Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04459 and MPMX19_04460 are separated by 200 nucleotides MPMX19_04460 and MPMX19_04461 are separated by 44 nucleotides MPMX19_04461 and MPMX19_04462 are separated by 154 nucleotides
MPMX19_04459: MPMX19_04459 - hypothetical protein, at 826,262 to 827,056
_04459
MPMX19_04460: MPMX19_04460 - Pyruvate kinase, at 827,257 to 828,723
_04460
MPMX19_04461: MPMX19_04461 - HTH-type transcriptional repressor RspR, at 828,768 to 829,457
_04461
MPMX19_04462: MPMX19_04462 - Thiamine-phosphate synthase, at 829,612 to 830,307
_04462
Position (kb) 827
828
829 Strain fitness (log2 ratio) -2
-1
0
1
2 at 826.257 kb on + strand at 826.274 kb on - strand at 826.477 kb on - strand, within MPMX19_04459 at 826.477 kb on - strand, within MPMX19_04459 at 826.477 kb on - strand, within MPMX19_04459 at 826.477 kb on - strand, within MPMX19_04459 at 826.477 kb on - strand, within MPMX19_04459 at 826.477 kb on - strand, within MPMX19_04459 at 826.599 kb on + strand, within MPMX19_04459 at 826.599 kb on + strand, within MPMX19_04459 at 826.599 kb on + strand, within MPMX19_04459 at 826.599 kb on + strand, within MPMX19_04459 at 826.599 kb on + strand, within MPMX19_04459 at 826.599 kb on + strand, within MPMX19_04459 at 826.599 kb on + strand, within MPMX19_04459 at 826.599 kb on + strand, within MPMX19_04459 at 826.599 kb on + strand, within MPMX19_04459 at 826.599 kb on + strand, within MPMX19_04459 at 826.599 kb on + strand, within MPMX19_04459 at 826.599 kb on + strand, within MPMX19_04459 at 826.600 kb on - strand, within MPMX19_04459 at 826.600 kb on - strand, within MPMX19_04459 at 826.600 kb on - strand, within MPMX19_04459 at 826.600 kb on - strand, within MPMX19_04459 at 826.600 kb on - strand, within MPMX19_04459 at 826.600 kb on - strand, within MPMX19_04459 at 826.600 kb on - strand, within MPMX19_04459 at 826.600 kb on - strand, within MPMX19_04459 at 826.600 kb on - strand, within MPMX19_04459 at 826.600 kb on - strand, within MPMX19_04459 at 826.600 kb on - strand, within MPMX19_04459 at 826.600 kb on - strand, within MPMX19_04459 at 827.127 kb on + strand at 827.128 kb on - strand at 827.128 kb on - strand at 827.158 kb on + strand at 828.154 kb on + strand, within MPMX19_04460 at 828.154 kb on + strand, within MPMX19_04460 at 828.154 kb on + strand, within MPMX19_04460 at 828.154 kb on + strand, within MPMX19_04460 at 828.154 kb on + strand, within MPMX19_04460 at 828.154 kb on + strand, within MPMX19_04460 at 828.155 kb on - strand, within MPMX19_04460 at 828.155 kb on - strand, within MPMX19_04460 at 828.155 kb on - strand, within MPMX19_04460 at 828.155 kb on - strand, within MPMX19_04460 at 828.155 kb on - strand, within MPMX19_04460 at 828.155 kb on - strand, within MPMX19_04460 at 828.382 kb on + strand, within MPMX19_04460 at 828.382 kb on + strand, within MPMX19_04460 at 828.382 kb on + strand, within MPMX19_04460 at 828.382 kb on + strand, within MPMX19_04460 at 828.382 kb on + strand, within MPMX19_04460 at 828.382 kb on + strand, within MPMX19_04460 at 828.382 kb on + strand, within MPMX19_04460 at 828.382 kb on + strand, within MPMX19_04460 at 828.382 kb on + strand, within MPMX19_04460 at 828.382 kb on + strand, within MPMX19_04460 at 828.383 kb on - strand, within MPMX19_04460 at 828.383 kb on - strand, within MPMX19_04460 at 828.383 kb on - strand, within MPMX19_04460 at 828.383 kb on - strand, within MPMX19_04460 at 828.383 kb on - strand, within MPMX19_04460 at 828.383 kb on - strand, within MPMX19_04460 at 828.383 kb on - strand, within MPMX19_04460 at 828.383 kb on - strand, within MPMX19_04460 at 828.383 kb on - strand, within MPMX19_04460 at 828.383 kb on - strand, within MPMX19_04460 at 828.678 kb on + strand at 828.678 kb on + strand at 828.678 kb on + strand at 828.678 kb on + strand at 828.678 kb on + strand at 828.679 kb on - strand at 828.679 kb on - strand at 828.679 kb on - strand at 828.679 kb on - strand at 828.702 kb on + strand at 828.703 kb on - strand at 828.703 kb on - strand at 828.703 kb on - strand at 828.703 kb on - strand at 828.747 kb on + strand at 828.747 kb on + strand at 828.747 kb on + strand at 828.747 kb on + strand at 828.747 kb on + strand at 828.748 kb on - strand at 828.748 kb on - strand at 828.748 kb on - strand at 828.769 kb on + strand at 828.769 kb on + strand at 828.770 kb on - strand at 829.042 kb on + strand, within MPMX19_04461 at 829.042 kb on + strand, within MPMX19_04461 at 829.043 kb on - strand, within MPMX19_04461 at 829.043 kb on - strand, within MPMX19_04461 at 829.354 kb on + strand, within MPMX19_04461 at 829.354 kb on + strand, within MPMX19_04461 at 829.354 kb on + strand, within MPMX19_04461 at 829.354 kb on + strand, within MPMX19_04461 at 829.354 kb on + strand, within MPMX19_04461 at 829.354 kb on + strand, within MPMX19_04461 at 829.354 kb on + strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.393 kb on + strand at 829.393 kb on + strand at 829.393 kb on + strand at 829.393 kb on + strand at 829.394 kb on - strand at 829.394 kb on - strand at 829.394 kb on - strand at 829.394 kb on - strand at 829.394 kb on - strand at 829.537 kb on + strand at 829.538 kb on - strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.546 kb on + strand at 829.546 kb on + strand at 829.546 kb on + strand at 829.546 kb on + strand at 829.546 kb on + strand at 829.547 kb on - strand at 829.547 kb on - strand at 829.601 kb on + strand at 829.601 kb on + strand at 829.601 kb on + strand at 829.601 kb on + strand at 829.602 kb on - strand at 829.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 826,257 + -0.3 826,274 - -0.5 826,477 - MPMX19_04459 0.27 -1.6 826,477 - MPMX19_04459 0.27 -0.5 826,477 - MPMX19_04459 0.27 -0.4 826,477 - MPMX19_04459 0.27 -1.2 826,477 - MPMX19_04459 0.27 -0.1 826,477 - MPMX19_04459 0.27 +0.3 826,599 + MPMX19_04459 0.42 -1.2 826,599 + MPMX19_04459 0.42 -0.8 826,599 + MPMX19_04459 0.42 -0.3 826,599 + MPMX19_04459 0.42 -1.1 826,599 + MPMX19_04459 0.42 +0.1 826,599 + MPMX19_04459 0.42 -0.6 826,599 + MPMX19_04459 0.42 +0.1 826,599 + MPMX19_04459 0.42 +0.7 826,599 + MPMX19_04459 0.42 -0.8 826,599 + MPMX19_04459 0.42 -0.5 826,599 + MPMX19_04459 0.42 +0.5 826,599 + MPMX19_04459 0.42 -1.0 826,600 - MPMX19_04459 0.43 -0.4 826,600 - MPMX19_04459 0.43 -0.0 826,600 - MPMX19_04459 0.43 -1.5 826,600 - MPMX19_04459 0.43 -0.0 826,600 - MPMX19_04459 0.43 +0.7 826,600 - MPMX19_04459 0.43 +1.2 826,600 - MPMX19_04459 0.43 -0.5 826,600 - MPMX19_04459 0.43 -0.9 826,600 - MPMX19_04459 0.43 +0.5 826,600 - MPMX19_04459 0.43 -0.5 826,600 - MPMX19_04459 0.43 -0.8 826,600 - MPMX19_04459 0.43 -0.4 827,127 + -1.1 827,128 - +0.1 827,128 - -0.2 827,158 + -0.8 828,154 + MPMX19_04460 0.61 -0.6 828,154 + MPMX19_04460 0.61 +0.3 828,154 + MPMX19_04460 0.61 -0.8 828,154 + MPMX19_04460 0.61 -1.0 828,154 + MPMX19_04460 0.61 +0.1 828,154 + MPMX19_04460 0.61 -0.0 828,155 - MPMX19_04460 0.61 +0.7 828,155 - MPMX19_04460 0.61 +1.1 828,155 - MPMX19_04460 0.61 -0.2 828,155 - MPMX19_04460 0.61 +0.4 828,155 - MPMX19_04460 0.61 +0.8 828,155 - MPMX19_04460 0.61 +1.4 828,382 + MPMX19_04460 0.77 -0.3 828,382 + MPMX19_04460 0.77 +0.4 828,382 + MPMX19_04460 0.77 -0.5 828,382 + MPMX19_04460 0.77 -1.9 828,382 + MPMX19_04460 0.77 +0.3 828,382 + MPMX19_04460 0.77 +0.5 828,382 + MPMX19_04460 0.77 -0.1 828,382 + MPMX19_04460 0.77 -0.0 828,382 + MPMX19_04460 0.77 +0.9 828,382 + MPMX19_04460 0.77 -0.5 828,383 - MPMX19_04460 0.77 +0.2 828,383 - MPMX19_04460 0.77 -1.6 828,383 - MPMX19_04460 0.77 -0.0 828,383 - MPMX19_04460 0.77 +0.1 828,383 - MPMX19_04460 0.77 -0.4 828,383 - MPMX19_04460 0.77 +2.0 828,383 - MPMX19_04460 0.77 -0.5 828,383 - MPMX19_04460 0.77 +0.3 828,383 - MPMX19_04460 0.77 -1.7 828,383 - MPMX19_04460 0.77 -0.3 828,678 + +1.0 828,678 + -0.6 828,678 + -0.4 828,678 + +1.7 828,678 + +0.5 828,679 - -0.6 828,679 - +0.5 828,679 - +0.4 828,679 - -0.8 828,702 + +0.5 828,703 - -0.8 828,703 - -0.8 828,703 - +0.4 828,703 - -0.6 828,747 + -1.6 828,747 + +0.5 828,747 + -0.6 828,747 + +1.7 828,747 + -0.6 828,748 - +0.2 828,748 - +1.2 828,748 - +0.4 828,769 + -0.0 828,769 + -1.3 828,770 - -0.4 829,042 + MPMX19_04461 0.40 +0.5 829,042 + MPMX19_04461 0.40 -0.1 829,043 - MPMX19_04461 0.40 +1.7 829,043 - MPMX19_04461 0.40 +0.6 829,354 + MPMX19_04461 0.85 -0.1 829,354 + MPMX19_04461 0.85 -0.6 829,354 + MPMX19_04461 0.85 +0.0 829,354 + MPMX19_04461 0.85 -1.6 829,354 + MPMX19_04461 0.85 +0.4 829,354 + MPMX19_04461 0.85 -1.0 829,354 + MPMX19_04461 0.85 -0.1 829,355 - MPMX19_04461 0.85 -1.8 829,355 - MPMX19_04461 0.85 +0.1 829,355 - MPMX19_04461 0.85 +0.1 829,355 - MPMX19_04461 0.85 -1.2 829,355 - MPMX19_04461 0.85 +0.0 829,355 - MPMX19_04461 0.85 -0.5 829,355 - MPMX19_04461 0.85 -1.2 829,355 - MPMX19_04461 0.85 -1.0 829,355 - MPMX19_04461 0.85 -0.9 829,355 - MPMX19_04461 0.85 +0.5 829,393 + +0.6 829,393 + -0.3 829,393 + -1.1 829,393 + -0.1 829,394 - -0.9 829,394 - -1.4 829,394 - -0.1 829,394 - -2.0 829,394 - -1.5 829,537 + -0.2 829,538 - -0.6 829,542 + -0.5 829,542 + -0.7 829,542 + +0.3 829,542 + -0.4 829,542 + -1.8 829,542 + -0.5 829,542 + +0.4 829,542 + +0.3 829,542 + -0.5 829,542 + +0.1 829,543 - -0.7 829,543 - +0.4 829,543 - -1.6 829,543 - -0.8 829,543 - +0.0 829,543 - -0.6 829,543 - -1.4 829,543 - -0.7 829,543 - -0.5 829,543 - -0.2 829,546 + -1.0 829,546 + -0.6 829,546 + +0.1 829,546 + +0.7 829,546 + -2.3 829,547 - -0.3 829,547 - -1.4 829,601 + +0.5 829,601 + +0.1 829,601 + +0.4 829,601 + -1.6 829,602 - -0.3 829,602 - +0.1
Or see this region's nucleotide sequence