Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04468 and MPMX19_04469 overlap by 56 nucleotides MPMX19_04469 and MPMX19_04470 are separated by 502 nucleotides
MPMX19_04468: MPMX19_04468 - hypothetical protein, at 834,381 to 835,286
_04468
MPMX19_04469: MPMX19_04469 - hypothetical protein, at 835,231 to 835,497
_04469
MPMX19_04470: MPMX19_04470 - hypothetical protein, at 836,000 to 836,410
_04470
Position (kb) 835
836 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 834.300 kb on + strand at 834.301 kb on - strand at 834.301 kb on - strand at 834.301 kb on - strand at 834.531 kb on + strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.954 kb on + strand, within MPMX19_04468 at 834.954 kb on + strand, within MPMX19_04468 at 834.955 kb on - strand, within MPMX19_04468 at 834.955 kb on - strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 835.006 kb on - strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.065 kb on + strand, within MPMX19_04468 at 835.065 kb on + strand, within MPMX19_04468 at 835.066 kb on - strand, within MPMX19_04468 at 835.066 kb on - strand, within MPMX19_04468 at 835.066 kb on - strand, within MPMX19_04468 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.468 kb on - strand, within MPMX19_04469 at 835.468 kb on - strand, within MPMX19_04469 at 835.468 kb on - strand, within MPMX19_04469 at 835.468 kb on - strand, within MPMX19_04469 at 835.802 kb on + strand at 835.802 kb on + strand at 835.803 kb on - strand at 835.805 kb on + strand at 835.806 kb on - strand at 835.806 kb on - strand at 835.806 kb on - strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.876 kb on + strand at 835.876 kb on + strand at 835.877 kb on - strand at 835.877 kb on - strand at 835.902 kb on + strand at 835.902 kb on + strand at 835.949 kb on + strand at 835.950 kb on - strand at 835.950 kb on - strand at 835.950 kb on - strand at 836.238 kb on - strand, within MPMX19_04470
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 834,300 + +0.5 834,301 - +0.4 834,301 - +0.2 834,301 - -2.0 834,531 + MPMX19_04468 0.17 -0.6 834,532 - MPMX19_04468 0.17 -1.1 834,532 - MPMX19_04468 0.17 +0.2 834,532 - MPMX19_04468 0.17 +0.0 834,532 - MPMX19_04468 0.17 -2.4 834,765 + MPMX19_04468 0.42 +0.9 834,765 + MPMX19_04468 0.42 -1.8 834,765 + MPMX19_04468 0.42 +0.1 834,765 + MPMX19_04468 0.42 -0.5 834,765 + MPMX19_04468 0.42 -0.0 834,765 + MPMX19_04468 0.42 -1.1 834,765 + MPMX19_04468 0.42 -0.7 834,765 + MPMX19_04468 0.42 -0.9 834,765 + MPMX19_04468 0.42 -1.1 834,765 + MPMX19_04468 0.42 -0.4 834,766 - MPMX19_04468 0.42 -2.1 834,766 - MPMX19_04468 0.42 -0.9 834,766 - MPMX19_04468 0.42 +0.1 834,766 - MPMX19_04468 0.42 -0.4 834,766 - MPMX19_04468 0.42 +1.4 834,954 + MPMX19_04468 0.63 +1.3 834,954 + MPMX19_04468 0.63 -0.6 834,955 - MPMX19_04468 0.63 -1.0 834,955 - MPMX19_04468 0.63 +0.6 834,964 + MPMX19_04468 0.64 -1.7 834,964 + MPMX19_04468 0.64 +0.7 834,964 + MPMX19_04468 0.64 +1.2 834,964 + MPMX19_04468 0.64 -0.9 834,964 + MPMX19_04468 0.64 -1.1 834,964 + MPMX19_04468 0.64 -1.9 834,964 + MPMX19_04468 0.64 -2.3 834,964 + MPMX19_04468 0.64 +1.2 834,964 + MPMX19_04468 0.64 -0.1 834,964 + MPMX19_04468 0.64 -1.1 834,964 + MPMX19_04468 0.64 -0.8 834,964 + MPMX19_04468 0.64 +0.4 834,964 + MPMX19_04468 0.64 +0.1 834,965 - MPMX19_04468 0.64 -1.1 834,965 - MPMX19_04468 0.64 -1.1 834,965 - MPMX19_04468 0.64 -0.3 834,965 - MPMX19_04468 0.64 -1.1 834,965 - MPMX19_04468 0.64 -1.0 834,965 - MPMX19_04468 0.64 -1.5 834,965 - MPMX19_04468 0.64 +0.4 834,965 - MPMX19_04468 0.64 -0.8 834,965 - MPMX19_04468 0.64 +0.1 834,965 - MPMX19_04468 0.64 +0.6 834,965 - MPMX19_04468 0.64 -0.0 834,965 - MPMX19_04468 0.64 +0.9 834,965 - MPMX19_04468 0.64 -1.9 835,006 - MPMX19_04468 0.69 -1.3 835,047 + MPMX19_04468 0.74 +0.3 835,047 + MPMX19_04468 0.74 -0.5 835,047 + MPMX19_04468 0.74 +1.0 835,047 + MPMX19_04468 0.74 +0.7 835,047 + MPMX19_04468 0.74 -0.2 835,047 + MPMX19_04468 0.74 +0.0 835,047 + MPMX19_04468 0.74 -1.5 835,047 + MPMX19_04468 0.74 -1.3 835,047 + MPMX19_04468 0.74 +0.1 835,047 + MPMX19_04468 0.74 -2.3 835,048 - MPMX19_04468 0.74 +1.5 835,048 - MPMX19_04468 0.74 -0.4 835,048 - MPMX19_04468 0.74 -0.1 835,048 - MPMX19_04468 0.74 -0.1 835,048 - MPMX19_04468 0.74 -0.4 835,048 - MPMX19_04468 0.74 -0.9 835,048 - MPMX19_04468 0.74 -0.3 835,048 - MPMX19_04468 0.74 +0.7 835,048 - MPMX19_04468 0.74 -1.5 835,048 - MPMX19_04468 0.74 -0.2 835,048 - MPMX19_04468 0.74 -0.5 835,065 + MPMX19_04468 0.75 -0.3 835,065 + MPMX19_04468 0.75 -1.0 835,066 - MPMX19_04468 0.76 -0.5 835,066 - MPMX19_04468 0.76 -0.6 835,066 - MPMX19_04468 0.76 +0.4 835,467 + MPMX19_04469 0.88 -0.8 835,467 + MPMX19_04469 0.88 -1.1 835,467 + MPMX19_04469 0.88 +0.8 835,467 + MPMX19_04469 0.88 -1.1 835,467 + MPMX19_04469 0.88 -0.6 835,467 + MPMX19_04469 0.88 -0.8 835,467 + MPMX19_04469 0.88 -0.3 835,468 - MPMX19_04469 0.89 -1.5 835,468 - MPMX19_04469 0.89 -1.3 835,468 - MPMX19_04469 0.89 -1.8 835,468 - MPMX19_04469 0.89 -0.1 835,802 + -1.5 835,802 + -1.6 835,803 - -1.6 835,805 + -1.0 835,806 - +0.1 835,806 - -1.6 835,806 - +1.1 835,813 + -0.9 835,813 + -0.2 835,813 + -1.1 835,813 + -0.8 835,813 + +0.4 835,813 + +0.3 835,813 + -0.6 835,813 + +0.3 835,813 + -1.7 835,814 - -1.4 835,814 - -0.5 835,814 - +0.9 835,814 - -0.7 835,814 - +0.7 835,814 - -0.1 835,814 - +0.1 835,814 - -1.1 835,814 - -2.2 835,814 - +0.7 835,814 - -1.6 835,814 - -0.6 835,817 + -0.7 835,817 + +0.3 835,817 + -1.3 835,817 + +0.4 835,817 + -0.3 835,817 + +2.0 835,818 - -0.5 835,818 - -0.0 835,818 - +1.3 835,818 - -0.6 835,818 - +3.0 835,818 - -0.3 835,837 + -0.8 835,837 + -0.9 835,837 + -0.8 835,837 + -1.0 835,837 + +0.7 835,837 + -1.5 835,837 + +1.4 835,837 + -0.4 835,837 + -1.3 835,837 + -0.1 835,837 + -1.6 835,837 + -1.1 835,837 + +0.0 835,837 + -1.9 835,837 + +0.1 835,837 + -1.0 835,837 + -0.1 835,838 - -1.2 835,838 - +0.7 835,838 - -0.6 835,838 - +0.4 835,838 - -0.3 835,838 - +0.5 835,838 - -0.9 835,838 - -1.0 835,838 - +0.4 835,838 - +0.2 835,838 - -1.5 835,838 - -1.2 835,838 - +0.3 835,838 - +0.5 835,876 + -0.8 835,876 + +0.7 835,877 - -0.7 835,877 - -1.0 835,902 + +1.1 835,902 + +0.1 835,949 + -1.1 835,950 - -2.1 835,950 - -1.3 835,950 - +0.9 836,238 - MPMX19_04470 0.58 +0.5
Or see this region's nucleotide sequence