Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04395 and MPMX19_04396 are separated by 121 nucleotides MPMX19_04396 and MPMX19_04397 overlap by 4 nucleotides
MPMX19_04395: MPMX19_04395 - Riboflavin transporter RibZ, at 759,786 to 761,216
_04395
MPMX19_04396: MPMX19_04396 - HTH-type transcriptional regulator HmrR, at 761,338 to 761,736
_04396
MPMX19_04397: MPMX19_04397 - Copper-exporting P-type ATPase, at 761,733 to 764,186
_04397
Position (kb) 761
762 Strain fitness (log2 ratio) -2
-1
0
1
2 at 760.462 kb on + strand, within MPMX19_04395 at 760.463 kb on - strand, within MPMX19_04395 at 760.717 kb on + strand, within MPMX19_04395 at 760.717 kb on + strand, within MPMX19_04395 at 760.718 kb on - strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.751 kb on - strand, within MPMX19_04395 at 760.751 kb on - strand, within MPMX19_04395 at 760.751 kb on - strand, within MPMX19_04395 at 760.751 kb on - strand, within MPMX19_04395 at 760.751 kb on - strand, within MPMX19_04395 at 760.751 kb on - strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.897 kb on + strand, within MPMX19_04395 at 760.897 kb on + strand, within MPMX19_04395 at 760.897 kb on + strand, within MPMX19_04395 at 760.897 kb on + strand, within MPMX19_04395 at 760.897 kb on + strand, within MPMX19_04395 at 760.897 kb on + strand, within MPMX19_04395 at 760.898 kb on - strand, within MPMX19_04395 at 760.898 kb on - strand, within MPMX19_04395 at 760.898 kb on - strand, within MPMX19_04395 at 760.898 kb on - strand, within MPMX19_04395 at 760.898 kb on - strand, within MPMX19_04395 at 760.969 kb on + strand, within MPMX19_04395 at 760.970 kb on - strand, within MPMX19_04395 at 761.104 kb on + strand at 761.104 kb on + strand at 761.105 kb on - strand at 761.105 kb on - strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.292 kb on + strand at 761.292 kb on + strand at 761.292 kb on + strand at 761.292 kb on + strand at 761.292 kb on + strand at 761.292 kb on + strand at 761.293 kb on - strand at 761.293 kb on - strand at 761.293 kb on - strand at 761.293 kb on - strand at 761.293 kb on - strand at 761.293 kb on - strand at 761.293 kb on - strand at 761.609 kb on + strand, within MPMX19_04396 at 761.609 kb on + strand, within MPMX19_04396 at 761.609 kb on + strand, within MPMX19_04396 at 761.609 kb on + strand, within MPMX19_04396 at 761.609 kb on + strand, within MPMX19_04396 at 761.609 kb on + strand, within MPMX19_04396 at 761.610 kb on - strand, within MPMX19_04396 at 761.610 kb on - strand, within MPMX19_04396 at 761.610 kb on - strand, within MPMX19_04396 at 761.619 kb on - strand, within MPMX19_04396 at 761.666 kb on + strand, within MPMX19_04396 at 761.666 kb on + strand, within MPMX19_04396 at 761.666 kb on + strand, within MPMX19_04396 at 761.669 kb on + strand, within MPMX19_04396 at 761.670 kb on - strand, within MPMX19_04396 at 761.893 kb on + strand at 761.893 kb on + strand at 761.893 kb on + strand at 761.893 kb on + strand at 761.893 kb on + strand at 761.894 kb on - strand at 761.894 kb on - strand at 761.894 kb on - strand at 761.894 kb on - strand at 761.894 kb on - strand at 761.894 kb on - strand at 761.894 kb on - strand at 761.894 kb on - strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 760,462 + MPMX19_04395 0.47 -0.7 760,463 - MPMX19_04395 0.47 +0.1 760,717 + MPMX19_04395 0.65 -0.3 760,717 + MPMX19_04395 0.65 -2.2 760,718 - MPMX19_04395 0.65 +0.7 760,750 + MPMX19_04395 0.67 -2.3 760,750 + MPMX19_04395 0.67 -0.1 760,750 + MPMX19_04395 0.67 -0.5 760,750 + MPMX19_04395 0.67 -0.3 760,750 + MPMX19_04395 0.67 -0.1 760,750 + MPMX19_04395 0.67 +0.7 760,750 + MPMX19_04395 0.67 -0.2 760,750 + MPMX19_04395 0.67 -0.9 760,751 - MPMX19_04395 0.67 -0.1 760,751 - MPMX19_04395 0.67 +0.3 760,751 - MPMX19_04395 0.67 -0.6 760,751 - MPMX19_04395 0.67 +0.2 760,751 - MPMX19_04395 0.67 -2.0 760,751 - MPMX19_04395 0.67 -1.9 760,754 + MPMX19_04395 0.68 -0.3 760,754 + MPMX19_04395 0.68 +2.3 760,754 + MPMX19_04395 0.68 +0.8 760,754 + MPMX19_04395 0.68 -0.2 760,754 + MPMX19_04395 0.68 +0.9 760,754 + MPMX19_04395 0.68 +1.3 760,754 + MPMX19_04395 0.68 +0.3 760,754 + MPMX19_04395 0.68 -0.3 760,754 + MPMX19_04395 0.68 +0.4 760,754 + MPMX19_04395 0.68 -1.5 760,754 + MPMX19_04395 0.68 -0.3 760,754 + MPMX19_04395 0.68 +0.8 760,754 + MPMX19_04395 0.68 -0.3 760,754 + MPMX19_04395 0.68 -0.8 760,754 + MPMX19_04395 0.68 -0.6 760,754 + MPMX19_04395 0.68 +0.3 760,754 + MPMX19_04395 0.68 -0.7 760,754 + MPMX19_04395 0.68 -0.9 760,754 + MPMX19_04395 0.68 +0.2 760,755 - MPMX19_04395 0.68 -1.7 760,755 - MPMX19_04395 0.68 -2.2 760,755 - MPMX19_04395 0.68 -1.1 760,755 - MPMX19_04395 0.68 +1.7 760,755 - MPMX19_04395 0.68 -1.6 760,755 - MPMX19_04395 0.68 -0.6 760,755 - MPMX19_04395 0.68 -0.4 760,755 - MPMX19_04395 0.68 -1.3 760,755 - MPMX19_04395 0.68 -1.4 760,755 - MPMX19_04395 0.68 -0.5 760,755 - MPMX19_04395 0.68 +0.2 760,755 - MPMX19_04395 0.68 -0.8 760,897 + MPMX19_04395 0.78 +0.7 760,897 + MPMX19_04395 0.78 +0.1 760,897 + MPMX19_04395 0.78 +0.1 760,897 + MPMX19_04395 0.78 -0.5 760,897 + MPMX19_04395 0.78 -0.7 760,897 + MPMX19_04395 0.78 +0.1 760,898 - MPMX19_04395 0.78 -0.9 760,898 - MPMX19_04395 0.78 +0.4 760,898 - MPMX19_04395 0.78 -0.2 760,898 - MPMX19_04395 0.78 -1.0 760,898 - MPMX19_04395 0.78 -0.8 760,969 + MPMX19_04395 0.83 -0.9 760,970 - MPMX19_04395 0.83 -1.5 761,104 + -0.9 761,104 + +0.3 761,105 - -1.1 761,105 - +0.3 761,216 + -0.9 761,216 + -1.8 761,216 + -0.1 761,216 + +0.2 761,216 + -0.3 761,216 + -0.2 761,216 + +1.4 761,216 + +0.3 761,216 + -1.9 761,216 + -1.0 761,216 + -0.1 761,216 + -0.7 761,216 + +0.3 761,216 + -1.9 761,216 + -1.1 761,216 + -1.3 761,216 + +0.3 761,216 + -0.3 761,216 + -0.9 761,217 - +0.7 761,217 - -0.8 761,217 - -0.3 761,217 - -0.6 761,217 - -0.5 761,217 - -0.7 761,217 - -1.2 761,217 - -0.4 761,217 - -1.1 761,217 - -0.7 761,217 - -0.1 761,217 - -0.0 761,217 - +0.0 761,217 - -0.5 761,217 - -1.5 761,217 - -1.9 761,217 - +0.4 761,217 - -0.2 761,217 - -0.1 761,217 - -2.0 761,292 + -0.1 761,292 + -1.0 761,292 + -0.3 761,292 + -1.1 761,292 + -0.9 761,292 + +1.0 761,293 - -0.3 761,293 - +0.3 761,293 - +0.7 761,293 - +0.2 761,293 - -1.4 761,293 - -1.4 761,293 - -0.3 761,609 + MPMX19_04396 0.68 +1.3 761,609 + MPMX19_04396 0.68 +1.0 761,609 + MPMX19_04396 0.68 -0.3 761,609 + MPMX19_04396 0.68 +2.3 761,609 + MPMX19_04396 0.68 +0.1 761,609 + MPMX19_04396 0.68 +0.3 761,610 - MPMX19_04396 0.68 +0.2 761,610 - MPMX19_04396 0.68 +1.3 761,610 - MPMX19_04396 0.68 -0.9 761,619 - MPMX19_04396 0.70 +0.4 761,666 + MPMX19_04396 0.82 +0.9 761,666 + MPMX19_04396 0.82 +0.3 761,666 + MPMX19_04396 0.82 +0.8 761,669 + MPMX19_04396 0.83 -1.6 761,670 - MPMX19_04396 0.83 -0.8 761,893 + -0.3 761,893 + +0.4 761,893 + -0.3 761,893 + -0.3 761,893 + -0.5 761,894 - +0.9 761,894 - -0.2 761,894 - -0.3 761,894 - -1.1 761,894 - -0.3 761,894 - +0.5 761,894 - -0.1 761,894 - +0.7 761,932 + -1.9 761,932 + +1.4 761,932 + -0.1 761,932 + -2.6 761,932 + -0.3 761,932 + +0.9 761,932 + +1.1 761,932 + +1.3 761,932 + +0.3 761,932 + +0.2 761,932 + -1.1 761,933 - -0.0 761,933 - +0.1 761,933 - -0.9 761,933 - +0.4 761,933 - -1.7 761,933 - -1.2 761,933 - -0.8 761,933 - +0.9 761,933 - +0.1 761,933 - +0.1 761,933 - -1.1 761,933 - +1.5 761,933 - -1.7 761,933 - -1.1
Or see this region's nucleotide sequence