Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04788

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04786 and MPMX19_04787 overlap by 4 nucleotidesMPMX19_04787 and MPMX19_04788 overlap by 4 nucleotidesMPMX19_04788 and MPMX19_04789 are separated by 5 nucleotidesMPMX19_04789 and MPMX19_04790 overlap by 4 nucleotides MPMX19_04786: MPMX19_04786 - Thymidylate kinase, at 183,922 to 185,208 _04786 MPMX19_04787: MPMX19_04787 - hypothetical protein, at 185,205 to 185,969 _04787 MPMX19_04788: MPMX19_04788 - D-inositol-3-phosphate glycosyltransferase, at 185,966 to 187,231 _04788 MPMX19_04789: MPMX19_04789 - hypothetical protein, at 187,237 to 188,124 _04789 MPMX19_04790: MPMX19_04790 - hypothetical protein, at 188,121 to 188,927 _04790 Position (kb) 185 186 187 188Strain fitness (log2 ratio) -2 -1 0 1 2at 185.496 kb on + strand, within MPMX19_04787at 185.892 kb on - strand, within MPMX19_04787at 185.892 kb on - strand, within MPMX19_04787at 185.892 kb on - strand, within MPMX19_04787at 185.947 kb on + strandat 185.948 kb on - strandat 185.948 kb on - strandat 186.024 kb on + strandat 186.024 kb on + strandat 186.024 kb on + strandat 186.024 kb on + strandat 186.025 kb on - strandat 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.520 kb on - strand, within MPMX19_04788at 186.520 kb on - strand, within MPMX19_04788at 186.520 kb on - strand, within MPMX19_04788at 186.975 kb on + strand, within MPMX19_04788at 186.975 kb on + strand, within MPMX19_04788at 186.975 kb on + strand, within MPMX19_04788at 186.976 kb on - strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.042 kb on - strand, within MPMX19_04788at 187.042 kb on - strand, within MPMX19_04788at 187.042 kb on - strand, within MPMX19_04788at 187.042 kb on - strand, within MPMX19_04788at 187.042 kb on - strand, within MPMX19_04788at 187.042 kb on - strand, within MPMX19_04788at 187.042 kb on - strand, within MPMX19_04788at 187.044 kb on + strand, within MPMX19_04788at 187.044 kb on + strand, within MPMX19_04788at 187.044 kb on + strand, within MPMX19_04788at 187.045 kb on - strand, within MPMX19_04788at 187.045 kb on - strand, within MPMX19_04788at 187.045 kb on - strand, within MPMX19_04788at 187.045 kb on - strand, within MPMX19_04788at 187.209 kb on + strandat 187.209 kb on + strandat 187.209 kb on + strandat 187.209 kb on + strandat 187.209 kb on + strandat 187.209 kb on + strandat 187.210 kb on - strandat 187.210 kb on - strandat 187.260 kb on + strandat 187.261 kb on - strandat 187.261 kb on - strandat 187.261 kb on - strandat 187.442 kb on + strand, within MPMX19_04789at 187.442 kb on + strand, within MPMX19_04789at 187.442 kb on + strand, within MPMX19_04789at 187.442 kb on + strand, within MPMX19_04789at 187.443 kb on - strand, within MPMX19_04789at 187.443 kb on - strand, within MPMX19_04789at 187.443 kb on - strand, within MPMX19_04789at 187.481 kb on + strand, within MPMX19_04789at 187.482 kb on - strand, within MPMX19_04789at 187.482 kb on - strand, within MPMX19_04789at 187.526 kb on + strand, within MPMX19_04789at 187.526 kb on + strand, within MPMX19_04789at 187.526 kb on + strand, within MPMX19_04789at 187.526 kb on + strand, within MPMX19_04789at 187.527 kb on - strand, within MPMX19_04789at 187.527 kb on - strand, within MPMX19_04789at 187.527 kb on - strand, within MPMX19_04789at 187.527 kb on - strand, within MPMX19_04789at 187.527 kb on - strand, within MPMX19_04789at 187.527 kb on - strand, within MPMX19_04789at 187.527 kb on - strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.557 kb on - strand, within MPMX19_04789at 187.557 kb on - strand, within MPMX19_04789at 187.557 kb on - strand, within MPMX19_04789at 187.557 kb on - strand, within MPMX19_04789at 187.625 kb on + strand, within MPMX19_04789at 187.625 kb on + strand, within MPMX19_04789at 187.626 kb on - strand, within MPMX19_04789at 187.703 kb on + strand, within MPMX19_04789at 187.704 kb on - strand, within MPMX19_04789at 187.704 kb on - strand, within MPMX19_04789at 187.704 kb on - strand, within MPMX19_04789at 187.704 kb on - strand, within MPMX19_04789at 187.704 kb on - strand, within MPMX19_04789at 187.966 kb on + strand, within MPMX19_04789at 187.966 kb on + strand, within MPMX19_04789at 187.967 kb on - strand, within MPMX19_04789at 187.967 kb on - strand, within MPMX19_04789at 187.967 kb on - strand, within MPMX19_04789at 187.967 kb on - strand, within MPMX19_04789at 187.976 kb on + strand, within MPMX19_04789at 187.976 kb on + strand, within MPMX19_04789at 187.977 kb on - strand, within MPMX19_04789at 187.977 kb on - strand, within MPMX19_04789

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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185,496 + MPMX19_04787 0.38 -1.8
185,892 - MPMX19_04787 0.90 -0.8
185,892 - MPMX19_04787 0.90 -0.0
185,892 - MPMX19_04787 0.90 +0.1
185,947 + -1.8
185,948 - -0.9
185,948 - -0.3
186,024 + +0.2
186,024 + -1.1
186,024 + -0.1
186,024 + -1.1
186,025 - -1.1
186,519 + MPMX19_04788 0.44 -0.1
186,519 + MPMX19_04788 0.44 +0.0
186,519 + MPMX19_04788 0.44 -0.2
186,519 + MPMX19_04788 0.44 -0.6
186,519 + MPMX19_04788 0.44 -0.4
186,519 + MPMX19_04788 0.44 +0.4
186,519 + MPMX19_04788 0.44 +0.1
186,519 + MPMX19_04788 0.44 -2.1
186,519 + MPMX19_04788 0.44 -0.8
186,520 - MPMX19_04788 0.44 -0.8
186,520 - MPMX19_04788 0.44 +0.1
186,520 - MPMX19_04788 0.44 +0.6
186,975 + MPMX19_04788 0.80 +0.8
186,975 + MPMX19_04788 0.80 -1.3
186,975 + MPMX19_04788 0.80 -0.2
186,976 - MPMX19_04788 0.80 +0.0
187,041 + MPMX19_04788 0.85 +0.3
187,041 + MPMX19_04788 0.85 +0.5
187,041 + MPMX19_04788 0.85 +0.4
187,041 + MPMX19_04788 0.85 -0.5
187,041 + MPMX19_04788 0.85 -2.2
187,041 + MPMX19_04788 0.85 +1.4
187,041 + MPMX19_04788 0.85 -0.1
187,041 + MPMX19_04788 0.85 +0.2
187,041 + MPMX19_04788 0.85 +0.7
187,041 + MPMX19_04788 0.85 -0.5
187,041 + MPMX19_04788 0.85 -0.3
187,042 - MPMX19_04788 0.85 -0.9
187,042 - MPMX19_04788 0.85 -0.5
187,042 - MPMX19_04788 0.85 -1.1
187,042 - MPMX19_04788 0.85 +0.0
187,042 - MPMX19_04788 0.85 -0.4
187,042 - MPMX19_04788 0.85 +1.5
187,042 - MPMX19_04788 0.85 +2.0
187,044 + MPMX19_04788 0.85 +0.2
187,044 + MPMX19_04788 0.85 +0.0
187,044 + MPMX19_04788 0.85 +0.4
187,045 - MPMX19_04788 0.85 -0.1
187,045 - MPMX19_04788 0.85 -0.1
187,045 - MPMX19_04788 0.85 -0.6
187,045 - MPMX19_04788 0.85 -0.2
187,209 + +0.7
187,209 + -0.7
187,209 + -0.4
187,209 + -2.1
187,209 + -0.5
187,209 + -0.7
187,210 - -1.6
187,210 - -1.1
187,260 + -1.1
187,261 - -0.1
187,261 - +0.4
187,261 - -0.8
187,442 + MPMX19_04789 0.23 +0.2
187,442 + MPMX19_04789 0.23 -0.6
187,442 + MPMX19_04789 0.23 -0.7
187,442 + MPMX19_04789 0.23 -0.8
187,443 - MPMX19_04789 0.23 -1.3
187,443 - MPMX19_04789 0.23 -0.6
187,443 - MPMX19_04789 0.23 -0.3
187,481 + MPMX19_04789 0.27 -0.5
187,482 - MPMX19_04789 0.28 -0.4
187,482 - MPMX19_04789 0.28 +0.4
187,526 + MPMX19_04789 0.33 -0.3
187,526 + MPMX19_04789 0.33 -0.9
187,526 + MPMX19_04789 0.33 -0.8
187,526 + MPMX19_04789 0.33 -1.1
187,527 - MPMX19_04789 0.33 -0.2
187,527 - MPMX19_04789 0.33 -0.8
187,527 - MPMX19_04789 0.33 -0.8
187,527 - MPMX19_04789 0.33 -0.8
187,527 - MPMX19_04789 0.33 +1.0
187,527 - MPMX19_04789 0.33 +0.7
187,527 - MPMX19_04789 0.33 -1.1
187,556 + MPMX19_04789 0.36 +0.8
187,556 + MPMX19_04789 0.36 -0.6
187,556 + MPMX19_04789 0.36 -0.1
187,556 + MPMX19_04789 0.36 -0.2
187,556 + MPMX19_04789 0.36 +1.5
187,556 + MPMX19_04789 0.36 -0.2
187,556 + MPMX19_04789 0.36 -1.9
187,556 + MPMX19_04789 0.36 -0.2
187,557 - MPMX19_04789 0.36 -1.1
187,557 - MPMX19_04789 0.36 -1.0
187,557 - MPMX19_04789 0.36 -1.6
187,557 - MPMX19_04789 0.36 +0.9
187,625 + MPMX19_04789 0.44 -1.1
187,625 + MPMX19_04789 0.44 -0.3
187,626 - MPMX19_04789 0.44 -0.4
187,703 + MPMX19_04789 0.52 -2.1
187,704 - MPMX19_04789 0.53 -1.8
187,704 - MPMX19_04789 0.53 -1.5
187,704 - MPMX19_04789 0.53 -0.4
187,704 - MPMX19_04789 0.53 +1.5
187,704 - MPMX19_04789 0.53 -0.5
187,966 + MPMX19_04789 0.82 -0.2
187,966 + MPMX19_04789 0.82 +0.7
187,967 - MPMX19_04789 0.82 +0.9
187,967 - MPMX19_04789 0.82 -0.4
187,967 - MPMX19_04789 0.82 -1.0
187,967 - MPMX19_04789 0.82 +0.5
187,976 + MPMX19_04789 0.83 -0.4
187,976 + MPMX19_04789 0.83 +0.4
187,977 - MPMX19_04789 0.83 -0.9
187,977 - MPMX19_04789 0.83 +0.1

Or see this region's nucleotide sequence