Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04632

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04631 and MPMX19_04632 are separated by 52 nucleotidesMPMX19_04632 and MPMX19_04633 overlap by 4 nucleotides MPMX19_04631: MPMX19_04631 - hypothetical protein, at 7,045 to 9,363 _04631 MPMX19_04632: MPMX19_04632 - D-inositol-3-phosphate glycosyltransferase, at 9,416 to 10,588 _04632 MPMX19_04633: MPMX19_04633 - hypothetical protein, at 10,585 to 11,595 _04633 Position (kb) 9 10 11Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 8.557 kb on + strand, within MPMX19_04631at 8.557 kb on + strand, within MPMX19_04631at 8.557 kb on + strand, within MPMX19_04631at 8.557 kb on + strand, within MPMX19_04631at 8.557 kb on + strand, within MPMX19_04631at 8.558 kb on - strand, within MPMX19_04631at 8.558 kb on - strand, within MPMX19_04631at 8.558 kb on - strand, within MPMX19_04631at 8.558 kb on - strand, within MPMX19_04631at 8.558 kb on - strand, within MPMX19_04631at 8.660 kb on - strand, within MPMX19_04631at 9.094 kb on + strand, within MPMX19_04631at 9.095 kb on - strand, within MPMX19_04631at 9.179 kb on - strandat 9.179 kb on - strandat 9.311 kb on - strandat 9.311 kb on - strandat 9.311 kb on - strandat 9.311 kb on - strandat 9.341 kb on - strandat 9.341 kb on - strandat 9.437 kb on + strandat 9.437 kb on + strandat 9.438 kb on - strandat 9.438 kb on - strandat 9.438 kb on - strandat 9.494 kb on + strandat 9.524 kb on + strandat 9.525 kb on - strandat 9.611 kb on + strand, within MPMX19_04632at 9.611 kb on + strand, within MPMX19_04632at 9.611 kb on + strand, within MPMX19_04632at 9.611 kb on + strand, within MPMX19_04632at 9.611 kb on + strand, within MPMX19_04632at 9.611 kb on + strand, within MPMX19_04632at 9.611 kb on + strand, within MPMX19_04632at 9.612 kb on - strand, within MPMX19_04632at 9.612 kb on - strand, within MPMX19_04632at 9.612 kb on - strand, within MPMX19_04632at 9.620 kb on + strand, within MPMX19_04632at 9.620 kb on + strand, within MPMX19_04632at 9.620 kb on + strand, within MPMX19_04632at 9.620 kb on + strand, within MPMX19_04632at 9.620 kb on + strand, within MPMX19_04632at 9.621 kb on - strand, within MPMX19_04632at 9.621 kb on - strand, within MPMX19_04632at 9.668 kb on + strand, within MPMX19_04632at 9.669 kb on - strand, within MPMX19_04632at 9.669 kb on - strand, within MPMX19_04632at 9.743 kb on + strand, within MPMX19_04632at 9.744 kb on - strand, within MPMX19_04632at 9.744 kb on - strand, within MPMX19_04632at 9.744 kb on - strand, within MPMX19_04632at 9.744 kb on - strand, within MPMX19_04632at 9.764 kb on + strand, within MPMX19_04632at 9.764 kb on + strand, within MPMX19_04632at 9.764 kb on + strand, within MPMX19_04632at 9.764 kb on + strand, within MPMX19_04632at 9.764 kb on + strand, within MPMX19_04632at 9.764 kb on + strand, within MPMX19_04632at 9.764 kb on + strand, within MPMX19_04632at 9.764 kb on + strand, within MPMX19_04632at 9.764 kb on + strand, within MPMX19_04632at 9.765 kb on - strand, within MPMX19_04632at 9.765 kb on - strand, within MPMX19_04632at 9.765 kb on - strand, within MPMX19_04632at 9.765 kb on - strand, within MPMX19_04632at 9.765 kb on - strand, within MPMX19_04632at 9.765 kb on - strand, within MPMX19_04632at 9.765 kb on - strand, within MPMX19_04632at 9.765 kb on - strand, within MPMX19_04632at 9.765 kb on - strand, within MPMX19_04632at 9.765 kb on - strand, within MPMX19_04632at 9.779 kb on + strand, within MPMX19_04632at 9.780 kb on - strand, within MPMX19_04632at 9.788 kb on + strand, within MPMX19_04632at 9.788 kb on + strand, within MPMX19_04632at 9.788 kb on + strand, within MPMX19_04632at 9.789 kb on - strand, within MPMX19_04632at 9.789 kb on - strand, within MPMX19_04632at 9.789 kb on - strand, within MPMX19_04632at 9.830 kb on + strand, within MPMX19_04632at 9.830 kb on + strand, within MPMX19_04632at 9.830 kb on + strand, within MPMX19_04632at 9.830 kb on + strand, within MPMX19_04632at 9.830 kb on + strand, within MPMX19_04632at 9.830 kb on + strand, within MPMX19_04632at 9.831 kb on + strand, within MPMX19_04632at 9.831 kb on - strand, within MPMX19_04632at 9.831 kb on - strand, within MPMX19_04632at 9.831 kb on - strand, within MPMX19_04632at 9.831 kb on - strand, within MPMX19_04632at 9.831 kb on - strand, within MPMX19_04632at 9.831 kb on - strand, within MPMX19_04632at 9.932 kb on + strand, within MPMX19_04632at 9.932 kb on + strand, within MPMX19_04632at 9.932 kb on + strand, within MPMX19_04632at 9.933 kb on - strand, within MPMX19_04632at 10.025 kb on + strand, within MPMX19_04632at 10.025 kb on + strand, within MPMX19_04632at 10.025 kb on + strand, within MPMX19_04632at 10.025 kb on + strand, within MPMX19_04632at 10.025 kb on + strand, within MPMX19_04632at 10.026 kb on - strand, within MPMX19_04632at 10.026 kb on - strand, within MPMX19_04632at 10.026 kb on - strand, within MPMX19_04632at 10.026 kb on - strand, within MPMX19_04632at 10.026 kb on - strand, within MPMX19_04632at 10.026 kb on - strand, within MPMX19_04632at 10.026 kb on - strand, within MPMX19_04632at 10.052 kb on + strand, within MPMX19_04632at 10.052 kb on + strand, within MPMX19_04632at 10.053 kb on - strand, within MPMX19_04632at 10.053 kb on - strand, within MPMX19_04632at 10.053 kb on - strand, within MPMX19_04632at 10.208 kb on + strand, within MPMX19_04632at 10.208 kb on + strand, within MPMX19_04632at 10.208 kb on + strand, within MPMX19_04632at 10.208 kb on + strand, within MPMX19_04632at 10.208 kb on + strand, within MPMX19_04632at 10.208 kb on + strand, within MPMX19_04632at 10.208 kb on + strand, within MPMX19_04632at 10.208 kb on + strand, within MPMX19_04632at 10.208 kb on + strand, within MPMX19_04632at 10.208 kb on + strand, within MPMX19_04632at 10.208 kb on + strand, within MPMX19_04632at 10.208 kb on + strand, within MPMX19_04632at 10.208 kb on + strand, within MPMX19_04632at 10.209 kb on - strand, within MPMX19_04632at 10.209 kb on - strand, within MPMX19_04632at 10.690 kb on + strand, within MPMX19_04633at 10.691 kb on - strand, within MPMX19_04633at 10.875 kb on + strand, within MPMX19_04633at 10.875 kb on + strand, within MPMX19_04633at 10.875 kb on + strand, within MPMX19_04633at 10.876 kb on - strand, within MPMX19_04633at 10.876 kb on - strand, within MPMX19_04633at 10.876 kb on - strand, within MPMX19_04633at 10.876 kb on - strand, within MPMX19_04633at 10.896 kb on + strand, within MPMX19_04633at 10.897 kb on - strand, within MPMX19_04633at 11.279 kb on - strand, within MPMX19_04633at 11.279 kb on - strand, within MPMX19_04633

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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8,557 + MPMX19_04631 0.65 +1.3
8,557 + MPMX19_04631 0.65 -0.2
8,557 + MPMX19_04631 0.65 +1.1
8,557 + MPMX19_04631 0.65 -2.8
8,557 + MPMX19_04631 0.65 -0.7
8,558 - MPMX19_04631 0.65 +0.1
8,558 - MPMX19_04631 0.65 +0.6
8,558 - MPMX19_04631 0.65 +0.3
8,558 - MPMX19_04631 0.65 +2.2
8,558 - MPMX19_04631 0.65 -0.2
8,660 - MPMX19_04631 0.70 -0.4
9,094 + MPMX19_04631 0.88 +0.4
9,095 - MPMX19_04631 0.88 -1.1
9,179 - -0.1
9,179 - -0.4
9,311 - +0.8
9,311 - -0.8
9,311 - -0.7
9,311 - +0.3
9,341 - -0.1
9,341 - +0.1
9,437 + +0.1
9,437 + +0.5
9,438 - -1.7
9,438 - +0.4
9,438 - -0.6
9,494 + +0.7
9,524 + +0.1
9,525 - -0.5
9,611 + MPMX19_04632 0.17 +0.9
9,611 + MPMX19_04632 0.17 +1.4
9,611 + MPMX19_04632 0.17 -1.4
9,611 + MPMX19_04632 0.17 -0.1
9,611 + MPMX19_04632 0.17 -2.2
9,611 + MPMX19_04632 0.17 -0.5
9,611 + MPMX19_04632 0.17 -1.8
9,612 - MPMX19_04632 0.17 -1.2
9,612 - MPMX19_04632 0.17 -1.7
9,612 - MPMX19_04632 0.17 -1.2
9,620 + MPMX19_04632 0.17 -0.8
9,620 + MPMX19_04632 0.17 -0.6
9,620 + MPMX19_04632 0.17 +0.6
9,620 + MPMX19_04632 0.17 -0.1
9,620 + MPMX19_04632 0.17 +0.5
9,621 - MPMX19_04632 0.17 +0.4
9,621 - MPMX19_04632 0.17 -1.3
9,668 + MPMX19_04632 0.21 -0.8
9,669 - MPMX19_04632 0.22 +0.5
9,669 - MPMX19_04632 0.22 -0.1
9,743 + MPMX19_04632 0.28 -0.4
9,744 - MPMX19_04632 0.28 +0.5
9,744 - MPMX19_04632 0.28 +0.3
9,744 - MPMX19_04632 0.28 -0.7
9,744 - MPMX19_04632 0.28 -0.9
9,764 + MPMX19_04632 0.30 +0.2
9,764 + MPMX19_04632 0.30 -1.3
9,764 + MPMX19_04632 0.30 +1.1
9,764 + MPMX19_04632 0.30 +0.2
9,764 + MPMX19_04632 0.30 -2.2
9,764 + MPMX19_04632 0.30 -1.0
9,764 + MPMX19_04632 0.30 -0.3
9,764 + MPMX19_04632 0.30 -1.1
9,764 + MPMX19_04632 0.30 +0.5
9,765 - MPMX19_04632 0.30 -0.5
9,765 - MPMX19_04632 0.30 +0.4
9,765 - MPMX19_04632 0.30 -1.7
9,765 - MPMX19_04632 0.30 -0.4
9,765 - MPMX19_04632 0.30 -0.1
9,765 - MPMX19_04632 0.30 +0.5
9,765 - MPMX19_04632 0.30 +0.2
9,765 - MPMX19_04632 0.30 -0.2
9,765 - MPMX19_04632 0.30 -1.1
9,765 - MPMX19_04632 0.30 +0.7
9,779 + MPMX19_04632 0.31 +0.2
9,780 - MPMX19_04632 0.31 -0.2
9,788 + MPMX19_04632 0.32 +0.1
9,788 + MPMX19_04632 0.32 +1.5
9,788 + MPMX19_04632 0.32 -0.5
9,789 - MPMX19_04632 0.32 -0.8
9,789 - MPMX19_04632 0.32 -1.1
9,789 - MPMX19_04632 0.32 -0.7
9,830 + MPMX19_04632 0.35 -1.1
9,830 + MPMX19_04632 0.35 -2.7
9,830 + MPMX19_04632 0.35 +1.2
9,830 + MPMX19_04632 0.35 +0.2
9,830 + MPMX19_04632 0.35 +0.7
9,830 + MPMX19_04632 0.35 -0.1
9,831 + MPMX19_04632 0.35 -1.5
9,831 - MPMX19_04632 0.35 +1.1
9,831 - MPMX19_04632 0.35 -0.9
9,831 - MPMX19_04632 0.35 +0.2
9,831 - MPMX19_04632 0.35 -0.4
9,831 - MPMX19_04632 0.35 -1.2
9,831 - MPMX19_04632 0.35 +0.1
9,932 + MPMX19_04632 0.44 -0.8
9,932 + MPMX19_04632 0.44 +1.2
9,932 + MPMX19_04632 0.44 -0.8
9,933 - MPMX19_04632 0.44 -1.7
10,025 + MPMX19_04632 0.52 +0.3
10,025 + MPMX19_04632 0.52 -0.4
10,025 + MPMX19_04632 0.52 -0.5
10,025 + MPMX19_04632 0.52 -1.5
10,025 + MPMX19_04632 0.52 +0.1
10,026 - MPMX19_04632 0.52 -0.5
10,026 - MPMX19_04632 0.52 +0.0
10,026 - MPMX19_04632 0.52 +0.1
10,026 - MPMX19_04632 0.52 -1.0
10,026 - MPMX19_04632 0.52 -1.2
10,026 - MPMX19_04632 0.52 -1.8
10,026 - MPMX19_04632 0.52 -0.3
10,052 + MPMX19_04632 0.54 -0.1
10,052 + MPMX19_04632 0.54 +0.4
10,053 - MPMX19_04632 0.54 -0.7
10,053 - MPMX19_04632 0.54 -0.7
10,053 - MPMX19_04632 0.54 +0.1
10,208 + MPMX19_04632 0.68 +1.1
10,208 + MPMX19_04632 0.68 -1.9
10,208 + MPMX19_04632 0.68 -0.8
10,208 + MPMX19_04632 0.68 +0.3
10,208 + MPMX19_04632 0.68 -0.5
10,208 + MPMX19_04632 0.68 -1.7
10,208 + MPMX19_04632 0.68 -2.2
10,208 + MPMX19_04632 0.68 -0.9
10,208 + MPMX19_04632 0.68 -1.1
10,208 + MPMX19_04632 0.68 +0.3
10,208 + MPMX19_04632 0.68 +0.8
10,208 + MPMX19_04632 0.68 +1.5
10,208 + MPMX19_04632 0.68 +0.8
10,209 - MPMX19_04632 0.68 -0.8
10,209 - MPMX19_04632 0.68 -2.1
10,690 + MPMX19_04633 0.10 +0.7
10,691 - MPMX19_04633 0.10 -1.8
10,875 + MPMX19_04633 0.29 +1.1
10,875 + MPMX19_04633 0.29 +0.5
10,875 + MPMX19_04633 0.29 +1.3
10,876 - MPMX19_04633 0.29 +0.3
10,876 - MPMX19_04633 0.29 -0.0
10,876 - MPMX19_04633 0.29 +0.1
10,876 - MPMX19_04633 0.29 +0.6
10,896 + MPMX19_04633 0.31 -0.8
10,897 - MPMX19_04633 0.31 +1.8
11,279 - MPMX19_04633 0.69 +1.5
11,279 - MPMX19_04633 0.69 +1.3

Or see this region's nucleotide sequence