Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04863

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04862 and MPMX19_04863 are separated by 18 nucleotidesMPMX19_04863 and MPMX19_04864 are separated by 76 nucleotidesMPMX19_04864 and MPMX19_04865 overlap by 1 nucleotides MPMX19_04862: MPMX19_04862 - hypothetical protein, at 300,205 to 301,752 _04862 MPMX19_04863: MPMX19_04863 - Transcriptional regulatory protein LnrK, at 301,771 to 302,505 _04863 MPMX19_04864: MPMX19_04864 - hypothetical protein, at 302,582 to 302,680 _04864 MPMX19_04865: MPMX19_04865 - Sensor histidine kinase RcsC, at 302,680 to 304,167 _04865 Position (kb) 301 302 303Strain fitness (log2 ratio) -2 -1 0 1at 300.952 kb on + strand, within MPMX19_04862at 300.952 kb on + strand, within MPMX19_04862at 300.952 kb on + strand, within MPMX19_04862at 300.952 kb on + strand, within MPMX19_04862at 300.952 kb on + strand, within MPMX19_04862at 300.953 kb on - strand, within MPMX19_04862at 300.953 kb on - strand, within MPMX19_04862at 300.953 kb on - strand, within MPMX19_04862at 300.953 kb on - strand, within MPMX19_04862at 301.178 kb on - strand, within MPMX19_04862at 301.178 kb on - strand, within MPMX19_04862at 301.178 kb on - strand, within MPMX19_04862at 301.468 kb on + strand, within MPMX19_04862at 301.468 kb on + strand, within MPMX19_04862at 301.468 kb on + strand, within MPMX19_04862at 301.469 kb on - strand, within MPMX19_04862at 301.469 kb on - strand, within MPMX19_04862at 301.469 kb on - strand, within MPMX19_04862at 301.750 kb on + strandat 301.750 kb on + strandat 301.750 kb on + strandat 301.750 kb on + strandat 301.751 kb on - strandat 301.751 kb on - strandat 301.751 kb on - strandat 301.751 kb on - strandat 301.751 kb on - strandat 302.279 kb on + strand, within MPMX19_04863at 302.279 kb on + strand, within MPMX19_04863at 302.279 kb on + strand, within MPMX19_04863at 302.366 kb on + strand, within MPMX19_04863at 302.366 kb on + strand, within MPMX19_04863at 302.366 kb on + strand, within MPMX19_04863at 302.367 kb on - strand, within MPMX19_04863at 302.532 kb on - strandat 302.539 kb on + strandat 302.540 kb on - strandat 302.540 kb on - strandat 302.583 kb on + strandat 302.583 kb on + strandat 302.583 kb on + strandat 302.583 kb on + strandat 302.583 kb on + strandat 302.583 kb on + strandat 302.583 kb on + strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.603 kb on + strand, within MPMX19_04864at 302.603 kb on + strand, within MPMX19_04864at 302.603 kb on + strand, within MPMX19_04864at 302.603 kb on + strand, within MPMX19_04864at 302.604 kb on - strand, within MPMX19_04864at 302.604 kb on - strand, within MPMX19_04864at 302.984 kb on + strand, within MPMX19_04865at 302.984 kb on + strand, within MPMX19_04865at 302.984 kb on + strand, within MPMX19_04865at 302.984 kb on + strand, within MPMX19_04865at 302.985 kb on - strand, within MPMX19_04865at 302.985 kb on - strand, within MPMX19_04865at 302.985 kb on - strand, within MPMX19_04865at 302.985 kb on - strand, within MPMX19_04865at 302.985 kb on - strand, within MPMX19_04865at 303.496 kb on + strand, within MPMX19_04865at 303.496 kb on + strand, within MPMX19_04865at 303.496 kb on + strand, within MPMX19_04865at 303.496 kb on + strand, within MPMX19_04865at 303.497 kb on - strand, within MPMX19_04865at 303.497 kb on - strand, within MPMX19_04865at 303.497 kb on - strand, within MPMX19_04865at 303.497 kb on - strand, within MPMX19_04865at 303.497 kb on - strand, within MPMX19_04865at 303.497 kb on - strand, within MPMX19_04865at 303.497 kb on - strand, within MPMX19_04865

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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300,952 + MPMX19_04862 0.48 +1.1
300,952 + MPMX19_04862 0.48 -2.0
300,952 + MPMX19_04862 0.48 -0.1
300,952 + MPMX19_04862 0.48 -0.7
300,952 + MPMX19_04862 0.48 -1.0
300,953 - MPMX19_04862 0.48 -0.4
300,953 - MPMX19_04862 0.48 -0.8
300,953 - MPMX19_04862 0.48 -1.0
300,953 - MPMX19_04862 0.48 -1.2
301,178 - MPMX19_04862 0.63 +0.0
301,178 - MPMX19_04862 0.63 -0.1
301,178 - MPMX19_04862 0.63 +0.7
301,468 + MPMX19_04862 0.82 +0.8
301,468 + MPMX19_04862 0.82 -2.3
301,468 + MPMX19_04862 0.82 -1.5
301,469 - MPMX19_04862 0.82 +0.3
301,469 - MPMX19_04862 0.82 -0.2
301,469 - MPMX19_04862 0.82 -1.6
301,750 + +0.4
301,750 + -0.4
301,750 + +0.3
301,750 + -2.0
301,751 - +1.1
301,751 - +0.4
301,751 - +0.5
301,751 - -0.2
301,751 - -0.5
302,279 + MPMX19_04863 0.69 -1.0
302,279 + MPMX19_04863 0.69 -0.9
302,279 + MPMX19_04863 0.69 -0.5
302,366 + MPMX19_04863 0.81 -1.5
302,366 + MPMX19_04863 0.81 -1.5
302,366 + MPMX19_04863 0.81 +0.1
302,367 - MPMX19_04863 0.81 -0.5
302,532 - -2.2
302,539 + -2.3
302,540 - +0.3
302,540 - -0.3
302,583 + -0.3
302,583 + -0.5
302,583 + +0.1
302,583 + -0.9
302,583 + -2.4
302,583 + -0.4
302,583 + -1.1
302,584 - -0.5
302,584 - -1.1
302,584 - -0.3
302,584 - -1.0
302,584 - -0.2
302,584 - -1.2
302,584 - -0.6
302,584 - -2.3
302,584 - -0.3
302,584 - +0.1
302,603 + MPMX19_04864 0.21 -1.0
302,603 + MPMX19_04864 0.21 -0.8
302,603 + MPMX19_04864 0.21 -0.5
302,603 + MPMX19_04864 0.21 -0.5
302,604 - MPMX19_04864 0.22 -0.3
302,604 - MPMX19_04864 0.22 -1.0
302,984 + MPMX19_04865 0.20 -0.4
302,984 + MPMX19_04865 0.20 -0.5
302,984 + MPMX19_04865 0.20 -1.2
302,984 + MPMX19_04865 0.20 +0.2
302,985 - MPMX19_04865 0.20 -2.4
302,985 - MPMX19_04865 0.20 -1.6
302,985 - MPMX19_04865 0.20 -1.6
302,985 - MPMX19_04865 0.20 +0.5
302,985 - MPMX19_04865 0.20 -1.8
303,496 + MPMX19_04865 0.55 -1.2
303,496 + MPMX19_04865 0.55 -0.0
303,496 + MPMX19_04865 0.55 -0.2
303,496 + MPMX19_04865 0.55 -0.1
303,497 - MPMX19_04865 0.55 -0.0
303,497 - MPMX19_04865 0.55 +0.4
303,497 - MPMX19_04865 0.55 -0.5
303,497 - MPMX19_04865 0.55 -0.9
303,497 - MPMX19_04865 0.55 -0.8
303,497 - MPMX19_04865 0.55 +0.2
303,497 - MPMX19_04865 0.55 -0.6

Or see this region's nucleotide sequence