPMX19_05374 0.66 -0.2 47,962 - MPMX19_05374 0.66 -2.2 47,962 - MPMX19_05374 0.66 -0.4 47,962 - MPMX19_05374 0.66 -1.2 47,962 - MPMX19_05374 0.66 -1.3 47,962 - MPMX19_05374 0.66 -1.2 47,962 - MPMX19_05374 0.66 +1.1 47,962 - MPMX19_05374 0.66 -0.6 47,991 + MPMX19_05374 0.67 -0.1 47,991 + MPMX19_05374 0.67 +1.6 47,991 + MPMX19_05374 0.67 -0.9 47,991 + MPMX19_05374 0.67 -0.2 47,991 + MPMX19_05374 0.67 +1.6 47,991 + MPMX19_05374 0.67 +1.9 47,991 + MPMX19_05374 0.67 +0.2 47,991 + MPMX19_05374 0.67 -0.4 47,992 - MPMX19_05374 0.67 +0.2 47,992 - MPMX19_05374 0.67 -1.6 47,992 - MPMX19_05374 0.67 -1.0 47,992 - MPMX19_05374 0.67 +1.1 47,992 - MPMX19_05374 0.67 +1.3 47,992 - MPMX19_05374 0.67 -1.2 47,992 - MPMX19_05374 0.67 -1.2 48,154 - MPMX19_05374 0.76 +1.0 48,154 - MPMX19_05374 0.76 -0.3 48,229 - MPMX19_05374 0.80 -1.0 48,229 - MPMX19_05374 0.80 -1.6 48,229 - MPMX19_05374 0.80 -0.2 48,229 - MPMX19_05374 0.80 -1.9 48,229 - MPMX19_05374 0.80 -0.7 48,345 + MPMX19_05374 0.86 -2.6 48,345 + MPMX19_05374 0.86 -0.7 48,345 + MPMX19_05374 0.86 -0.5 48,346 - MPMX19_05374 0.87 -2.1 48,453 + +0.2 48,454 - -0.5 48,454 - -2.0 48,454 - -0.9 48,454 - -1.7 48,454 - -0.8 48,454 - -0.1 48,498 + -0.8 48,498 + -0.2 48,498 + -0.4 48,498 + -1.1 48,498 + +0.6 48,498 + -1.7 48,498 + -0.8 48,498 + +0.0 48,498 + +0.2 48,498 + +0.2 48,498 + -0.3 48,498 + -0.6 48,498 + -0.4 48,498 + +1.2 48,498 + -1.5 48,499 - -1.4 48,499 - +0.6 48,499 - -0.7 48,499 - +0.1 48,499 - -1.3 48,499 - -1.6 48,499 - -1.4 48,499 - -1.3 48,499 - -0.3 48,499 - +0.2 48,499 - +0.0 48,499 - +0.0 48,499 - -0.9 48,499 - -0.0 48,499 - -0.6 48,499 - +0.2 48,500 + +0.0 48,500 + -0.6 48,500 + +0.0 48,500 + +1.8 48,500 + +0.5 48,500 + -1.1 48,500 + -1.8 48,500 + -0.3 48,500 + -2.0 48,500 + +0.4 48,500 + -1.6 48,500 + -1.2 48,500 + -0.2 48,500 + -0.1 48,500 + +0.4 48,500 + +0.0 48,500 + +0.7 48,500 + -0.4 48,501 - -0.4 48,501 - +1.6 48,501 - -1.4 48,501 - -1.7 48,501 - -2.0 48,501 - -2.1 48,501 - -0.8 48,501 - +0.0 48,501 - +0.2 48,501 - +1.2 48,501 - +0.2 48,501 - -1.1 48,501 - +1.4 48,501 - -1.1 48,501 - -0.4 48,501 - -0.6 48,501 - +0.3 48,501 - +0.7 48,501 - -1.0 48,501 - -2.0 48,501 - -0.1 48,501 - -0.7 48,501 - +0.2 48,501 - +0.0 48,501 - -0.8 48,592 - +0.6 48,592 - +0.1 48,592 - -1.7 48,729 + MPMX19_05375 0.25 -0.3 48,729 + MPMX19_05375 0.25 -0.4 48,729 + MPMX19_05375 0.25 +0.4 48,729 + MPMX19_05375 0.25 +0.3 48,729 + MPMX19_05375 0.25 -0.1 48,729 + MPMX19_05375 0.25 -0.3 48,729 + MPMX19_05375 0.25 +0.6 48,729 + MPMX19_05375 0.25 -0.9 48,729 + MPMX19_05375 0.25 +0.6 48,730 - MPMX19_05375 0.26 +0.3 48,730 - MPMX19_05375 0.26 +0.4 48,730 - MPMX19_05375 0.26 -1.2 48,730 - MPMX19_05375 0.26 +0.2 48,730 - MPMX19_05375 0.26 +0.2 48,730 - MPMX19_05375 0.26 +1.8 48,730 - MPMX19_05375 0.26 +0.1 48,731 + MPMX19_05375 0.26 +0.0 49,095 + -0.6 49,095 + +0.7 49,096 - -0.3 49,096 - -0.1 49,229 + +0.0 49,229 + +0.1 49,229 + -0.6 49,230 - +0.5 49,230 - -0.8 49,230 - +0.4 49,230 - -2.2
Or see this region's nucleotide sequence