Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05051 and MPMX19_05052 are separated by 73 nucleotides MPMX19_05052 and MPMX19_05053 are separated by 94 nucleotides
MPMX19_05051: MPMX19_05051 - Aromatic amino acid exporter YddG, at 535,950 to 536,924
_05051
MPMX19_05052: MPMX19_05052 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 536,998 to 538,386
_05052
MPMX19_05053: MPMX19_05053 - hypothetical protein, at 538,481 to 539,254
_05053
Position (kb) 536
537
538
539 Strain fitness (log2 ratio) -2
-1
0
1
2 at 536.086 kb on + strand, within MPMX19_05051 at 536.086 kb on + strand, within MPMX19_05051 at 536.086 kb on + strand, within MPMX19_05051 at 536.086 kb on + strand, within MPMX19_05051 at 536.087 kb on - strand, within MPMX19_05051 at 536.087 kb on - strand, within MPMX19_05051 at 536.087 kb on - strand, within MPMX19_05051 at 536.087 kb on - strand, within MPMX19_05051 at 536.087 kb on - strand, within MPMX19_05051 at 536.087 kb on - strand, within MPMX19_05051 at 536.087 kb on - strand, within MPMX19_05051 at 536.087 kb on - strand, within MPMX19_05051 at 536.128 kb on + strand, within MPMX19_05051 at 536.329 kb on + strand, within MPMX19_05051 at 536.329 kb on + strand, within MPMX19_05051 at 536.330 kb on - strand, within MPMX19_05051 at 536.330 kb on - strand, within MPMX19_05051 at 536.330 kb on - strand, within MPMX19_05051 at 536.368 kb on + strand, within MPMX19_05051 at 536.368 kb on + strand, within MPMX19_05051 at 536.369 kb on - strand, within MPMX19_05051 at 536.369 kb on - strand, within MPMX19_05051 at 536.369 kb on - strand, within MPMX19_05051 at 536.369 kb on - strand, within MPMX19_05051 at 536.369 kb on - strand, within MPMX19_05051 at 536.369 kb on - strand, within MPMX19_05051 at 536.542 kb on + strand, within MPMX19_05051 at 536.542 kb on + strand, within MPMX19_05051 at 536.542 kb on + strand, within MPMX19_05051 at 536.542 kb on + strand, within MPMX19_05051 at 536.542 kb on + strand, within MPMX19_05051 at 536.542 kb on + strand, within MPMX19_05051 at 536.542 kb on + strand, within MPMX19_05051 at 536.542 kb on + strand, within MPMX19_05051 at 536.543 kb on - strand, within MPMX19_05051 at 536.543 kb on - strand, within MPMX19_05051 at 536.543 kb on - strand, within MPMX19_05051 at 536.543 kb on - strand, within MPMX19_05051 at 536.543 kb on - strand, within MPMX19_05051 at 536.543 kb on - strand, within MPMX19_05051 at 536.543 kb on - strand, within MPMX19_05051 at 536.543 kb on - strand, within MPMX19_05051 at 536.543 kb on - strand, within MPMX19_05051 at 536.543 kb on - strand, within MPMX19_05051 at 536.543 kb on - strand, within MPMX19_05051 at 536.543 kb on - strand, within MPMX19_05051 at 536.611 kb on + strand, within MPMX19_05051 at 536.936 kb on + strand at 536.936 kb on + strand at 536.936 kb on + strand at 536.936 kb on + strand at 536.936 kb on + strand at 536.936 kb on + strand at 536.936 kb on + strand at 536.936 kb on + strand at 536.936 kb on + strand at 536.936 kb on + strand at 536.936 kb on + strand at 536.936 kb on + strand at 536.936 kb on + strand at 536.936 kb on + strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.937 kb on - strand at 536.941 kb on + strand at 536.941 kb on + strand at 536.942 kb on - strand at 537.191 kb on + strand, within MPMX19_05052 at 537.191 kb on + strand, within MPMX19_05052 at 537.191 kb on + strand, within MPMX19_05052 at 537.192 kb on - strand, within MPMX19_05052 at 537.356 kb on + strand, within MPMX19_05052 at 537.356 kb on + strand, within MPMX19_05052 at 537.356 kb on + strand, within MPMX19_05052 at 537.356 kb on + strand, within MPMX19_05052 at 537.356 kb on + strand, within MPMX19_05052 at 537.356 kb on + strand, within MPMX19_05052 at 537.356 kb on + strand, within MPMX19_05052 at 537.357 kb on - strand, within MPMX19_05052 at 537.357 kb on - strand, within MPMX19_05052 at 537.357 kb on - strand, within MPMX19_05052 at 537.357 kb on - strand, within MPMX19_05052 at 537.357 kb on - strand, within MPMX19_05052 at 537.357 kb on - strand, within MPMX19_05052 at 537.857 kb on + strand, within MPMX19_05052 at 537.857 kb on + strand, within MPMX19_05052 at 537.857 kb on + strand, within MPMX19_05052 at 537.857 kb on + strand, within MPMX19_05052 at 537.857 kb on + strand, within MPMX19_05052 at 537.857 kb on + strand, within MPMX19_05052 at 537.857 kb on + strand, within MPMX19_05052 at 537.857 kb on + strand, within MPMX19_05052 at 537.857 kb on + strand, within MPMX19_05052 at 537.858 kb on - strand, within MPMX19_05052 at 537.858 kb on - strand, within MPMX19_05052 at 537.858 kb on - strand, within MPMX19_05052 at 537.968 kb on + strand, within MPMX19_05052 at 537.968 kb on + strand, within MPMX19_05052 at 537.969 kb on - strand, within MPMX19_05052 at 537.969 kb on - strand, within MPMX19_05052 at 537.969 kb on - strand, within MPMX19_05052 at 537.969 kb on - strand, within MPMX19_05052 at 537.969 kb on - strand, within MPMX19_05052 at 537.969 kb on - strand, within MPMX19_05052 at 538.094 kb on + strand, within MPMX19_05052 at 538.094 kb on + strand, within MPMX19_05052 at 538.094 kb on + strand, within MPMX19_05052 at 538.094 kb on + strand, within MPMX19_05052 at 538.094 kb on + strand, within MPMX19_05052 at 538.094 kb on + strand, within MPMX19_05052 at 538.095 kb on - strand, within MPMX19_05052 at 538.095 kb on - strand, within MPMX19_05052 at 538.109 kb on + strand, within MPMX19_05052 at 538.109 kb on + strand, within MPMX19_05052 at 538.109 kb on + strand, within MPMX19_05052 at 538.109 kb on + strand, within MPMX19_05052 at 538.109 kb on + strand, within MPMX19_05052 at 538.109 kb on + strand, within MPMX19_05052 at 538.109 kb on + strand, within MPMX19_05052 at 538.110 kb on - strand, within MPMX19_05052 at 538.110 kb on - strand, within MPMX19_05052 at 538.110 kb on - strand, within MPMX19_05052 at 538.110 kb on - strand, within MPMX19_05052 at 538.110 kb on - strand, within MPMX19_05052 at 538.110 kb on - strand, within MPMX19_05052 at 538.110 kb on - strand, within MPMX19_05052 at 538.110 kb on - strand, within MPMX19_05052 at 538.599 kb on + strand, within MPMX19_05053 at 538.599 kb on + strand, within MPMX19_05053 at 538.599 kb on + strand, within MPMX19_05053 at 538.599 kb on + strand, within MPMX19_05053 at 538.599 kb on + strand, within MPMX19_05053 at 538.599 kb on + strand, within MPMX19_05053 at 538.599 kb on + strand, within MPMX19_05053 at 538.599 kb on + strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.720 kb on - strand, within MPMX19_05053 at 538.749 kb on + strand, within MPMX19_05053 at 538.749 kb on + strand, within MPMX19_05053 at 538.750 kb on - strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.818 kb on + strand, within MPMX19_05053 at 538.818 kb on + strand, within MPMX19_05053 at 538.818 kb on + strand, within MPMX19_05053 at 538.818 kb on + strand, within MPMX19_05053 at 538.819 kb on - strand, within MPMX19_05053 at 538.819 kb on - strand, within MPMX19_05053 at 538.833 kb on + strand, within MPMX19_05053 at 538.833 kb on + strand, within MPMX19_05053 at 538.834 kb on - strand, within MPMX19_05053 at 538.834 kb on - strand, within MPMX19_05053 at 538.834 kb on - strand, within MPMX19_05053 at 538.834 kb on - strand, within MPMX19_05053 at 538.980 kb on + strand, within MPMX19_05053 at 538.981 kb on - strand, within MPMX19_05053 at 538.981 kb on - strand, within MPMX19_05053 at 539.040 kb on + strand, within MPMX19_05053 at 539.040 kb on + strand, within MPMX19_05053 at 539.040 kb on + strand, within MPMX19_05053 at 539.041 kb on - strand, within MPMX19_05053 at 539.041 kb on - strand, within MPMX19_05053 at 539.306 kb on + strand at 539.306 kb on + strand at 539.306 kb on + strand at 539.306 kb on + strand at 539.306 kb on + strand at 539.306 kb on + strand at 539.307 kb on - strand at 539.307 kb on - strand at 539.309 kb on - strand at 539.309 kb on - strand at 539.309 kb on - strand at 539.322 kb on + strand at 539.322 kb on + strand at 539.322 kb on + strand at 539.322 kb on + strand at 539.323 kb on - strand at 539.328 kb on + strand at 539.328 kb on + strand at 539.328 kb on + strand at 539.329 kb on - strand at 539.342 kb on + strand at 539.342 kb on + strand at 539.343 kb on - strand at 539.343 kb on - strand at 539.343 kb on - strand at 539.343 kb on - strand at 539.345 kb on - strand at 539.345 kb on - strand at 539.345 kb on - strand at 539.345 kb on - strand at 539.345 kb on - strand at 539.345 kb on - strand at 539.345 kb on - strand at 539.345 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 536,086 + MPMX19_05051 0.14 +1.5 536,086 + MPMX19_05051 0.14 -1.4 536,086 + MPMX19_05051 0.14 -0.3 536,086 + MPMX19_05051 0.14 +0.3 536,087 - MPMX19_05051 0.14 +0.7 536,087 - MPMX19_05051 0.14 -0.8 536,087 - MPMX19_05051 0.14 +0.6 536,087 - MPMX19_05051 0.14 -1.6 536,087 - MPMX19_05051 0.14 +0.0 536,087 - MPMX19_05051 0.14 +0.3 536,087 - MPMX19_05051 0.14 -0.1 536,087 - MPMX19_05051 0.14 +0.3 536,128 + MPMX19_05051 0.18 -0.9 536,329 + MPMX19_05051 0.39 -0.9 536,329 + MPMX19_05051 0.39 -1.3 536,330 - MPMX19_05051 0.39 +0.2 536,330 - MPMX19_05051 0.39 -0.3 536,330 - MPMX19_05051 0.39 +1.9 536,368 + MPMX19_05051 0.43 -0.9 536,368 + MPMX19_05051 0.43 -1.1 536,369 - MPMX19_05051 0.43 -1.3 536,369 - MPMX19_05051 0.43 -1.9 536,369 - MPMX19_05051 0.43 +0.1 536,369 - MPMX19_05051 0.43 -1.3 536,369 - MPMX19_05051 0.43 -0.1 536,369 - MPMX19_05051 0.43 -0.5 536,542 + MPMX19_05051 0.61 +0.8 536,542 + MPMX19_05051 0.61 -0.8 536,542 + MPMX19_05051 0.61 -0.3 536,542 + MPMX19_05051 0.61 +0.7 536,542 + MPMX19_05051 0.61 -1.7 536,542 + MPMX19_05051 0.61 -0.7 536,542 + MPMX19_05051 0.61 -0.5 536,542 + MPMX19_05051 0.61 +0.7 536,543 - MPMX19_05051 0.61 -1.3 536,543 - MPMX19_05051 0.61 -1.2 536,543 - MPMX19_05051 0.61 -1.1 536,543 - MPMX19_05051 0.61 +1.2 536,543 - MPMX19_05051 0.61 -1.0 536,543 - MPMX19_05051 0.61 -2.4 536,543 - MPMX19_05051 0.61 -1.2 536,543 - MPMX19_05051 0.61 -1.1 536,543 - MPMX19_05051 0.61 +0.5 536,543 - MPMX19_05051 0.61 -2.4 536,543 - MPMX19_05051 0.61 -1.8 536,543 - MPMX19_05051 0.61 +0.2 536,611 + MPMX19_05051 0.68 -0.3 536,936 + +0.7 536,936 + +0.8 536,936 + -1.3 536,936 + +0.1 536,936 + -0.5 536,936 + -1.1 536,936 + -1.0 536,936 + +0.5 536,936 + +0.5 536,936 + -0.5 536,936 + +0.4 536,936 + -1.1 536,936 + -0.1 536,936 + -0.7 536,937 - -0.5 536,937 - -2.5 536,937 - -1.1 536,937 - +0.6 536,937 - -2.3 536,937 - -1.4 536,937 - -0.6 536,937 - -0.4 536,937 - -1.9 536,937 - -1.3 536,937 - -1.4 536,937 - -0.7 536,937 - -0.5 536,937 - +0.8 536,937 - +0.7 536,937 - +0.1 536,937 - -0.2 536,937 - -0.4 536,937 - -0.5 536,937 - -1.1 536,937 - -1.3 536,937 - +0.5 536,941 + +0.3 536,941 + -0.8 536,942 - -0.1 537,191 + MPMX19_05052 0.14 -0.6 537,191 + MPMX19_05052 0.14 +0.6 537,191 + MPMX19_05052 0.14 +0.3 537,192 - MPMX19_05052 0.14 -1.5 537,356 + MPMX19_05052 0.26 -0.7 537,356 + MPMX19_05052 0.26 -0.9 537,356 + MPMX19_05052 0.26 +0.2 537,356 + MPMX19_05052 0.26 -0.9 537,356 + MPMX19_05052 0.26 +0.1 537,356 + MPMX19_05052 0.26 +0.2 537,356 + MPMX19_05052 0.26 -0.1 537,357 - MPMX19_05052 0.26 -0.8 537,357 - MPMX19_05052 0.26 +0.8 537,357 - MPMX19_05052 0.26 +0.3 537,357 - MPMX19_05052 0.26 +0.5 537,357 - MPMX19_05052 0.26 -0.3 537,357 - MPMX19_05052 0.26 -0.8 537,857 + MPMX19_05052 0.62 -0.3 537,857 + MPMX19_05052 0.62 +0.1 537,857 + MPMX19_05052 0.62 +0.6 537,857 + MPMX19_05052 0.62 +0.1 537,857 + MPMX19_05052 0.62 +0.6 537,857 + MPMX19_05052 0.62 +0.5 537,857 + MPMX19_05052 0.62 -0.6 537,857 + MPMX19_05052 0.62 -0.9 537,857 + MPMX19_05052 0.62 -0.9 537,858 - MPMX19_05052 0.62 -1.6 537,858 - MPMX19_05052 0.62 +1.3 537,858 - MPMX19_05052 0.62 -0.8 537,968 + MPMX19_05052 0.70 -0.1 537,968 + MPMX19_05052 0.70 -0.8 537,969 - MPMX19_05052 0.70 -0.2 537,969 - MPMX19_05052 0.70 -0.4 537,969 - MPMX19_05052 0.70 -0.5 537,969 - MPMX19_05052 0.70 -1.8 537,969 - MPMX19_05052 0.70 -0.3 537,969 - MPMX19_05052 0.70 -0.3 538,094 + MPMX19_05052 0.79 +0.7 538,094 + MPMX19_05052 0.79 -1.4 538,094 + MPMX19_05052 0.79 -0.1 538,094 + MPMX19_05052 0.79 +0.3 538,094 + MPMX19_05052 0.79 -0.3 538,094 + MPMX19_05052 0.79 +0.1 538,095 - MPMX19_05052 0.79 -1.5 538,095 - MPMX19_05052 0.79 -0.2 538,109 + MPMX19_05052 0.80 -0.9 538,109 + MPMX19_05052 0.80 -0.4 538,109 + MPMX19_05052 0.80 +0.1 538,109 + MPMX19_05052 0.80 -1.3 538,109 + MPMX19_05052 0.80 -1.3 538,109 + MPMX19_05052 0.80 -2.2 538,109 + MPMX19_05052 0.80 -0.6 538,110 - MPMX19_05052 0.80 +0.8 538,110 - MPMX19_05052 0.80 +0.3 538,110 - MPMX19_05052 0.80 +0.5 538,110 - MPMX19_05052 0.80 -1.9 538,110 - MPMX19_05052 0.80 -0.1 538,110 - MPMX19_05052 0.80 -0.2 538,110 - MPMX19_05052 0.80 +0.5 538,110 - MPMX19_05052 0.80 -2.7 538,599 + MPMX19_05053 0.15 -0.5 538,599 + MPMX19_05053 0.15 -1.2 538,599 + MPMX19_05053 0.15 -0.8 538,599 + MPMX19_05053 0.15 -0.7 538,599 + MPMX19_05053 0.15 -0.1 538,599 + MPMX19_05053 0.15 -0.9 538,599 + MPMX19_05053 0.15 -0.5 538,599 + MPMX19_05053 0.15 -0.8 538,600 - MPMX19_05053 0.15 +1.1 538,600 - MPMX19_05053 0.15 -0.7 538,600 - MPMX19_05053 0.15 -0.4 538,600 - MPMX19_05053 0.15 +0.0 538,600 - MPMX19_05053 0.15 +0.5 538,600 - MPMX19_05053 0.15 -0.1 538,600 - MPMX19_05053 0.15 -1.4 538,600 - MPMX19_05053 0.15 -1.7 538,600 - MPMX19_05053 0.15 -0.7 538,720 - MPMX19_05053 0.31 -0.5 538,749 + MPMX19_05053 0.35 -0.5 538,749 + MPMX19_05053 0.35 -0.2 538,750 - MPMX19_05053 0.35 -1.4 538,764 + MPMX19_05053 0.37 -1.5 538,764 + MPMX19_05053 0.37 -1.7 538,764 + MPMX19_05053 0.37 -0.3 538,764 + MPMX19_05053 0.37 -2.0 538,764 + MPMX19_05053 0.37 -1.7 538,764 + MPMX19_05053 0.37 -1.3 538,764 + MPMX19_05053 0.37 -2.3 538,764 + MPMX19_05053 0.37 -0.8 538,764 + MPMX19_05053 0.37 -2.1 538,764 + MPMX19_05053 0.37 -1.1 538,765 - MPMX19_05053 0.37 -0.4 538,765 - MPMX19_05053 0.37 +1.5 538,765 - MPMX19_05053 0.37 +0.0 538,765 - MPMX19_05053 0.37 -1.2 538,765 - MPMX19_05053 0.37 -2.0 538,765 - MPMX19_05053 0.37 -0.7 538,765 - MPMX19_05053 0.37 -1.6 538,765 - MPMX19_05053 0.37 -1.0 538,765 - MPMX19_05053 0.37 -0.6 538,765 - MPMX19_05053 0.37 +0.8 538,818 + MPMX19_05053 0.44 -0.7 538,818 + MPMX19_05053 0.44 -0.3 538,818 + MPMX19_05053 0.44 +0.3 538,818 + MPMX19_05053 0.44 -0.7 538,819 - MPMX19_05053 0.44 -0.6 538,819 - MPMX19_05053 0.44 -1.5 538,833 + MPMX19_05053 0.45 -1.2 538,833 + MPMX19_05053 0.45 -0.2 538,834 - MPMX19_05053 0.46 +0.1 538,834 - MPMX19_05053 0.46 -0.8 538,834 - MPMX19_05053 0.46 +0.9 538,834 - MPMX19_05053 0.46 -0.6 538,980 + MPMX19_05053 0.64 -0.8 538,981 - MPMX19_05053 0.65 -1.3 538,981 - MPMX19_05053 0.65 -1.5 539,040 + MPMX19_05053 0.72 -0.6 539,040 + MPMX19_05053 0.72 -0.2 539,040 + MPMX19_05053 0.72 +0.9 539,041 - MPMX19_05053 0.72 +0.1 539,041 - MPMX19_05053 0.72 +0.3 539,306 + -1.3 539,306 + -0.8 539,306 + +0.2 539,306 + -0.8 539,306 + -0.3 539,306 + +0.5 539,307 - -0.6 539,307 - -0.0 539,309 - -2.2 539,309 - -1.1 539,309 - +0.8 539,322 + -0.8 539,322 + -0.3 539,322 + -0.3 539,322 + -0.5 539,323 - -0.8 539,328 + -1.0 539,328 + -0.8 539,328 + -1.5 539,329 - -0.5 539,342 + +2.1 539,342 + +0.2 539,343 - -0.8 539,343 - -1.6 539,343 - +0.8 539,343 - -0.7 539,345 - -0.5 539,345 - -1.1 539,345 - -0.5 539,345 - +0.0 539,345 - -0.7 539,345 - +0.1 539,345 - -0.9 539,345 - -0.3 539,351 - -0.7 539,351 - -0.4 539,351 - -0.8 539,351 - +1.1 539,351 - +0.3 539,351 - +0.8 539,351 - -0.7 539,351 - -0.8 539,351 - -1.1 539,351 - -1.3 539,351 - -0.4 539,351 - -1.8
Or see this region's nucleotide sequence