Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04967 and MPMX19_04968 are separated by 88 nucleotides MPMX19_04968 and MPMX19_04969 are separated by 64 nucleotides
MPMX19_04967: MPMX19_04967 - ADP-heptose--LPS heptosyltransferase 2, at 432,489 to 433,499
_04967
MPMX19_04968: MPMX19_04968 - hypothetical protein, at 433,588 to 434,139
_04968
MPMX19_04969: MPMX19_04969 - Glutamine-dependent NAD(+) synthetase, at 434,204 to 436,249
_04969
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 433.436 kb on + strand at 433.483 kb on + strand at 433.606 kb on + strand at 433.606 kb on + strand at 433.606 kb on + strand at 433.606 kb on + strand at 433.606 kb on + strand at 433.606 kb on + strand at 433.606 kb on + strand at 433.607 kb on - strand at 433.607 kb on - strand at 433.607 kb on - strand at 433.607 kb on - strand at 433.607 kb on - strand at 433.607 kb on - strand at 433.607 kb on - strand at 433.607 kb on - strand at 433.677 kb on + strand, within MPMX19_04968 at 433.678 kb on - strand, within MPMX19_04968 at 433.678 kb on - strand, within MPMX19_04968 at 433.714 kb on + strand, within MPMX19_04968 at 433.714 kb on + strand, within MPMX19_04968 at 433.715 kb on - strand, within MPMX19_04968 at 434.409 kb on + strand, within MPMX19_04969 at 434.409 kb on + strand, within MPMX19_04969 at 434.409 kb on + strand, within MPMX19_04969 at 434.410 kb on - strand, within MPMX19_04969 at 434.526 kb on + strand, within MPMX19_04969 at 434.526 kb on + strand, within MPMX19_04969 at 434.526 kb on + strand, within MPMX19_04969 at 434.526 kb on + strand, within MPMX19_04969 at 434.526 kb on + strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.536 kb on + strand, within MPMX19_04969 at 434.537 kb on - strand, within MPMX19_04969 at 434.537 kb on - strand, within MPMX19_04969 at 434.657 kb on + strand, within MPMX19_04969 at 434.742 kb on + strand, within MPMX19_04969 at 434.742 kb on + strand, within MPMX19_04969 at 434.742 kb on + strand, within MPMX19_04969 at 434.742 kb on + strand, within MPMX19_04969 at 434.742 kb on + strand, within MPMX19_04969 at 434.742 kb on + strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.770 kb on - strand, within MPMX19_04969 at 434.770 kb on - strand, within MPMX19_04969 at 434.770 kb on - strand, within MPMX19_04969 at 434.853 kb on + strand, within MPMX19_04969 at 434.853 kb on + strand, within MPMX19_04969 at 434.853 kb on + strand, within MPMX19_04969 at 434.853 kb on + strand, within MPMX19_04969 at 434.854 kb on - strand, within MPMX19_04969 at 434.854 kb on - strand, within MPMX19_04969 at 434.897 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.900 kb on + strand, within MPMX19_04969 at 434.900 kb on + strand, within MPMX19_04969 at 434.901 kb on - strand, within MPMX19_04969 at 434.901 kb on - strand, within MPMX19_04969 at 434.919 kb on + strand, within MPMX19_04969 at 434.920 kb on - strand, within MPMX19_04969 at 434.920 kb on - strand, within MPMX19_04969 at 434.920 kb on - strand, within MPMX19_04969 at 435.097 kb on + strand, within MPMX19_04969 at 435.098 kb on - strand, within MPMX19_04969
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 433,436 + +0.8 433,483 + -0.0 433,606 + -2.1 433,606 + +0.3 433,606 + -0.3 433,606 + -0.0 433,606 + +0.2 433,606 + -0.0 433,606 + -1.4 433,607 - +0.1 433,607 - -0.3 433,607 - -1.4 433,607 - -1.2 433,607 - -0.8 433,607 - -1.2 433,607 - -0.4 433,607 - -1.5 433,677 + MPMX19_04968 0.16 -2.8 433,678 - MPMX19_04968 0.16 -0.3 433,678 - MPMX19_04968 0.16 -0.5 433,714 + MPMX19_04968 0.23 -1.8 433,714 + MPMX19_04968 0.23 +0.3 433,715 - MPMX19_04968 0.23 -1.5 434,409 + MPMX19_04969 0.10 -1.0 434,409 + MPMX19_04969 0.10 -0.4 434,409 + MPMX19_04969 0.10 -0.6 434,410 - MPMX19_04969 0.10 -0.4 434,526 + MPMX19_04969 0.16 +0.6 434,526 + MPMX19_04969 0.16 -1.4 434,526 + MPMX19_04969 0.16 -0.7 434,526 + MPMX19_04969 0.16 -2.8 434,526 + MPMX19_04969 0.16 +1.1 434,527 - MPMX19_04969 0.16 -0.0 434,527 - MPMX19_04969 0.16 -1.2 434,527 - MPMX19_04969 0.16 -1.3 434,527 - MPMX19_04969 0.16 -0.8 434,527 - MPMX19_04969 0.16 -0.9 434,527 - MPMX19_04969 0.16 -1.5 434,527 - MPMX19_04969 0.16 -2.0 434,527 - MPMX19_04969 0.16 +0.1 434,536 + MPMX19_04969 0.16 -0.0 434,537 - MPMX19_04969 0.16 -0.2 434,537 - MPMX19_04969 0.16 -1.3 434,657 + MPMX19_04969 0.22 -1.2 434,742 + MPMX19_04969 0.26 -2.0 434,742 + MPMX19_04969 0.26 -2.5 434,742 + MPMX19_04969 0.26 -1.2 434,742 + MPMX19_04969 0.26 +0.1 434,742 + MPMX19_04969 0.26 -0.7 434,742 + MPMX19_04969 0.26 -1.2 434,743 - MPMX19_04969 0.26 +0.5 434,743 - MPMX19_04969 0.26 -0.9 434,743 - MPMX19_04969 0.26 +0.7 434,743 - MPMX19_04969 0.26 -1.1 434,743 - MPMX19_04969 0.26 +0.1 434,743 - MPMX19_04969 0.26 -0.0 434,743 - MPMX19_04969 0.26 +0.2 434,743 - MPMX19_04969 0.26 -1.7 434,743 - MPMX19_04969 0.26 +1.0 434,769 + MPMX19_04969 0.28 +0.8 434,769 + MPMX19_04969 0.28 -0.7 434,769 + MPMX19_04969 0.28 +0.5 434,769 + MPMX19_04969 0.28 -0.2 434,769 + MPMX19_04969 0.28 -0.3 434,769 + MPMX19_04969 0.28 -0.5 434,769 + MPMX19_04969 0.28 -1.2 434,769 + MPMX19_04969 0.28 -0.7 434,769 + MPMX19_04969 0.28 -0.6 434,770 - MPMX19_04969 0.28 -0.8 434,770 - MPMX19_04969 0.28 +0.3 434,770 - MPMX19_04969 0.28 -0.4 434,853 + MPMX19_04969 0.32 -1.0 434,853 + MPMX19_04969 0.32 -1.3 434,853 + MPMX19_04969 0.32 -0.8 434,853 + MPMX19_04969 0.32 +0.1 434,854 - MPMX19_04969 0.32 -0.9 434,854 - MPMX19_04969 0.32 -0.0 434,897 + MPMX19_04969 0.34 +0.5 434,898 + MPMX19_04969 0.34 +0.7 434,898 + MPMX19_04969 0.34 -0.7 434,898 + MPMX19_04969 0.34 -1.2 434,898 + MPMX19_04969 0.34 +0.8 434,898 + MPMX19_04969 0.34 -1.2 434,898 + MPMX19_04969 0.34 -0.1 434,898 + MPMX19_04969 0.34 -1.9 434,898 + MPMX19_04969 0.34 -0.5 434,898 + MPMX19_04969 0.34 -0.6 434,898 + MPMX19_04969 0.34 -3.3 434,898 + MPMX19_04969 0.34 +0.3 434,898 + MPMX19_04969 0.34 +0.5 434,898 + MPMX19_04969 0.34 -1.0 434,899 - MPMX19_04969 0.34 -0.9 434,899 - MPMX19_04969 0.34 +0.1 434,899 - MPMX19_04969 0.34 -0.8 434,899 - MPMX19_04969 0.34 +0.3 434,899 - MPMX19_04969 0.34 -2.6 434,899 - MPMX19_04969 0.34 -0.3 434,899 - MPMX19_04969 0.34 +0.4 434,899 - MPMX19_04969 0.34 -0.6 434,899 - MPMX19_04969 0.34 -2.5 434,899 - MPMX19_04969 0.34 -2.5 434,899 - MPMX19_04969 0.34 -0.9 434,900 + MPMX19_04969 0.34 -1.4 434,900 + MPMX19_04969 0.34 -0.2 434,901 - MPMX19_04969 0.34 -0.0 434,901 - MPMX19_04969 0.34 +0.7 434,919 + MPMX19_04969 0.35 -0.9 434,920 - MPMX19_04969 0.35 +1.1 434,920 - MPMX19_04969 0.35 -0.5 434,920 - MPMX19_04969 0.35 +0.1 435,097 + MPMX19_04969 0.44 +0.1 435,098 - MPMX19_04969 0.44 +0.2
Or see this region's nucleotide sequence