Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04670 and MPMX19_04671 are separated by 156 nucleotides MPMX19_04671 and MPMX19_04672 are separated by 48 nucleotides MPMX19_04672 and MPMX19_04673 are separated by 100 nucleotides
MPMX19_04670: MPMX19_04670 - hypothetical protein, at 56,356 to 56,910
_04670
MPMX19_04671: MPMX19_04671 - hypothetical protein, at 57,067 to 57,462
_04671
MPMX19_04672: MPMX19_04672 - Aldehyde reductase YahK, at 57,511 to 58,560
_04672
MPMX19_04673: MPMX19_04673 - Purine ribonucleoside efflux pump NepI, at 58,661 to 59,878
_04673
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.561 kb on - strand, within MPMX19_04670 at 56.716 kb on + strand, within MPMX19_04670 at 56.716 kb on + strand, within MPMX19_04670 at 56.716 kb on + strand, within MPMX19_04670 at 56.716 kb on + strand, within MPMX19_04670 at 56.716 kb on + strand, within MPMX19_04670 at 56.716 kb on + strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.854 kb on - strand, within MPMX19_04670 at 56.854 kb on - strand, within MPMX19_04670 at 56.854 kb on - strand, within MPMX19_04670 at 56.854 kb on - strand, within MPMX19_04670 at 56.985 kb on - strand at 56.985 kb on - strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.130 kb on - strand, within MPMX19_04671 at 57.451 kb on + strand at 57.451 kb on + strand at 57.451 kb on + strand at 57.452 kb on + strand at 57.452 kb on - strand at 57.452 kb on - strand at 57.452 kb on - strand at 57.452 kb on - strand at 57.452 kb on - strand at 57.452 kb on - strand at 57.526 kb on + strand at 57.526 kb on + strand at 57.526 kb on + strand at 57.527 kb on - strand at 57.616 kb on + strand, within MPMX19_04672 at 57.616 kb on + strand, within MPMX19_04672 at 57.616 kb on + strand, within MPMX19_04672 at 57.617 kb on - strand, within MPMX19_04672 at 57.617 kb on - strand, within MPMX19_04672 at 57.826 kb on + strand, within MPMX19_04672 at 57.826 kb on + strand, within MPMX19_04672 at 57.827 kb on - strand, within MPMX19_04672 at 57.827 kb on - strand, within MPMX19_04672 at 57.827 kb on - strand, within MPMX19_04672 at 57.850 kb on + strand, within MPMX19_04672 at 57.850 kb on + strand, within MPMX19_04672 at 57.850 kb on + strand, within MPMX19_04672 at 57.850 kb on + strand, within MPMX19_04672 at 57.850 kb on + strand, within MPMX19_04672 at 57.850 kb on + strand, within MPMX19_04672 at 57.850 kb on + strand, within MPMX19_04672 at 57.850 kb on + strand, within MPMX19_04672 at 57.851 kb on - strand, within MPMX19_04672 at 57.851 kb on - strand, within MPMX19_04672 at 57.851 kb on - strand, within MPMX19_04672 at 57.851 kb on - strand, within MPMX19_04672 at 57.851 kb on - strand, within MPMX19_04672 at 57.851 kb on - strand, within MPMX19_04672 at 57.895 kb on + strand, within MPMX19_04672 at 57.925 kb on + strand, within MPMX19_04672 at 57.925 kb on + strand, within MPMX19_04672 at 57.925 kb on + strand, within MPMX19_04672 at 57.925 kb on + strand, within MPMX19_04672 at 57.925 kb on + strand, within MPMX19_04672 at 57.925 kb on + strand, within MPMX19_04672 at 57.926 kb on - strand, within MPMX19_04672 at 57.926 kb on - strand, within MPMX19_04672 at 57.926 kb on - strand, within MPMX19_04672 at 57.926 kb on - strand, within MPMX19_04672 at 57.926 kb on - strand, within MPMX19_04672 at 57.926 kb on - strand, within MPMX19_04672 at 57.926 kb on - strand, within MPMX19_04672 at 58.000 kb on + strand, within MPMX19_04672 at 58.000 kb on + strand, within MPMX19_04672 at 58.000 kb on + strand, within MPMX19_04672 at 58.000 kb on + strand, within MPMX19_04672 at 58.000 kb on + strand, within MPMX19_04672 at 58.000 kb on + strand, within MPMX19_04672 at 58.000 kb on + strand, within MPMX19_04672 at 58.001 kb on - strand, within MPMX19_04672 at 58.001 kb on - strand, within MPMX19_04672 at 58.001 kb on - strand, within MPMX19_04672 at 58.001 kb on - strand, within MPMX19_04672 at 58.074 kb on + strand, within MPMX19_04672 at 58.074 kb on + strand, within MPMX19_04672 at 58.075 kb on - strand, within MPMX19_04672 at 58.075 kb on - strand, within MPMX19_04672 at 58.075 kb on - strand, within MPMX19_04672 at 58.075 kb on - strand, within MPMX19_04672 at 58.492 kb on + strand at 58.492 kb on + strand at 58.493 kb on - strand at 58.493 kb on - strand at 58.493 kb on - strand at 58.493 kb on - strand at 58.522 kb on + strand at 58.523 kb on - strand at 58.523 kb on - strand at 58.582 kb on - strand at 58.660 kb on + strand at 58.660 kb on + strand at 58.660 kb on + strand at 58.660 kb on + strand at 58.661 kb on - strand at 58.661 kb on - strand at 58.661 kb on - strand at 58.661 kb on - strand at 58.661 kb on - strand at 58.661 kb on - strand at 58.661 kb on - strand at 58.661 kb on - strand at 58.661 kb on - strand at 58.661 kb on - strand at 58.797 kb on + strand, within MPMX19_04673 at 58.983 kb on - strand, within MPMX19_04673 at 59.372 kb on + strand, within MPMX19_04673 at 59.372 kb on + strand, within MPMX19_04673 at 59.372 kb on + strand, within MPMX19_04673 at 59.373 kb on - strand, within MPMX19_04673 at 59.373 kb on - strand, within MPMX19_04673 at 59.373 kb on - strand, within MPMX19_04673 at 59.373 kb on - strand, within MPMX19_04673 at 59.373 kb on - strand, within MPMX19_04673 at 59.373 kb on - strand, within MPMX19_04673 at 59.373 kb on - strand, within MPMX19_04673
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 56,561 - MPMX19_04670 0.37 -1.3 56,716 + MPMX19_04670 0.65 -0.8 56,716 + MPMX19_04670 0.65 -0.8 56,716 + MPMX19_04670 0.65 -0.8 56,716 + MPMX19_04670 0.65 -0.3 56,716 + MPMX19_04670 0.65 -0.9 56,716 + MPMX19_04670 0.65 +1.5 56,717 - MPMX19_04670 0.65 +0.3 56,717 - MPMX19_04670 0.65 +1.2 56,717 - MPMX19_04670 0.65 -0.2 56,717 - MPMX19_04670 0.65 +0.8 56,717 - MPMX19_04670 0.65 +0.5 56,717 - MPMX19_04670 0.65 -1.7 56,717 - MPMX19_04670 0.65 +0.6 56,717 - MPMX19_04670 0.65 +0.7 56,717 - MPMX19_04670 0.65 -1.2 56,717 - MPMX19_04670 0.65 +0.5 56,717 - MPMX19_04670 0.65 +0.4 56,854 - MPMX19_04670 0.90 +0.1 56,854 - MPMX19_04670 0.90 -0.3 56,854 - MPMX19_04670 0.90 -0.3 56,854 - MPMX19_04670 0.90 +0.4 56,985 - -0.4 56,985 - +0.0 57,007 + -1.0 57,007 + +1.7 57,007 + -0.6 57,007 + -2.1 57,007 + -0.3 57,007 + -0.2 57,007 + +0.7 57,007 + -0.7 57,007 + -0.4 57,007 + +0.5 57,007 + -1.0 57,007 + -1.7 57,007 + +1.1 57,007 + -0.1 57,007 + +0.5 57,007 + +0.6 57,007 + +0.5 57,007 + +0.3 57,007 + +1.1 57,007 + +0.2 57,007 + +0.1 57,008 - +0.1 57,008 - +0.2 57,008 - -0.5 57,008 - +0.9 57,008 - -0.5 57,008 - -0.1 57,008 - +1.1 57,008 - -0.2 57,008 - +0.5 57,008 - -1.2 57,008 - +0.1 57,008 - +2.7 57,008 - -1.3 57,130 - MPMX19_04671 0.16 -0.6 57,451 + -2.2 57,451 + -1.1 57,451 + -0.1 57,452 + +0.1 57,452 - +0.3 57,452 - +0.7 57,452 - -0.6 57,452 - -0.1 57,452 - +1.0 57,452 - +0.3 57,526 + -0.9 57,526 + +0.1 57,526 + -0.5 57,527 - -0.7 57,616 + MPMX19_04672 0.10 -0.2 57,616 + MPMX19_04672 0.10 +0.4 57,616 + MPMX19_04672 0.10 +0.5 57,617 - MPMX19_04672 0.10 -0.5 57,617 - MPMX19_04672 0.10 +0.9 57,826 + MPMX19_04672 0.30 -1.3 57,826 + MPMX19_04672 0.30 -1.3 57,827 - MPMX19_04672 0.30 +0.8 57,827 - MPMX19_04672 0.30 -2.3 57,827 - MPMX19_04672 0.30 -0.6 57,850 + MPMX19_04672 0.32 +0.9 57,850 + MPMX19_04672 0.32 -0.7 57,850 + MPMX19_04672 0.32 -0.8 57,850 + MPMX19_04672 0.32 +0.4 57,850 + MPMX19_04672 0.32 -0.6 57,850 + MPMX19_04672 0.32 -1.4 57,850 + MPMX19_04672 0.32 -0.6 57,850 + MPMX19_04672 0.32 +0.1 57,851 - MPMX19_04672 0.32 -0.7 57,851 - MPMX19_04672 0.32 +0.7 57,851 - MPMX19_04672 0.32 -1.7 57,851 - MPMX19_04672 0.32 -0.8 57,851 - MPMX19_04672 0.32 -0.8 57,851 - MPMX19_04672 0.32 -1.3 57,895 + MPMX19_04672 0.37 -0.2 57,925 + MPMX19_04672 0.39 +0.4 57,925 + MPMX19_04672 0.39 -0.7 57,925 + MPMX19_04672 0.39 -2.6 57,925 + MPMX19_04672 0.39 -1.7 57,925 + MPMX19_04672 0.39 -0.1 57,925 + MPMX19_04672 0.39 +0.4 57,926 - MPMX19_04672 0.40 -0.5 57,926 - MPMX19_04672 0.40 -0.7 57,926 - MPMX19_04672 0.40 -1.8 57,926 - MPMX19_04672 0.40 +0.2 57,926 - MPMX19_04672 0.40 -0.3 57,926 - MPMX19_04672 0.40 +0.2 57,926 - MPMX19_04672 0.40 +1.1 58,000 + MPMX19_04672 0.47 -0.2 58,000 + MPMX19_04672 0.47 -1.2 58,000 + MPMX19_04672 0.47 -2.4 58,000 + MPMX19_04672 0.47 -1.3 58,000 + MPMX19_04672 0.47 -1.7 58,000 + MPMX19_04672 0.47 -1.3 58,000 + MPMX19_04672 0.47 -0.1 58,001 - MPMX19_04672 0.47 -2.2 58,001 - MPMX19_04672 0.47 -0.1 58,001 - MPMX19_04672 0.47 -1.2 58,001 - MPMX19_04672 0.47 +1.0 58,074 + MPMX19_04672 0.54 +0.5 58,074 + MPMX19_04672 0.54 -2.3 58,075 - MPMX19_04672 0.54 +0.2 58,075 - MPMX19_04672 0.54 +0.8 58,075 - MPMX19_04672 0.54 -1.5 58,075 - MPMX19_04672 0.54 -1.8 58,492 + +1.3 58,492 + -0.5 58,493 - +0.3 58,493 - -0.8 58,493 - -0.1 58,493 - -0.5 58,522 + -0.1 58,523 - -0.8 58,523 - -0.5 58,582 - +0.1 58,660 + +0.2 58,660 + -0.8 58,660 + -1.8 58,660 + -0.5 58,661 - -0.7 58,661 - +0.5 58,661 - -0.2 58,661 - +0.8 58,661 - -0.6 58,661 - -1.2 58,661 - -0.7 58,661 - +1.5 58,661 - -0.8 58,661 - +1.8 58,797 + MPMX19_04673 0.11 -0.1 58,983 - MPMX19_04673 0.26 -0.8 59,372 + MPMX19_04673 0.58 -0.3 59,372 + MPMX19_04673 0.58 -0.4 59,372 + MPMX19_04673 0.58 -1.0 59,373 - MPMX19_04673 0.58 -0.2 59,373 - MPMX19_04673 0.58 +1.1 59,373 - MPMX19_04673 0.58 -0.9 59,373 - MPMX19_04673 0.58 -2.2 59,373 - MPMX19_04673 0.58 -2.1 59,373 - MPMX19_04673 0.58 -2.2 59,373 - MPMX19_04673 0.58 -0.3
Or see this region's nucleotide sequence