Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04564

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04562 and MPMX19_04563 are separated by 4 nucleotidesMPMX19_04563 and MPMX19_04564 are separated by 53 nucleotidesMPMX19_04564 and MPMX19_04565 are separated by 134 nucleotides MPMX19_04562: MPMX19_04562 - hypothetical protein, at 943,518 to 944,435 _04562 MPMX19_04563: MPMX19_04563 - hypothetical protein, at 944,440 to 944,754 _04563 MPMX19_04564: MPMX19_04564 - hypothetical protein, at 944,808 to 945,473 _04564 MPMX19_04565: MPMX19_04565 - HTH-type transcriptional regulator PgrR, at 945,608 to 946,528 _04565 MPMX19_04566: MPMX19_04566 - hypothetical protein, at 946,417 to 947,196 _04566 Position (kb) 944 945 946Strain fitness (log2 ratio) -2 -1 0 1 2at 943.864 kb on + strand, within MPMX19_04562at 943.864 kb on + strand, within MPMX19_04562at 943.865 kb on - strand, within MPMX19_04562at 943.865 kb on - strand, within MPMX19_04562at 944.056 kb on + strand, within MPMX19_04562at 944.056 kb on + strand, within MPMX19_04562at 944.056 kb on + strand, within MPMX19_04562at 944.056 kb on + strand, within MPMX19_04562at 944.057 kb on - strand, within MPMX19_04562at 944.083 kb on + strand, within MPMX19_04562at 944.083 kb on + strand, within MPMX19_04562at 944.083 kb on + strand, within MPMX19_04562at 944.083 kb on + strand, within MPMX19_04562at 944.083 kb on + strand, within MPMX19_04562at 944.083 kb on + strand, within MPMX19_04562at 944.083 kb on + strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.146 kb on + strand, within MPMX19_04562at 944.146 kb on + strand, within MPMX19_04562at 944.146 kb on + strand, within MPMX19_04562at 944.147 kb on - strand, within MPMX19_04562at 944.147 kb on - strand, within MPMX19_04562at 944.287 kb on + strand, within MPMX19_04562at 944.287 kb on + strand, within MPMX19_04562at 944.288 kb on - strand, within MPMX19_04562at 944.621 kb on + strand, within MPMX19_04563at 944.621 kb on + strand, within MPMX19_04563at 944.621 kb on + strand, within MPMX19_04563at 944.622 kb on - strand, within MPMX19_04563at 944.622 kb on - strand, within MPMX19_04563at 944.622 kb on - strand, within MPMX19_04563at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 945.046 kb on + strand, within MPMX19_04564at 945.046 kb on + strand, within MPMX19_04564at 945.046 kb on + strand, within MPMX19_04564at 945.047 kb on - strand, within MPMX19_04564at 945.047 kb on - strand, within MPMX19_04564at 945.047 kb on - strand, within MPMX19_04564at 945.220 kb on + strand, within MPMX19_04564at 945.220 kb on + strand, within MPMX19_04564at 945.220 kb on + strand, within MPMX19_04564at 945.220 kb on + strand, within MPMX19_04564at 945.221 kb on - strand, within MPMX19_04564at 945.241 kb on + strand, within MPMX19_04564at 945.242 kb on - strand, within MPMX19_04564at 945.280 kb on + strand, within MPMX19_04564at 945.281 kb on - strand, within MPMX19_04564at 945.538 kb on - strandat 945.555 kb on - strandat 945.589 kb on + strandat 945.589 kb on + strandat 945.590 kb on - strandat 945.590 kb on - strandat 945.947 kb on + strand, within MPMX19_04565at 945.948 kb on + strand, within MPMX19_04565at 945.948 kb on - strand, within MPMX19_04565at 945.948 kb on - strand, within MPMX19_04565at 945.948 kb on - strand, within MPMX19_04565at 945.948 kb on - strand, within MPMX19_04565at 945.948 kb on - strand, within MPMX19_04565at 945.948 kb on - strand, within MPMX19_04565at 945.959 kb on + strand, within MPMX19_04565at 946.118 kb on + strand, within MPMX19_04565at 946.118 kb on + strand, within MPMX19_04565at 946.118 kb on + strand, within MPMX19_04565at 946.118 kb on + strand, within MPMX19_04565at 946.119 kb on - strand, within MPMX19_04565at 946.119 kb on - strand, within MPMX19_04565

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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943,864 + MPMX19_04562 0.38 -0.7
943,864 + MPMX19_04562 0.38 -1.5
943,865 - MPMX19_04562 0.38 +0.6
943,865 - MPMX19_04562 0.38 -0.4
944,056 + MPMX19_04562 0.59 +1.1
944,056 + MPMX19_04562 0.59 +0.2
944,056 + MPMX19_04562 0.59 -0.6
944,056 + MPMX19_04562 0.59 -0.1
944,057 - MPMX19_04562 0.59 -1.0
944,083 + MPMX19_04562 0.62 -1.8
944,083 + MPMX19_04562 0.62 -0.1
944,083 + MPMX19_04562 0.62 -0.8
944,083 + MPMX19_04562 0.62 -0.1
944,083 + MPMX19_04562 0.62 -0.2
944,083 + MPMX19_04562 0.62 -0.0
944,083 + MPMX19_04562 0.62 -0.6
944,084 - MPMX19_04562 0.62 -0.7
944,084 - MPMX19_04562 0.62 +1.3
944,084 - MPMX19_04562 0.62 -0.9
944,084 - MPMX19_04562 0.62 -0.9
944,084 - MPMX19_04562 0.62 -0.1
944,084 - MPMX19_04562 0.62 -0.3
944,084 - MPMX19_04562 0.62 +0.1
944,084 - MPMX19_04562 0.62 -0.1
944,084 - MPMX19_04562 0.62 -0.9
944,146 + MPMX19_04562 0.68 -2.4
944,146 + MPMX19_04562 0.68 -0.0
944,146 + MPMX19_04562 0.68 -0.5
944,147 - MPMX19_04562 0.69 -1.3
944,147 - MPMX19_04562 0.69 -2.2
944,287 + MPMX19_04562 0.84 +0.5
944,287 + MPMX19_04562 0.84 +0.7
944,288 - MPMX19_04562 0.84 +0.5
944,621 + MPMX19_04563 0.57 -0.5
944,621 + MPMX19_04563 0.57 +0.8
944,621 + MPMX19_04563 0.57 -1.0
944,622 - MPMX19_04563 0.58 -0.8
944,622 - MPMX19_04563 0.58 -1.1
944,622 - MPMX19_04563 0.58 -0.9
944,923 + MPMX19_04564 0.17 +0.3
944,923 + MPMX19_04564 0.17 -1.8
944,923 + MPMX19_04564 0.17 +2.4
944,923 + MPMX19_04564 0.17 -1.3
944,923 + MPMX19_04564 0.17 +0.8
944,923 + MPMX19_04564 0.17 -1.3
944,923 + MPMX19_04564 0.17 -0.4
944,923 + MPMX19_04564 0.17 -0.7
944,923 + MPMX19_04564 0.17 -1.3
944,923 + MPMX19_04564 0.17 -0.2
944,923 + MPMX19_04564 0.17 +0.3
944,924 - MPMX19_04564 0.17 -0.3
944,924 - MPMX19_04564 0.17 -1.0
944,924 - MPMX19_04564 0.17 +0.4
944,924 - MPMX19_04564 0.17 -1.1
944,924 - MPMX19_04564 0.17 +0.5
944,924 - MPMX19_04564 0.17 +0.0
944,924 - MPMX19_04564 0.17 -0.0
944,924 - MPMX19_04564 0.17 +0.1
944,924 - MPMX19_04564 0.17 -0.6
944,924 - MPMX19_04564 0.17 -0.6
944,924 - MPMX19_04564 0.17 -0.8
944,924 - MPMX19_04564 0.17 -0.8
944,924 - MPMX19_04564 0.17 +0.1
944,924 - MPMX19_04564 0.17 +0.2
945,046 + MPMX19_04564 0.36 -0.6
945,046 + MPMX19_04564 0.36 -0.7
945,046 + MPMX19_04564 0.36 -0.3
945,047 - MPMX19_04564 0.36 +0.3
945,047 - MPMX19_04564 0.36 +0.8
945,047 - MPMX19_04564 0.36 -0.1
945,220 + MPMX19_04564 0.62 -0.3
945,220 + MPMX19_04564 0.62 -1.2
945,220 + MPMX19_04564 0.62 -0.8
945,220 + MPMX19_04564 0.62 +1.7
945,221 - MPMX19_04564 0.62 +0.1
945,241 + MPMX19_04564 0.65 +1.0
945,242 - MPMX19_04564 0.65 +0.8
945,280 + MPMX19_04564 0.71 +1.7
945,281 - MPMX19_04564 0.71 -0.3
945,538 - -1.3
945,555 - +0.3
945,589 + -0.6
945,589 + -0.8
945,590 - +1.3
945,590 - +0.1
945,947 + MPMX19_04565 0.37 -0.9
945,948 + MPMX19_04565 0.37 -0.1
945,948 - MPMX19_04565 0.37 +0.3
945,948 - MPMX19_04565 0.37 -0.7
945,948 - MPMX19_04565 0.37 +0.5
945,948 - MPMX19_04565 0.37 -1.8
945,948 - MPMX19_04565 0.37 +0.3
945,948 - MPMX19_04565 0.37 -0.5
945,959 + MPMX19_04565 0.38 -0.3
946,118 + MPMX19_04565 0.55 +0.7
946,118 + MPMX19_04565 0.55 -0.7
946,118 + MPMX19_04565 0.55 +0.7
946,118 + MPMX19_04565 0.55 -0.3
946,119 - MPMX19_04565 0.55 -1.5
946,119 - MPMX19_04565 0.55 -0.5

Or see this region's nucleotide sequence