Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05364

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05363 and MPMX19_05364 are separated by 6 nucleotidesMPMX19_05364 and MPMX19_05365 are separated by 17 nucleotidesMPMX19_05365 and MPMX19_05366 are separated by 2 nucleotides MPMX19_05363: MPMX19_05363 - D-beta-hydroxybutyrate dehydrogenase, at 38,370 to 39,158 _05363 MPMX19_05364: MPMX19_05364 - Acetate CoA-transferase subunit beta, at 39,165 to 39,818 _05364 MPMX19_05365: MPMX19_05365 - Acetate CoA-transferase subunit alpha, at 39,836 to 40,495 _05365 MPMX19_05366: MPMX19_05366 - hypothetical protein, at 40,498 to 41,889 _05366 Position (kb) 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 38.243 kb on - strandat 38.304 kb on + strandat 38.304 kb on + strandat 38.344 kb on + strandat 38.344 kb on + strandat 38.344 kb on + strandat 38.345 kb on - strandat 38.345 kb on - strandat 38.345 kb on - strandat 38.345 kb on - strandat 38.372 kb on - strandat 38.372 kb on - strandat 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.789 kb on + strand, within MPMX19_05363at 38.789 kb on + strand, within MPMX19_05363at 38.911 kb on + strand, within MPMX19_05363at 38.911 kb on + strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 39.031 kb on + strand, within MPMX19_05363at 39.031 kb on + strand, within MPMX19_05363at 39.031 kb on + strand, within MPMX19_05363at 39.031 kb on + strand, within MPMX19_05363at 39.032 kb on - strand, within MPMX19_05363at 39.032 kb on - strand, within MPMX19_05363at 39.166 kb on + strandat 39.166 kb on + strandat 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.827 kb on - strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.996 kb on + strand, within MPMX19_05365at 39.996 kb on + strand, within MPMX19_05365at 39.996 kb on + strand, within MPMX19_05365at 39.996 kb on + strand, within MPMX19_05365at 39.997 kb on - strand, within MPMX19_05365at 39.997 kb on - strand, within MPMX19_05365at 39.997 kb on - strand, within MPMX19_05365at 39.997 kb on - strand, within MPMX19_05365at 40.011 kb on + strand, within MPMX19_05365at 40.012 kb on - strand, within MPMX19_05365at 40.012 kb on - strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.517 kb on + strandat 40.517 kb on + strandat 40.517 kb on + strandat 40.517 kb on + strandat 40.517 kb on + strandat 40.517 kb on + strandat 40.517 kb on + strandat 40.518 kb on - strandat 40.518 kb on - strandat 40.518 kb on - strandat 40.518 kb on - strandat 40.518 kb on - strandat 40.518 kb on - strandat 40.520 kb on + strandat 40.520 kb on + strandat 40.520 kb on + strandat 40.520 kb on + strandat 40.520 kb on + strandat 40.520 kb on + strandat 40.521 kb on - strandat 40.521 kb on - strandat 40.521 kb on - strandat 40.521 kb on - strandat 40.521 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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38,243 - -1.0
38,304 + +0.9
38,304 + -0.0
38,344 + -0.8
38,344 + +0.6
38,344 + +2.4
38,345 - -0.5
38,345 - -1.2
38,345 - +0.2
38,345 - -1.6
38,372 - -0.2
38,372 - -1.4
38,689 + MPMX19_05363 0.40 -1.4
38,689 + MPMX19_05363 0.40 -0.2
38,689 + MPMX19_05363 0.40 +0.2
38,689 + MPMX19_05363 0.40 -0.1
38,689 + MPMX19_05363 0.40 +0.5
38,689 + MPMX19_05363 0.40 -1.2
38,689 + MPMX19_05363 0.40 -1.2
38,689 + MPMX19_05363 0.40 +0.7
38,689 + MPMX19_05363 0.40 +0.2
38,689 + MPMX19_05363 0.40 -0.8
38,689 + MPMX19_05363 0.40 -0.4
38,689 + MPMX19_05363 0.40 +0.4
38,689 + MPMX19_05363 0.40 -0.7
38,690 - MPMX19_05363 0.41 +0.6
38,690 - MPMX19_05363 0.41 +1.2
38,690 - MPMX19_05363 0.41 -2.3
38,690 - MPMX19_05363 0.41 -0.3
38,690 - MPMX19_05363 0.41 -1.5
38,690 - MPMX19_05363 0.41 -0.5
38,690 - MPMX19_05363 0.41 +1.3
38,690 - MPMX19_05363 0.41 +0.3
38,690 - MPMX19_05363 0.41 -0.4
38,690 - MPMX19_05363 0.41 -1.3
38,690 - MPMX19_05363 0.41 -0.3
38,789 + MPMX19_05363 0.53 -2.0
38,789 + MPMX19_05363 0.53 -0.7
38,911 + MPMX19_05363 0.69 +0.6
38,911 + MPMX19_05363 0.69 -3.4
38,912 - MPMX19_05363 0.69 -0.2
38,912 - MPMX19_05363 0.69 -1.3
38,912 - MPMX19_05363 0.69 +0.6
38,912 - MPMX19_05363 0.69 +0.5
38,912 - MPMX19_05363 0.69 -1.1
38,912 - MPMX19_05363 0.69 -1.8
38,912 - MPMX19_05363 0.69 +0.0
38,912 - MPMX19_05363 0.69 -0.8
39,031 + MPMX19_05363 0.84 -0.1
39,031 + MPMX19_05363 0.84 -1.0
39,031 + MPMX19_05363 0.84 -0.4
39,031 + MPMX19_05363 0.84 -0.0
39,032 - MPMX19_05363 0.84 +0.2
39,032 - MPMX19_05363 0.84 +0.0
39,166 + +0.0
39,166 + +1.0
39,718 + MPMX19_05364 0.85 +0.4
39,718 + MPMX19_05364 0.85 -0.3
39,718 + MPMX19_05364 0.85 +0.0
39,718 + MPMX19_05364 0.85 +0.2
39,718 + MPMX19_05364 0.85 +1.4
39,718 + MPMX19_05364 0.85 -0.3
39,718 + MPMX19_05364 0.85 +0.3
39,718 + MPMX19_05364 0.85 -0.6
39,718 + MPMX19_05364 0.85 +1.1
39,718 + MPMX19_05364 0.85 +0.5
39,719 - MPMX19_05364 0.85 -1.3
39,719 - MPMX19_05364 0.85 +0.1
39,719 - MPMX19_05364 0.85 -0.6
39,719 - MPMX19_05364 0.85 -0.7
39,719 - MPMX19_05364 0.85 -0.1
39,719 - MPMX19_05364 0.85 -0.5
39,827 - -0.1
39,861 + +0.5
39,861 + -0.5
39,861 + +0.3
39,861 + -1.2
39,861 + -0.6
39,861 + -0.4
39,861 + -1.0
39,861 + -0.2
39,861 + -0.7
39,862 - -0.4
39,862 - -1.0
39,862 - -2.4
39,862 - -2.0
39,862 - -1.3
39,862 - -1.1
39,862 - -1.1
39,862 - -2.8
39,862 - +0.2
39,862 - -0.8
39,862 - -0.6
39,862 - -1.3
39,862 - -2.5
39,862 - -2.1
39,862 - +0.6
39,996 + MPMX19_05365 0.24 +0.2
39,996 + MPMX19_05365 0.24 -0.8
39,996 + MPMX19_05365 0.24 -1.0
39,996 + MPMX19_05365 0.24 -0.7
39,997 - MPMX19_05365 0.24 +0.0
39,997 - MPMX19_05365 0.24 +0.3
39,997 - MPMX19_05365 0.24 -0.1
39,997 - MPMX19_05365 0.24 -0.7
40,011 + MPMX19_05365 0.27 +0.2
40,012 - MPMX19_05365 0.27 +0.3
40,012 - MPMX19_05365 0.27 -0.2
40,074 + MPMX19_05365 0.36 -0.9
40,074 + MPMX19_05365 0.36 -1.5
40,074 + MPMX19_05365 0.36 +0.8
40,074 + MPMX19_05365 0.36 -0.4
40,074 + MPMX19_05365 0.36 -0.4
40,074 + MPMX19_05365 0.36 -1.2
40,074 + MPMX19_05365 0.36 -2.0
40,074 + MPMX19_05365 0.36 -0.6
40,074 + MPMX19_05365 0.36 +0.0
40,074 + MPMX19_05365 0.36 +0.0
40,074 + MPMX19_05365 0.36 +2.6
40,074 + MPMX19_05365 0.36 +0.9
40,075 - MPMX19_05365 0.36 +1.1
40,075 - MPMX19_05365 0.36 +1.4
40,075 - MPMX19_05365 0.36 -0.7
40,075 - MPMX19_05365 0.36 -1.2
40,075 - MPMX19_05365 0.36 +0.6
40,075 - MPMX19_05365 0.36 +0.9
40,075 - MPMX19_05365 0.36 -0.9
40,075 - MPMX19_05365 0.36 +0.6
40,075 - MPMX19_05365 0.36 -1.8
40,075 - MPMX19_05365 0.36 -0.1
40,075 - MPMX19_05365 0.36 +0.2
40,517 + -1.4
40,517 + -1.0
40,517 + +0.8
40,517 + -0.6
40,517 + -0.8
40,517 + -0.3
40,517 + +0.2
40,518 - -0.6
40,518 - -0.1
40,518 - -0.3
40,518 - +0.5
40,518 - -0.2
40,518 - +0.2
40,520 + -1.1
40,520 + +0.1
40,520 + -0.3
40,520 + -0.5
40,520 + -1.4
40,520 + +0.7
40,521 - -0.9
40,521 - -0.3
40,521 - -1.0
40,521 - +0.3
40,521 - -0.9

Or see this region's nucleotide sequence