Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04318

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04316 and MPMX19_04317 are separated by 18 nucleotidesMPMX19_04317 and MPMX19_04318 are separated by 27 nucleotidesMPMX19_04318 and MPMX19_04319 are separated by 74 nucleotides MPMX19_04316: MPMX19_04316 - hypothetical protein, at 677,896 to 681,681 _04316 MPMX19_04317: MPMX19_04317 - hypothetical protein, at 681,700 to 682,542 _04317 MPMX19_04318: MPMX19_04318 - hypothetical protein, at 682,570 to 682,902 _04318 MPMX19_04319: MPMX19_04319 - Alanine--tRNA ligase, at 682,977 to 685,646 _04319 Position (kb) 682 683Strain fitness (log2 ratio) -3 -2 -1 0 1at 681.917 kb on + strand, within MPMX19_04317at 681.917 kb on + strand, within MPMX19_04317at 681.917 kb on + strand, within MPMX19_04317at 681.917 kb on + strand, within MPMX19_04317at 681.917 kb on + strand, within MPMX19_04317at 681.917 kb on + strand, within MPMX19_04317at 681.917 kb on + strand, within MPMX19_04317at 681.917 kb on + strand, within MPMX19_04317at 681.917 kb on + strand, within MPMX19_04317at 681.917 kb on + strand, within MPMX19_04317at 681.917 kb on + strand, within MPMX19_04317at 681.917 kb on + strand, within MPMX19_04317at 681.917 kb on + strand, within MPMX19_04317at 681.917 kb on + strand, within MPMX19_04317at 681.917 kb on + strand, within MPMX19_04317at 681.918 kb on - strand, within MPMX19_04317at 681.918 kb on - strand, within MPMX19_04317at 681.918 kb on - strand, within MPMX19_04317at 681.918 kb on - strand, within MPMX19_04317at 681.918 kb on - strand, within MPMX19_04317at 681.918 kb on - strand, within MPMX19_04317at 681.918 kb on - strand, within MPMX19_04317at 681.918 kb on - strand, within MPMX19_04317at 681.918 kb on - strand, within MPMX19_04317at 681.966 kb on - strand, within MPMX19_04317at 682.016 kb on + strand, within MPMX19_04317at 682.016 kb on + strand, within MPMX19_04317at 682.016 kb on + strand, within MPMX19_04317at 682.016 kb on + strand, within MPMX19_04317at 682.016 kb on + strand, within MPMX19_04317at 682.016 kb on + strand, within MPMX19_04317at 682.016 kb on + strand, within MPMX19_04317at 682.016 kb on + strand, within MPMX19_04317at 682.016 kb on + strand, within MPMX19_04317at 682.016 kb on + strand, within MPMX19_04317at 682.016 kb on + strand, within MPMX19_04317at 682.016 kb on + strand, within MPMX19_04317at 682.016 kb on + strand, within MPMX19_04317at 682.016 kb on + strand, within MPMX19_04317at 682.017 kb on - strand, within MPMX19_04317at 682.017 kb on - strand, within MPMX19_04317at 682.017 kb on - strand, within MPMX19_04317at 682.017 kb on - strand, within MPMX19_04317at 682.017 kb on - strand, within MPMX19_04317at 682.017 kb on - strand, within MPMX19_04317at 682.017 kb on - strand, within MPMX19_04317at 682.017 kb on - strand, within MPMX19_04317at 682.017 kb on - strand, within MPMX19_04317at 682.017 kb on - strand, within MPMX19_04317at 682.124 kb on + strand, within MPMX19_04317at 682.124 kb on + strand, within MPMX19_04317at 682.124 kb on + strand, within MPMX19_04317at 682.124 kb on + strand, within MPMX19_04317at 682.125 kb on - strand, within MPMX19_04317at 682.125 kb on - strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.262 kb on + strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.263 kb on - strand, within MPMX19_04317at 682.328 kb on + strand, within MPMX19_04317at 682.328 kb on + strand, within MPMX19_04317at 682.328 kb on + strand, within MPMX19_04317at 682.328 kb on + strand, within MPMX19_04317at 682.329 kb on - strand, within MPMX19_04317at 682.329 kb on - strand, within MPMX19_04317at 682.329 kb on - strand, within MPMX19_04317at 682.329 kb on - strand, within MPMX19_04317at 682.329 kb on - strand, within MPMX19_04317at 682.329 kb on - strand, within MPMX19_04317at 682.329 kb on - strand, within MPMX19_04317at 682.329 kb on - strand, within MPMX19_04317at 682.334 kb on + strand, within MPMX19_04317at 682.334 kb on + strand, within MPMX19_04317at 682.335 kb on - strand, within MPMX19_04317at 682.474 kb on + strandat 682.474 kb on + strandat 682.475 kb on - strandat 682.475 kb on - strandat 682.517 kb on + strandat 682.517 kb on + strandat 682.517 kb on + strandat 682.517 kb on + strandat 682.517 kb on + strandat 682.517 kb on + strandat 682.518 kb on - strandat 682.518 kb on - strandat 682.518 kb on - strandat 682.518 kb on - strandat 682.581 kb on + strandat 682.646 kb on + strand, within MPMX19_04318at 682.646 kb on + strand, within MPMX19_04318at 682.646 kb on + strand, within MPMX19_04318at 682.646 kb on + strand, within MPMX19_04318at 682.646 kb on + strand, within MPMX19_04318at 682.646 kb on + strand, within MPMX19_04318at 682.646 kb on + strand, within MPMX19_04318at 682.646 kb on + strand, within MPMX19_04318at 682.646 kb on + strand, within MPMX19_04318at 682.646 kb on + strand, within MPMX19_04318at 682.647 kb on - strand, within MPMX19_04318at 682.647 kb on - strand, within MPMX19_04318at 682.647 kb on - strand, within MPMX19_04318at 682.647 kb on - strand, within MPMX19_04318at 682.647 kb on - strand, within MPMX19_04318at 682.647 kb on - strand, within MPMX19_04318at 682.647 kb on - strand, within MPMX19_04318at 682.647 kb on - strand, within MPMX19_04318at 682.757 kb on + strand, within MPMX19_04318at 682.757 kb on + strand, within MPMX19_04318at 682.758 kb on - strand, within MPMX19_04318at 682.758 kb on - strand, within MPMX19_04318at 682.758 kb on - strand, within MPMX19_04318at 682.769 kb on + strand, within MPMX19_04318at 682.769 kb on + strand, within MPMX19_04318at 682.769 kb on + strand, within MPMX19_04318at 682.769 kb on + strand, within MPMX19_04318at 682.770 kb on - strand, within MPMX19_04318at 682.770 kb on - strand, within MPMX19_04318at 682.770 kb on - strand, within MPMX19_04318at 682.770 kb on - strand, within MPMX19_04318at 682.770 kb on - strand, within MPMX19_04318at 682.913 kb on + strandat 682.913 kb on + strandat 682.913 kb on + strandat 682.914 kb on - strandat 682.914 kb on - strandat 682.914 kb on - strandat 682.914 kb on - strandat 682.914 kb on - strandat 682.914 kb on - strandat 682.914 kb on - strandat 682.914 kb on - strandat 682.914 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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681,917 + MPMX19_04317 0.26 +0.1
681,917 + MPMX19_04317 0.26 +0.7
681,917 + MPMX19_04317 0.26 -0.8
681,917 + MPMX19_04317 0.26 -1.1
681,917 + MPMX19_04317 0.26 +0.3
681,917 + MPMX19_04317 0.26 -0.4
681,917 + MPMX19_04317 0.26 -2.5
681,917 + MPMX19_04317 0.26 +0.3
681,917 + MPMX19_04317 0.26 -0.4
681,917 + MPMX19_04317 0.26 -1.7
681,917 + MPMX19_04317 0.26 -0.3
681,917 + MPMX19_04317 0.26 +1.3
681,917 + MPMX19_04317 0.26 -0.8
681,917 + MPMX19_04317 0.26 -0.9
681,917 + MPMX19_04317 0.26 -3.0
681,918 - MPMX19_04317 0.26 -0.7
681,918 - MPMX19_04317 0.26 -0.3
681,918 - MPMX19_04317 0.26 +1.7
681,918 - MPMX19_04317 0.26 -1.3
681,918 - MPMX19_04317 0.26 -1.5
681,918 - MPMX19_04317 0.26 +1.3
681,918 - MPMX19_04317 0.26 -1.1
681,918 - MPMX19_04317 0.26 +0.0
681,918 - MPMX19_04317 0.26 -0.9
681,966 - MPMX19_04317 0.32 -0.1
682,016 + MPMX19_04317 0.37 -0.7
682,016 + MPMX19_04317 0.37 +0.1
682,016 + MPMX19_04317 0.37 -0.4
682,016 + MPMX19_04317 0.37 -1.4
682,016 + MPMX19_04317 0.37 +0.3
682,016 + MPMX19_04317 0.37 -0.4
682,016 + MPMX19_04317 0.37 -0.2
682,016 + MPMX19_04317 0.37 -1.7
682,016 + MPMX19_04317 0.37 +0.3
682,016 + MPMX19_04317 0.37 -0.7
682,016 + MPMX19_04317 0.37 -0.2
682,016 + MPMX19_04317 0.37 +0.7
682,016 + MPMX19_04317 0.37 -0.7
682,016 + MPMX19_04317 0.37 -0.2
682,017 - MPMX19_04317 0.38 -0.3
682,017 - MPMX19_04317 0.38 +0.2
682,017 - MPMX19_04317 0.38 -0.4
682,017 - MPMX19_04317 0.38 +0.1
682,017 - MPMX19_04317 0.38 +0.9
682,017 - MPMX19_04317 0.38 -2.7
682,017 - MPMX19_04317 0.38 +0.7
682,017 - MPMX19_04317 0.38 -0.2
682,017 - MPMX19_04317 0.38 +0.5
682,017 - MPMX19_04317 0.38 +1.3
682,124 + MPMX19_04317 0.50 +0.1
682,124 + MPMX19_04317 0.50 +1.2
682,124 + MPMX19_04317 0.50 -2.5
682,124 + MPMX19_04317 0.50 +0.3
682,125 - MPMX19_04317 0.50 -0.2
682,125 - MPMX19_04317 0.50 -0.0
682,262 + MPMX19_04317 0.67 -0.9
682,262 + MPMX19_04317 0.67 -1.6
682,262 + MPMX19_04317 0.67 +1.7
682,262 + MPMX19_04317 0.67 -0.7
682,262 + MPMX19_04317 0.67 +0.1
682,262 + MPMX19_04317 0.67 -0.7
682,262 + MPMX19_04317 0.67 -1.0
682,262 + MPMX19_04317 0.67 -1.3
682,262 + MPMX19_04317 0.67 -0.8
682,262 + MPMX19_04317 0.67 -0.7
682,262 + MPMX19_04317 0.67 +0.3
682,262 + MPMX19_04317 0.67 +0.1
682,262 + MPMX19_04317 0.67 -1.1
682,262 + MPMX19_04317 0.67 -0.9
682,262 + MPMX19_04317 0.67 -0.8
682,262 + MPMX19_04317 0.67 -1.2
682,262 + MPMX19_04317 0.67 -0.3
682,262 + MPMX19_04317 0.67 +1.0
682,262 + MPMX19_04317 0.67 -0.1
682,262 + MPMX19_04317 0.67 -1.0
682,262 + MPMX19_04317 0.67 -0.1
682,262 + MPMX19_04317 0.67 -0.2
682,262 + MPMX19_04317 0.67 -0.6
682,262 + MPMX19_04317 0.67 -0.3
682,262 + MPMX19_04317 0.67 +0.1
682,262 + MPMX19_04317 0.67 -0.7
682,262 + MPMX19_04317 0.67 -0.3
682,262 + MPMX19_04317 0.67 -1.4
682,263 - MPMX19_04317 0.67 +0.5
682,263 - MPMX19_04317 0.67 +0.1
682,263 - MPMX19_04317 0.67 -0.7
682,263 - MPMX19_04317 0.67 -0.4
682,263 - MPMX19_04317 0.67 -0.6
682,263 - MPMX19_04317 0.67 +0.4
682,263 - MPMX19_04317 0.67 +1.0
682,263 - MPMX19_04317 0.67 +0.3
682,263 - MPMX19_04317 0.67 +0.8
682,263 - MPMX19_04317 0.67 -1.1
682,263 - MPMX19_04317 0.67 -1.1
682,263 - MPMX19_04317 0.67 -0.5
682,263 - MPMX19_04317 0.67 -1.0
682,263 - MPMX19_04317 0.67 -1.3
682,263 - MPMX19_04317 0.67 -0.4
682,263 - MPMX19_04317 0.67 +1.0
682,263 - MPMX19_04317 0.67 -1.5
682,263 - MPMX19_04317 0.67 +0.8
682,263 - MPMX19_04317 0.67 -0.1
682,263 - MPMX19_04317 0.67 -0.1
682,263 - MPMX19_04317 0.67 -0.7
682,263 - MPMX19_04317 0.67 -0.7
682,263 - MPMX19_04317 0.67 -3.3
682,263 - MPMX19_04317 0.67 -0.7
682,263 - MPMX19_04317 0.67 -2.6
682,263 - MPMX19_04317 0.67 -0.6
682,263 - MPMX19_04317 0.67 +0.1
682,263 - MPMX19_04317 0.67 -0.7
682,328 + MPMX19_04317 0.74 +1.2
682,328 + MPMX19_04317 0.74 -1.3
682,328 + MPMX19_04317 0.74 -1.9
682,328 + MPMX19_04317 0.74 -0.6
682,329 - MPMX19_04317 0.75 +0.4
682,329 - MPMX19_04317 0.75 -0.1
682,329 - MPMX19_04317 0.75 -1.9
682,329 - MPMX19_04317 0.75 -1.7
682,329 - MPMX19_04317 0.75 +0.3
682,329 - MPMX19_04317 0.75 -1.5
682,329 - MPMX19_04317 0.75 +1.7
682,329 - MPMX19_04317 0.75 -2.0
682,334 + MPMX19_04317 0.75 -0.5
682,334 + MPMX19_04317 0.75 -1.8
682,335 - MPMX19_04317 0.75 -0.2
682,474 + +0.4
682,474 + +0.4
682,475 - +0.9
682,475 - +0.3
682,517 + -0.4
682,517 + -0.6
682,517 + -1.9
682,517 + +0.2
682,517 + -0.7
682,517 + -1.2
682,518 - -0.9
682,518 - -0.2
682,518 - -0.9
682,518 - -1.3
682,581 + +0.3
682,646 + MPMX19_04318 0.23 -1.3
682,646 + MPMX19_04318 0.23 -0.9
682,646 + MPMX19_04318 0.23 -0.1
682,646 + MPMX19_04318 0.23 +0.5
682,646 + MPMX19_04318 0.23 +0.4
682,646 + MPMX19_04318 0.23 -0.0
682,646 + MPMX19_04318 0.23 -0.3
682,646 + MPMX19_04318 0.23 -0.7
682,646 + MPMX19_04318 0.23 +0.6
682,646 + MPMX19_04318 0.23 +0.5
682,647 - MPMX19_04318 0.23 +0.0
682,647 - MPMX19_04318 0.23 -0.7
682,647 - MPMX19_04318 0.23 -0.1
682,647 - MPMX19_04318 0.23 -0.3
682,647 - MPMX19_04318 0.23 -0.2
682,647 - MPMX19_04318 0.23 -1.7
682,647 - MPMX19_04318 0.23 +1.2
682,647 - MPMX19_04318 0.23 -2.2
682,757 + MPMX19_04318 0.56 -0.3
682,757 + MPMX19_04318 0.56 -1.1
682,758 - MPMX19_04318 0.56 +0.3
682,758 - MPMX19_04318 0.56 +1.0
682,758 - MPMX19_04318 0.56 +0.2
682,769 + MPMX19_04318 0.60 -0.1
682,769 + MPMX19_04318 0.60 -0.3
682,769 + MPMX19_04318 0.60 +1.7
682,769 + MPMX19_04318 0.60 +0.2
682,770 - MPMX19_04318 0.60 -0.2
682,770 - MPMX19_04318 0.60 -0.9
682,770 - MPMX19_04318 0.60 -1.1
682,770 - MPMX19_04318 0.60 +0.7
682,770 - MPMX19_04318 0.60 -0.1
682,913 + -0.4
682,913 + -2.0
682,913 + -0.2
682,914 - +0.7
682,914 - -1.1
682,914 - -0.3
682,914 - -0.2
682,914 - +0.2
682,914 - -1.3
682,914 - -1.4
682,914 - +0.1
682,914 - -0.8

Or see this region's nucleotide sequence