Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04919 and MPMX19_04920 are separated by 34 nucleotides MPMX19_04920 and MPMX19_04921 are separated by 218 nucleotides MPMX19_04921 and MPMX19_04922 are separated by 45 nucleotides
MPMX19_04919: MPMX19_04919 - 5-aminovalerate aminotransferase DavT, at 375,407 to 376,696
_04919
MPMX19_04920: MPMX19_04920 - Succinate-semialdehyde dehydrogenase [NADP(+)] GabD, at 376,731 to 378,191
_04920
MPMX19_04921: MPMX19_04921 - HTH-type transcriptional regulator PuuR, at 378,410 to 378,976
_04921
MPMX19_04922: MPMX19_04922 - Putative 2-aminoethylphosphonate transport system permease protein PhnV, at 379,022 to 379,852
_04922
Position (kb) 376
377
378
379 Strain fitness (log2 ratio) -2
-1
0
1
2 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.234 kb on - strand, within MPMX19_04919 at 376.234 kb on - strand, within MPMX19_04919 at 376.234 kb on - strand, within MPMX19_04919 at 376.234 kb on - strand, within MPMX19_04919 at 376.449 kb on + strand, within MPMX19_04919 at 376.450 kb on - strand, within MPMX19_04919 at 376.620 kb on + strand at 376.620 kb on + strand at 376.620 kb on + strand at 376.620 kb on + strand at 376.620 kb on + strand at 376.620 kb on + strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.756 kb on + strand at 376.756 kb on + strand at 376.756 kb on + strand at 376.757 kb on - strand at 376.757 kb on - strand at 376.757 kb on - strand at 376.787 kb on - strand at 376.787 kb on - strand at 376.787 kb on - strand at 376.787 kb on - strand at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.930 kb on + strand, within MPMX19_04920 at 376.930 kb on + strand, within MPMX19_04920 at 376.930 kb on + strand, within MPMX19_04920 at 376.931 kb on - strand, within MPMX19_04920 at 376.931 kb on - strand, within MPMX19_04920 at 376.931 kb on - strand, within MPMX19_04920 at 376.931 kb on - strand, within MPMX19_04920 at 376.936 kb on + strand, within MPMX19_04920 at 376.937 kb on - strand, within MPMX19_04920 at 376.937 kb on - strand, within MPMX19_04920 at 376.937 kb on - strand, within MPMX19_04920 at 376.937 kb on - strand, within MPMX19_04920 at 377.281 kb on + strand, within MPMX19_04920 at 377.281 kb on + strand, within MPMX19_04920 at 377.281 kb on + strand, within MPMX19_04920 at 377.281 kb on + strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.341 kb on + strand, within MPMX19_04920 at 377.342 kb on - strand, within MPMX19_04920 at 377.342 kb on - strand, within MPMX19_04920 at 377.809 kb on + strand, within MPMX19_04920 at 377.809 kb on + strand, within MPMX19_04920 at 377.809 kb on + strand, within MPMX19_04920 at 377.857 kb on + strand, within MPMX19_04920 at 377.857 kb on + strand, within MPMX19_04920 at 377.857 kb on + strand, within MPMX19_04920 at 377.858 kb on - strand, within MPMX19_04920 at 377.858 kb on - strand, within MPMX19_04920 at 377.950 kb on + strand, within MPMX19_04920 at 377.950 kb on + strand, within MPMX19_04920 at 378.148 kb on + strand at 378.148 kb on + strand at 378.148 kb on + strand at 378.149 kb on - strand at 378.149 kb on - strand at 378.149 kb on - strand at 378.218 kb on - strand at 378.218 kb on - strand at 378.304 kb on - strand at 378.335 kb on + strand at 378.335 kb on + strand at 378.335 kb on + strand at 378.336 kb on - strand at 378.336 kb on - strand at 378.336 kb on - strand at 378.336 kb on - strand at 378.345 kb on + strand at 378.345 kb on + strand at 378.383 kb on + strand at 378.384 kb on - strand at 378.756 kb on - strand, within MPMX19_04921 at 378.756 kb on - strand, within MPMX19_04921 at 378.884 kb on + strand, within MPMX19_04921 at 378.884 kb on + strand, within MPMX19_04921 at 378.884 kb on + strand, within MPMX19_04921 at 378.884 kb on + strand, within MPMX19_04921 at 378.884 kb on + strand, within MPMX19_04921 at 378.885 kb on - strand, within MPMX19_04921 at 378.968 kb on + strand at 378.968 kb on + strand at 378.968 kb on + strand at 378.968 kb on + strand at 378.969 kb on - strand at 378.969 kb on - strand at 378.969 kb on - strand at 378.996 kb on + strand at 378.996 kb on + strand at 378.996 kb on + strand at 378.997 kb on - strand at 378.997 kb on - strand at 379.024 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 375,804 + MPMX19_04919 0.31 +0.7 375,804 + MPMX19_04919 0.31 -2.5 375,804 + MPMX19_04919 0.31 -2.5 375,804 + MPMX19_04919 0.31 -0.3 375,804 + MPMX19_04919 0.31 +1.8 375,804 + MPMX19_04919 0.31 -0.9 375,804 + MPMX19_04919 0.31 +0.6 375,804 + MPMX19_04919 0.31 +0.1 375,804 + MPMX19_04919 0.31 -1.4 375,804 + MPMX19_04919 0.31 -1.5 375,805 - MPMX19_04919 0.31 -1.1 375,805 - MPMX19_04919 0.31 -1.1 375,805 - MPMX19_04919 0.31 +1.5 375,805 - MPMX19_04919 0.31 -0.4 375,805 - MPMX19_04919 0.31 -0.6 375,805 - MPMX19_04919 0.31 -0.0 375,805 - MPMX19_04919 0.31 -0.0 375,805 - MPMX19_04919 0.31 +0.6 375,805 - MPMX19_04919 0.31 -0.1 375,805 - MPMX19_04919 0.31 -0.8 375,805 - MPMX19_04919 0.31 -0.8 375,805 - MPMX19_04919 0.31 +0.2 375,805 - MPMX19_04919 0.31 +0.2 376,233 + MPMX19_04919 0.64 -0.3 376,233 + MPMX19_04919 0.64 -0.0 376,233 + MPMX19_04919 0.64 +0.1 376,233 + MPMX19_04919 0.64 -0.8 376,233 + MPMX19_04919 0.64 -2.0 376,234 - MPMX19_04919 0.64 +0.7 376,234 - MPMX19_04919 0.64 -1.0 376,234 - MPMX19_04919 0.64 -0.4 376,234 - MPMX19_04919 0.64 +0.2 376,449 + MPMX19_04919 0.81 +0.3 376,450 - MPMX19_04919 0.81 +0.6 376,620 + -1.1 376,620 + +0.2 376,620 + +1.1 376,620 + -0.6 376,620 + -0.4 376,620 + -0.3 376,621 - +0.8 376,621 - +0.0 376,621 - -0.5 376,621 - +1.6 376,621 - -0.2 376,621 - +0.3 376,621 - -1.4 376,621 - +1.1 376,621 - -0.6 376,621 - -0.4 376,621 - -0.0 376,756 + -0.5 376,756 + +1.2 376,756 + -0.9 376,757 - -0.4 376,757 - -1.8 376,757 - -1.1 376,787 - -0.1 376,787 - +0.7 376,787 - -2.0 376,787 - +0.3 376,883 - MPMX19_04920 0.10 -0.4 376,883 - MPMX19_04920 0.10 -0.8 376,883 - MPMX19_04920 0.10 -1.4 376,883 - MPMX19_04920 0.10 -1.4 376,883 - MPMX19_04920 0.10 -0.3 376,883 - MPMX19_04920 0.10 -0.4 376,883 - MPMX19_04920 0.10 -1.7 376,930 + MPMX19_04920 0.14 -0.4 376,930 + MPMX19_04920 0.14 +0.7 376,930 + MPMX19_04920 0.14 -0.0 376,931 - MPMX19_04920 0.14 -0.4 376,931 - MPMX19_04920 0.14 -0.8 376,931 - MPMX19_04920 0.14 -1.0 376,931 - MPMX19_04920 0.14 -1.8 376,936 + MPMX19_04920 0.14 -1.0 376,937 - MPMX19_04920 0.14 -1.0 376,937 - MPMX19_04920 0.14 -1.4 376,937 - MPMX19_04920 0.14 -0.1 376,937 - MPMX19_04920 0.14 -0.3 377,281 + MPMX19_04920 0.38 -0.5 377,281 + MPMX19_04920 0.38 -0.4 377,281 + MPMX19_04920 0.38 -0.7 377,281 + MPMX19_04920 0.38 -1.8 377,282 - MPMX19_04920 0.38 +0.3 377,282 - MPMX19_04920 0.38 -0.3 377,282 - MPMX19_04920 0.38 -0.7 377,282 - MPMX19_04920 0.38 -0.9 377,282 - MPMX19_04920 0.38 -1.4 377,282 - MPMX19_04920 0.38 +0.4 377,282 - MPMX19_04920 0.38 -0.4 377,282 - MPMX19_04920 0.38 -1.5 377,282 - MPMX19_04920 0.38 +0.4 377,341 + MPMX19_04920 0.42 -0.5 377,342 - MPMX19_04920 0.42 -1.0 377,342 - MPMX19_04920 0.42 -0.3 377,809 + MPMX19_04920 0.74 -0.5 377,809 + MPMX19_04920 0.74 +0.1 377,809 + MPMX19_04920 0.74 -1.0 377,857 + MPMX19_04920 0.77 -0.6 377,857 + MPMX19_04920 0.77 -1.2 377,857 + MPMX19_04920 0.77 +0.1 377,858 - MPMX19_04920 0.77 -0.0 377,858 - MPMX19_04920 0.77 -0.0 377,950 + MPMX19_04920 0.83 +0.4 377,950 + MPMX19_04920 0.83 +0.1 378,148 + +1.6 378,148 + -1.2 378,148 + -1.5 378,149 - -0.8 378,149 - +0.4 378,149 - -2.1 378,218 - -0.8 378,218 - +0.9 378,304 - -2.2 378,335 + +0.1 378,335 + -2.3 378,335 + -1.6 378,336 - -2.0 378,336 - -1.0 378,336 - +0.2 378,336 - -0.9 378,345 + +0.6 378,345 + -0.6 378,383 + +0.1 378,384 - -0.2 378,756 - MPMX19_04921 0.61 -0.3 378,756 - MPMX19_04921 0.61 -0.0 378,884 + MPMX19_04921 0.84 -1.0 378,884 + MPMX19_04921 0.84 -0.8 378,884 + MPMX19_04921 0.84 -2.1 378,884 + MPMX19_04921 0.84 +0.1 378,884 + MPMX19_04921 0.84 -0.5 378,885 - MPMX19_04921 0.84 -0.4 378,968 + +0.6 378,968 + -0.8 378,968 + -1.0 378,968 + -0.2 378,969 - -0.2 378,969 - +0.6 378,969 - -1.8 378,996 + -0.9 378,996 + -0.0 378,996 + -2.0 378,997 - +0.7 378,997 - -1.3 379,024 - -0.4
Or see this region's nucleotide sequence