Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05193 and MPMX19_05194 are separated by 41 nucleotides MPMX19_05194 and MPMX19_05195 overlap by 4 nucleotides MPMX19_05195 and MPMX19_05196 are separated by 57 nucleotides MPMX19_05196 and MPMX19_05197 are separated by 51 nucleotides
MPMX19_05193: MPMX19_05193 - Taurine-binding periplasmic protein, at 696,163 to 697,179
_05193
MPMX19_05194: MPMX19_05194 - Taurine import ATP-binding protein TauB, at 697,221 to 698,024
_05194
MPMX19_05195: MPMX19_05195 - Putative aliphatic sulfonates transport permease protein SsuC, at 698,021 to 698,872
_05195
MPMX19_05196: MPMX19_05196 - Alpha-ketoglutarate-dependent taurine dioxygenase, at 698,930 to 699,781
_05196
MPMX19_05197: MPMX19_05197 - Inducible ornithine decarboxylase, at 699,833 to 702,193
_05197
Position (kb) 698
699 Strain fitness (log2 ratio) -2
-1
0
1 at 697.084 kb on - strand at 697.159 kb on + strand at 697.159 kb on + strand at 697.159 kb on + strand at 697.159 kb on + strand at 697.159 kb on + strand at 697.177 kb on + strand at 697.953 kb on + strand at 697.953 kb on + strand at 697.953 kb on + strand at 697.953 kb on + strand at 697.953 kb on + strand at 697.953 kb on + strand at 697.954 kb on - strand at 697.954 kb on - strand at 697.954 kb on - strand at 697.954 kb on - strand at 698.259 kb on - strand, within MPMX19_05195 at 698.259 kb on - strand, within MPMX19_05195 at 698.259 kb on - strand, within MPMX19_05195 at 698.436 kb on - strand, within MPMX19_05195 at 698.436 kb on - strand, within MPMX19_05195 at 698.436 kb on - strand, within MPMX19_05195 at 698.436 kb on - strand, within MPMX19_05195 at 698.436 kb on - strand, within MPMX19_05195 at 698.436 kb on - strand, within MPMX19_05195 at 698.436 kb on - strand, within MPMX19_05195 at 698.436 kb on - strand, within MPMX19_05195 at 698.907 kb on + strand at 698.908 kb on - strand at 698.908 kb on - strand at 698.908 kb on - strand at 698.908 kb on - strand at 699.072 kb on + strand, within MPMX19_05196 at 699.072 kb on + strand, within MPMX19_05196 at 699.072 kb on + strand, within MPMX19_05196 at 699.072 kb on + strand, within MPMX19_05196 at 699.073 kb on - strand, within MPMX19_05196 at 699.073 kb on - strand, within MPMX19_05196 at 699.073 kb on - strand, within MPMX19_05196 at 699.073 kb on - strand, within MPMX19_05196 at 699.073 kb on - strand, within MPMX19_05196 at 699.344 kb on + strand, within MPMX19_05196 at 699.344 kb on + strand, within MPMX19_05196 at 699.407 kb on - strand, within MPMX19_05196 at 699.617 kb on + strand, within MPMX19_05196 at 699.617 kb on + strand, within MPMX19_05196 at 699.618 kb on - strand, within MPMX19_05196 at 699.707 kb on + strand at 699.707 kb on + strand at 699.708 kb on - strand at 699.708 kb on - strand at 699.776 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.861 kb on + strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.862 kb on - strand at 699.867 kb on + strand at 699.867 kb on + strand at 699.867 kb on + strand at 699.867 kb on + strand at 699.867 kb on + strand at 699.867 kb on + strand at 699.868 kb on - strand at 699.868 kb on - strand at 699.868 kb on - strand at 699.868 kb on - strand at 699.868 kb on - strand at 699.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 697,084 - -0.5 697,159 + -0.5 697,159 + +0.2 697,159 + -1.8 697,159 + -0.7 697,159 + -1.7 697,177 + -0.8 697,953 + -0.3 697,953 + -0.3 697,953 + -0.6 697,953 + -0.2 697,953 + -1.9 697,953 + +0.1 697,954 - +0.2 697,954 - -1.1 697,954 - -0.3 697,954 - -1.2 698,259 - MPMX19_05195 0.28 -0.1 698,259 - MPMX19_05195 0.28 -2.0 698,259 - MPMX19_05195 0.28 +0.2 698,436 - MPMX19_05195 0.49 -0.5 698,436 - MPMX19_05195 0.49 +0.3 698,436 - MPMX19_05195 0.49 +1.2 698,436 - MPMX19_05195 0.49 -0.1 698,436 - MPMX19_05195 0.49 -0.1 698,436 - MPMX19_05195 0.49 -0.2 698,436 - MPMX19_05195 0.49 +0.1 698,436 - MPMX19_05195 0.49 +1.0 698,907 + -0.8 698,908 - +0.4 698,908 - -0.4 698,908 - -1.9 698,908 - -0.7 699,072 + MPMX19_05196 0.17 -1.8 699,072 + MPMX19_05196 0.17 -0.1 699,072 + MPMX19_05196 0.17 -0.5 699,072 + MPMX19_05196 0.17 -2.4 699,073 - MPMX19_05196 0.17 -0.4 699,073 - MPMX19_05196 0.17 +1.0 699,073 - MPMX19_05196 0.17 +0.1 699,073 - MPMX19_05196 0.17 -0.3 699,073 - MPMX19_05196 0.17 -0.3 699,344 + MPMX19_05196 0.49 -0.2 699,344 + MPMX19_05196 0.49 +0.6 699,407 - MPMX19_05196 0.56 -0.4 699,617 + MPMX19_05196 0.81 -0.1 699,617 + MPMX19_05196 0.81 -0.1 699,618 - MPMX19_05196 0.81 +0.5 699,707 + +0.6 699,707 + -1.5 699,708 - +0.2 699,708 - +1.1 699,776 + -1.3 699,861 + -0.2 699,861 + -1.4 699,861 + -0.9 699,861 + -0.5 699,861 + +0.2 699,861 + -1.1 699,861 + -0.5 699,861 + -1.3 699,861 + +0.4 699,861 + -0.9 699,861 + -0.8 699,861 + +0.0 699,861 + -1.8 699,861 + -2.5 699,861 + -0.8 699,861 + -2.1 699,861 + +0.5 699,861 + -1.5 699,861 + +0.1 699,861 + -2.1 699,861 + -0.2 699,861 + +0.4 699,861 + -0.5 699,861 + -2.3 699,861 + -0.2 699,861 + +1.2 699,861 + -1.0 699,862 - -0.1 699,862 - -2.3 699,862 - -0.3 699,862 - +0.5 699,862 - +1.0 699,862 - +0.9 699,862 - -0.3 699,862 - -0.4 699,862 - +0.2 699,862 - -1.4 699,862 - -0.5 699,862 - +0.1 699,862 - -0.4 699,862 - -0.2 699,862 - -0.3 699,862 - -0.9 699,867 + -1.8 699,867 + +0.9 699,867 + -0.3 699,867 + -0.8 699,867 + -0.1 699,867 + -0.8 699,868 - +0.3 699,868 - +0.5 699,868 - -0.4 699,868 - -1.3 699,868 - +0.5 699,868 - -0.1
Or see this region's nucleotide sequence