Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05167

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05166 and MPMX19_05167 are separated by 146 nucleotidesMPMX19_05167 and MPMX19_05168 overlap by 4 nucleotides MPMX19_05166: MPMX19_05166 - Metal-pseudopaline receptor CntO, at 666,785 to 668,959 _05166 MPMX19_05167: MPMX19_05167 - hypothetical protein, at 669,106 to 669,939 _05167 MPMX19_05168: MPMX19_05168 - Hemin transport system permease protein HmuU, at 669,936 to 670,979 _05168 Position (kb) 669 670Strain fitness (log2 ratio) -2 -1 0 1at 668.127 kb on + strand, within MPMX19_05166at 668.127 kb on + strand, within MPMX19_05166at 668.128 kb on - strand, within MPMX19_05166at 668.128 kb on - strand, within MPMX19_05166at 668.152 kb on - strand, within MPMX19_05166at 668.152 kb on - strand, within MPMX19_05166at 668.281 kb on - strand, within MPMX19_05166at 668.430 kb on + strand, within MPMX19_05166at 668.431 kb on - strand, within MPMX19_05166at 668.431 kb on - strand, within MPMX19_05166at 668.517 kb on + strand, within MPMX19_05166at 668.517 kb on + strand, within MPMX19_05166at 668.517 kb on + strand, within MPMX19_05166at 668.517 kb on + strand, within MPMX19_05166at 668.517 kb on + strand, within MPMX19_05166at 668.517 kb on + strand, within MPMX19_05166at 668.517 kb on + strand, within MPMX19_05166at 668.518 kb on - strand, within MPMX19_05166at 668.518 kb on - strand, within MPMX19_05166at 668.518 kb on - strand, within MPMX19_05166at 668.518 kb on - strand, within MPMX19_05166at 668.518 kb on - strand, within MPMX19_05166at 668.518 kb on - strand, within MPMX19_05166at 668.518 kb on - strand, within MPMX19_05166at 668.535 kb on + strand, within MPMX19_05166at 668.535 kb on + strand, within MPMX19_05166at 668.536 kb on - strand, within MPMX19_05166at 668.693 kb on + strand, within MPMX19_05166at 668.694 kb on - strand, within MPMX19_05166at 668.694 kb on - strand, within MPMX19_05166at 668.694 kb on - strand, within MPMX19_05166at 668.694 kb on - strand, within MPMX19_05166at 668.946 kb on + strandat 669.236 kb on + strand, within MPMX19_05167at 669.237 kb on - strand, within MPMX19_05167at 669.287 kb on + strand, within MPMX19_05167at 669.287 kb on + strand, within MPMX19_05167at 669.287 kb on + strand, within MPMX19_05167at 669.287 kb on + strand, within MPMX19_05167at 669.374 kb on + strand, within MPMX19_05167at 669.374 kb on + strand, within MPMX19_05167at 669.374 kb on + strand, within MPMX19_05167at 669.375 kb on - strand, within MPMX19_05167at 669.375 kb on - strand, within MPMX19_05167at 669.375 kb on - strand, within MPMX19_05167at 669.375 kb on - strand, within MPMX19_05167at 669.891 kb on - strandat 669.891 kb on - strandat 670.308 kb on + strand, within MPMX19_05168at 670.309 kb on - strand, within MPMX19_05168at 670.309 kb on - strand, within MPMX19_05168at 670.587 kb on + strand, within MPMX19_05168at 670.587 kb on + strand, within MPMX19_05168at 670.587 kb on + strand, within MPMX19_05168at 670.587 kb on + strand, within MPMX19_05168at 670.587 kb on + strand, within MPMX19_05168at 670.587 kb on + strand, within MPMX19_05168at 670.587 kb on + strand, within MPMX19_05168at 670.588 kb on - strand, within MPMX19_05168at 670.588 kb on - strand, within MPMX19_05168at 670.588 kb on - strand, within MPMX19_05168at 670.627 kb on + strand, within MPMX19_05168at 670.627 kb on + strand, within MPMX19_05168at 670.627 kb on + strand, within MPMX19_05168at 670.628 kb on - strand, within MPMX19_05168at 670.628 kb on - strand, within MPMX19_05168at 670.628 kb on - strand, within MPMX19_05168at 670.681 kb on + strand, within MPMX19_05168at 670.681 kb on + strand, within MPMX19_05168at 670.682 kb on - strand, within MPMX19_05168at 670.682 kb on - strand, within MPMX19_05168at 670.682 kb on - strand, within MPMX19_05168at 670.796 kb on + strand, within MPMX19_05168at 670.796 kb on + strand, within MPMX19_05168at 670.797 kb on - strand, within MPMX19_05168

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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668,127 + MPMX19_05166 0.62 +0.3
668,127 + MPMX19_05166 0.62 +0.1
668,128 - MPMX19_05166 0.62 -0.3
668,128 - MPMX19_05166 0.62 -0.5
668,152 - MPMX19_05166 0.63 +0.3
668,152 - MPMX19_05166 0.63 -0.5
668,281 - MPMX19_05166 0.69 -2.0
668,430 + MPMX19_05166 0.76 +0.6
668,431 - MPMX19_05166 0.76 -1.3
668,431 - MPMX19_05166 0.76 -0.5
668,517 + MPMX19_05166 0.80 -0.0
668,517 + MPMX19_05166 0.80 -1.3
668,517 + MPMX19_05166 0.80 +0.3
668,517 + MPMX19_05166 0.80 +0.0
668,517 + MPMX19_05166 0.80 -0.1
668,517 + MPMX19_05166 0.80 +0.1
668,517 + MPMX19_05166 0.80 -0.1
668,518 - MPMX19_05166 0.80 +0.3
668,518 - MPMX19_05166 0.80 -0.7
668,518 - MPMX19_05166 0.80 +1.4
668,518 - MPMX19_05166 0.80 -2.3
668,518 - MPMX19_05166 0.80 -0.4
668,518 - MPMX19_05166 0.80 -0.2
668,518 - MPMX19_05166 0.80 +0.7
668,535 + MPMX19_05166 0.80 +0.5
668,535 + MPMX19_05166 0.80 -0.6
668,536 - MPMX19_05166 0.81 +0.0
668,693 + MPMX19_05166 0.88 +0.7
668,694 - MPMX19_05166 0.88 -1.6
668,694 - MPMX19_05166 0.88 +1.3
668,694 - MPMX19_05166 0.88 +0.2
668,694 - MPMX19_05166 0.88 -2.5
668,946 + -0.8
669,236 + MPMX19_05167 0.16 -2.3
669,237 - MPMX19_05167 0.16 -1.8
669,287 + MPMX19_05167 0.22 -1.2
669,287 + MPMX19_05167 0.22 -1.3
669,287 + MPMX19_05167 0.22 -0.6
669,287 + MPMX19_05167 0.22 -0.8
669,374 + MPMX19_05167 0.32 -1.1
669,374 + MPMX19_05167 0.32 -0.8
669,374 + MPMX19_05167 0.32 -0.7
669,375 - MPMX19_05167 0.32 -0.4
669,375 - MPMX19_05167 0.32 -0.9
669,375 - MPMX19_05167 0.32 +0.7
669,375 - MPMX19_05167 0.32 -0.4
669,891 - -1.9
669,891 - +1.3
670,308 + MPMX19_05168 0.36 -0.7
670,309 - MPMX19_05168 0.36 -0.9
670,309 - MPMX19_05168 0.36 -0.7
670,587 + MPMX19_05168 0.62 +0.5
670,587 + MPMX19_05168 0.62 -0.8
670,587 + MPMX19_05168 0.62 -0.2
670,587 + MPMX19_05168 0.62 +1.0
670,587 + MPMX19_05168 0.62 +1.3
670,587 + MPMX19_05168 0.62 -1.1
670,587 + MPMX19_05168 0.62 -0.3
670,588 - MPMX19_05168 0.62 -0.8
670,588 - MPMX19_05168 0.62 -0.6
670,588 - MPMX19_05168 0.62 -1.0
670,627 + MPMX19_05168 0.66 +1.5
670,627 + MPMX19_05168 0.66 -1.3
670,627 + MPMX19_05168 0.66 +1.0
670,628 - MPMX19_05168 0.66 -2.6
670,628 - MPMX19_05168 0.66 +0.3
670,628 - MPMX19_05168 0.66 -0.6
670,681 + MPMX19_05168 0.71 -0.1
670,681 + MPMX19_05168 0.71 +0.3
670,682 - MPMX19_05168 0.71 -0.4
670,682 - MPMX19_05168 0.71 -1.1
670,682 - MPMX19_05168 0.71 +0.1
670,796 + MPMX19_05168 0.82 +0.2
670,796 + MPMX19_05168 0.82 +0.3
670,797 - MPMX19_05168 0.82 +0.4

Or see this region's nucleotide sequence