Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04790 and MPMX19_04791 overlap by 8 nucleotides MPMX19_04791 and MPMX19_04792 overlap by 4 nucleotides MPMX19_04792 and MPMX19_04793 overlap by 4 nucleotides
MPMX19_04790: MPMX19_04790 - hypothetical protein, at 188,121 to 188,927
_04790
MPMX19_04791: MPMX19_04791 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 188,920 to 189,663
_04791
MPMX19_04792: MPMX19_04792 - hypothetical protein, at 189,660 to 190,547
_04792
MPMX19_04793: MPMX19_04793 - D-inositol-3-phosphate glycosyltransferase, at 190,544 to 192,574
_04793
Position (kb) 189
190
191 Strain fitness (log2 ratio) -2
-1
0
1 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.812 kb on + strand, within MPMX19_04790 at 188.813 kb on - strand, within MPMX19_04790 at 188.813 kb on - strand, within MPMX19_04790 at 188.813 kb on - strand, within MPMX19_04790 at 188.813 kb on - strand, within MPMX19_04790 at 188.813 kb on - strand, within MPMX19_04790 at 188.813 kb on - strand, within MPMX19_04790 at 188.813 kb on - strand, within MPMX19_04790 at 188.813 kb on - strand, within MPMX19_04790 at 188.813 kb on - strand, within MPMX19_04790 at 188.813 kb on - strand, within MPMX19_04790 at 188.813 kb on - strand, within MPMX19_04790 at 188.813 kb on - strand, within MPMX19_04790 at 188.813 kb on - strand, within MPMX19_04790 at 189.155 kb on + strand, within MPMX19_04791 at 189.156 kb on - strand, within MPMX19_04791 at 189.512 kb on + strand, within MPMX19_04791 at 189.512 kb on + strand, within MPMX19_04791 at 189.512 kb on + strand, within MPMX19_04791 at 189.512 kb on + strand, within MPMX19_04791 at 189.513 kb on - strand, within MPMX19_04791 at 189.513 kb on - strand, within MPMX19_04791 at 189.638 kb on + strand at 189.722 kb on - strand at 189.916 kb on + strand, within MPMX19_04792 at 189.916 kb on + strand, within MPMX19_04792 at 189.917 kb on - strand, within MPMX19_04792 at 189.917 kb on - strand, within MPMX19_04792 at 189.917 kb on - strand, within MPMX19_04792 at 189.955 kb on + strand, within MPMX19_04792 at 189.955 kb on + strand, within MPMX19_04792 at 189.955 kb on + strand, within MPMX19_04792 at 190.333 kb on + strand, within MPMX19_04792 at 190.333 kb on + strand, within MPMX19_04792 at 190.334 kb on - strand, within MPMX19_04792 at 190.334 kb on - strand, within MPMX19_04792 at 190.529 kb on + strand at 190.530 kb on - strand at 190.530 kb on - strand at 190.530 kb on - strand at 190.530 kb on - strand at 190.594 kb on - strand at 190.594 kb on - strand at 190.594 kb on - strand at 190.594 kb on - strand at 190.594 kb on - strand at 190.758 kb on + strand, within MPMX19_04793 at 190.759 kb on - strand, within MPMX19_04793 at 191.067 kb on + strand, within MPMX19_04793 at 191.207 kb on - strand, within MPMX19_04793 at 191.207 kb on - strand, within MPMX19_04793 at 191.221 kb on + strand, within MPMX19_04793 at 191.221 kb on + strand, within MPMX19_04793 at 191.221 kb on + strand, within MPMX19_04793 at 191.221 kb on + strand, within MPMX19_04793 at 191.221 kb on + strand, within MPMX19_04793 at 191.221 kb on + strand, within MPMX19_04793 at 191.222 kb on - strand, within MPMX19_04793 at 191.222 kb on - strand, within MPMX19_04793 at 191.222 kb on - strand, within MPMX19_04793 at 191.259 kb on + strand, within MPMX19_04793 at 191.533 kb on + strand, within MPMX19_04793 at 191.533 kb on + strand, within MPMX19_04793 at 191.534 kb on - strand, within MPMX19_04793 at 191.534 kb on - strand, within MPMX19_04793 at 191.534 kb on - strand, within MPMX19_04793 at 191.534 kb on - strand, within MPMX19_04793 at 191.534 kb on - strand, within MPMX19_04793
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 188,812 + MPMX19_04790 0.86 -1.6 188,812 + MPMX19_04790 0.86 -0.2 188,812 + MPMX19_04790 0.86 +0.1 188,812 + MPMX19_04790 0.86 -1.1 188,812 + MPMX19_04790 0.86 +0.7 188,812 + MPMX19_04790 0.86 -0.4 188,812 + MPMX19_04790 0.86 +1.3 188,812 + MPMX19_04790 0.86 -0.7 188,812 + MPMX19_04790 0.86 +0.5 188,812 + MPMX19_04790 0.86 +0.2 188,812 + MPMX19_04790 0.86 -0.8 188,812 + MPMX19_04790 0.86 +0.3 188,812 + MPMX19_04790 0.86 -0.4 188,812 + MPMX19_04790 0.86 -1.0 188,812 + MPMX19_04790 0.86 -1.7 188,812 + MPMX19_04790 0.86 -0.1 188,812 + MPMX19_04790 0.86 -1.6 188,812 + MPMX19_04790 0.86 -0.5 188,812 + MPMX19_04790 0.86 -0.1 188,812 + MPMX19_04790 0.86 -1.5 188,812 + MPMX19_04790 0.86 -0.6 188,812 + MPMX19_04790 0.86 +0.1 188,812 + MPMX19_04790 0.86 -1.5 188,812 + MPMX19_04790 0.86 -0.5 188,812 + MPMX19_04790 0.86 -1.0 188,813 - MPMX19_04790 0.86 +1.2 188,813 - MPMX19_04790 0.86 -2.1 188,813 - MPMX19_04790 0.86 -0.2 188,813 - MPMX19_04790 0.86 +0.2 188,813 - MPMX19_04790 0.86 -0.9 188,813 - MPMX19_04790 0.86 -0.9 188,813 - MPMX19_04790 0.86 -0.1 188,813 - MPMX19_04790 0.86 +0.3 188,813 - MPMX19_04790 0.86 +0.2 188,813 - MPMX19_04790 0.86 +0.5 188,813 - MPMX19_04790 0.86 +1.0 188,813 - MPMX19_04790 0.86 -0.9 188,813 - MPMX19_04790 0.86 +0.9 189,155 + MPMX19_04791 0.32 -1.2 189,156 - MPMX19_04791 0.32 -0.6 189,512 + MPMX19_04791 0.80 +0.7 189,512 + MPMX19_04791 0.80 -1.1 189,512 + MPMX19_04791 0.80 +0.2 189,512 + MPMX19_04791 0.80 -1.1 189,513 - MPMX19_04791 0.80 +0.1 189,513 - MPMX19_04791 0.80 -0.7 189,638 + +1.3 189,722 - -0.5 189,916 + MPMX19_04792 0.29 -0.1 189,916 + MPMX19_04792 0.29 +0.9 189,917 - MPMX19_04792 0.29 +1.3 189,917 - MPMX19_04792 0.29 +0.4 189,917 - MPMX19_04792 0.29 -1.3 189,955 + MPMX19_04792 0.33 -1.1 189,955 + MPMX19_04792 0.33 -0.1 189,955 + MPMX19_04792 0.33 +1.5 190,333 + MPMX19_04792 0.76 +0.8 190,333 + MPMX19_04792 0.76 -0.4 190,334 - MPMX19_04792 0.76 -0.8 190,334 - MPMX19_04792 0.76 +1.6 190,529 + -0.6 190,530 - -0.7 190,530 - +0.8 190,530 - -0.3 190,530 - -0.6 190,594 - +0.4 190,594 - +0.9 190,594 - -0.3 190,594 - -0.1 190,594 - +0.3 190,758 + MPMX19_04793 0.11 +0.1 190,759 - MPMX19_04793 0.11 +0.1 191,067 + MPMX19_04793 0.26 +0.1 191,207 - MPMX19_04793 0.33 -0.0 191,207 - MPMX19_04793 0.33 +0.4 191,221 + MPMX19_04793 0.33 +0.1 191,221 + MPMX19_04793 0.33 +0.7 191,221 + MPMX19_04793 0.33 +0.8 191,221 + MPMX19_04793 0.33 -1.6 191,221 + MPMX19_04793 0.33 +0.9 191,221 + MPMX19_04793 0.33 -0.6 191,222 - MPMX19_04793 0.33 +1.5 191,222 - MPMX19_04793 0.33 -0.8 191,222 - MPMX19_04793 0.33 -1.5 191,259 + MPMX19_04793 0.35 -1.1 191,533 + MPMX19_04793 0.49 -0.8 191,533 + MPMX19_04793 0.49 -1.6 191,534 - MPMX19_04793 0.49 -0.2 191,534 - MPMX19_04793 0.49 -0.9 191,534 - MPMX19_04793 0.49 -1.6 191,534 - MPMX19_04793 0.49 -1.2 191,534 - MPMX19_04793 0.49 -0.9
Or see this region's nucleotide sequence