Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04290 and MPMX19_04291 are separated by 200 nucleotides MPMX19_04291 and MPMX19_04292 are separated by 170 nucleotides MPMX19_04292 and MPMX19_04293 are separated by 11 nucleotides
MPMX19_04290: MPMX19_04290 - hypothetical protein, at 649,693 to 650,886
_04290
MPMX19_04291: MPMX19_04291 - Peptidoglycan glycosyltransferase MrdB, at 651,087 to 652,253
_04291
MPMX19_04292: MPMX19_04292 - Beta-glucanase, at 652,424 to 653,227
_04292
MPMX19_04293: MPMX19_04293 - Lipopolysaccharide export system ATP-binding protein LptB, at 653,239 to 653,967
_04293
Position (kb) 651
652
653 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 650.090 kb on + strand, within MPMX19_04290 at 650.091 kb on - strand, within MPMX19_04290 at 650.149 kb on + strand, within MPMX19_04290 at 650.149 kb on + strand, within MPMX19_04290 at 650.149 kb on + strand, within MPMX19_04290 at 650.149 kb on + strand, within MPMX19_04290 at 650.149 kb on + strand, within MPMX19_04290 at 650.149 kb on + strand, within MPMX19_04290 at 650.149 kb on + strand, within MPMX19_04290 at 650.149 kb on + strand, within MPMX19_04290 at 650.149 kb on + strand, within MPMX19_04290 at 650.149 kb on + strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.150 kb on - strand, within MPMX19_04290 at 650.153 kb on + strand, within MPMX19_04290 at 650.153 kb on + strand, within MPMX19_04290 at 650.154 kb on - strand, within MPMX19_04290 at 650.154 kb on - strand, within MPMX19_04290 at 650.154 kb on - strand, within MPMX19_04290 at 650.154 kb on - strand, within MPMX19_04290 at 650.154 kb on - strand, within MPMX19_04290 at 650.154 kb on - strand, within MPMX19_04290 at 650.188 kb on + strand, within MPMX19_04290 at 650.188 kb on + strand, within MPMX19_04290 at 650.188 kb on + strand, within MPMX19_04290 at 650.188 kb on + strand, within MPMX19_04290 at 650.188 kb on + strand, within MPMX19_04290 at 650.188 kb on + strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.189 kb on - strand, within MPMX19_04290 at 650.314 kb on + strand, within MPMX19_04290 at 650.314 kb on + strand, within MPMX19_04290 at 650.314 kb on + strand, within MPMX19_04290 at 650.314 kb on + strand, within MPMX19_04290 at 650.314 kb on + strand, within MPMX19_04290 at 650.314 kb on + strand, within MPMX19_04290 at 650.314 kb on + strand, within MPMX19_04290 at 650.314 kb on + strand, within MPMX19_04290 at 650.314 kb on + strand, within MPMX19_04290 at 650.314 kb on + strand, within MPMX19_04290 at 650.315 kb on - strand, within MPMX19_04290 at 650.315 kb on - strand, within MPMX19_04290 at 650.315 kb on - strand, within MPMX19_04290 at 650.315 kb on - strand, within MPMX19_04290 at 650.315 kb on - strand, within MPMX19_04290 at 650.315 kb on - strand, within MPMX19_04290 at 650.315 kb on - strand, within MPMX19_04290 at 650.315 kb on - strand, within MPMX19_04290 at 650.315 kb on - strand, within MPMX19_04290 at 650.315 kb on - strand, within MPMX19_04290 at 650.315 kb on - strand, within MPMX19_04290 at 650.809 kb on + strand at 650.810 kb on - strand at 650.849 kb on - strand at 650.981 kb on + strand at 651.009 kb on + strand at 651.021 kb on + strand at 652.300 kb on + strand at 652.301 kb on - strand at 652.301 kb on - strand at 652.301 kb on - strand at 652.395 kb on - strand at 652.404 kb on - strand at 652.419 kb on + strand at 652.419 kb on + strand at 652.419 kb on + strand at 652.419 kb on + strand at 652.419 kb on + strand at 652.419 kb on + strand at 652.420 kb on - strand at 652.420 kb on - strand at 652.420 kb on - strand at 652.420 kb on - strand at 652.420 kb on - strand at 652.440 kb on + strand at 652.440 kb on + strand at 652.440 kb on + strand at 652.440 kb on + strand at 652.440 kb on + strand at 652.441 kb on - strand at 652.441 kb on - strand at 652.727 kb on + strand, within MPMX19_04292 at 652.727 kb on + strand, within MPMX19_04292 at 652.727 kb on + strand, within MPMX19_04292 at 652.728 kb on - strand, within MPMX19_04292 at 652.728 kb on - strand, within MPMX19_04292 at 652.728 kb on - strand, within MPMX19_04292 at 652.742 kb on + strand, within MPMX19_04292 at 652.743 kb on - strand, within MPMX19_04292 at 652.743 kb on - strand, within MPMX19_04292 at 652.760 kb on + strand, within MPMX19_04292 at 652.760 kb on + strand, within MPMX19_04292 at 652.761 kb on - strand, within MPMX19_04292 at 652.761 kb on - strand, within MPMX19_04292 at 652.761 kb on - strand, within MPMX19_04292 at 652.761 kb on - strand, within MPMX19_04292 at 652.761 kb on - strand, within MPMX19_04292 at 652.761 kb on - strand, within MPMX19_04292 at 652.761 kb on - strand, within MPMX19_04292 at 652.761 kb on - strand, within MPMX19_04292 at 652.775 kb on + strand, within MPMX19_04292 at 652.775 kb on + strand, within MPMX19_04292 at 652.775 kb on + strand, within MPMX19_04292 at 652.776 kb on - strand, within MPMX19_04292 at 652.776 kb on - strand, within MPMX19_04292 at 652.776 kb on - strand, within MPMX19_04292 at 652.832 kb on + strand, within MPMX19_04292 at 652.832 kb on + strand, within MPMX19_04292 at 652.832 kb on + strand, within MPMX19_04292 at 652.832 kb on + strand, within MPMX19_04292 at 652.832 kb on + strand, within MPMX19_04292 at 652.832 kb on + strand, within MPMX19_04292 at 652.833 kb on - strand, within MPMX19_04292 at 652.833 kb on - strand, within MPMX19_04292 at 652.833 kb on - strand, within MPMX19_04292 at 652.833 kb on - strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.916 kb on + strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.917 kb on - strand, within MPMX19_04292 at 652.991 kb on + strand, within MPMX19_04292 at 652.991 kb on + strand, within MPMX19_04292 at 652.991 kb on + strand, within MPMX19_04292 at 652.991 kb on + strand, within MPMX19_04292 at 652.991 kb on + strand, within MPMX19_04292 at 652.991 kb on + strand, within MPMX19_04292 at 652.992 kb on - strand, within MPMX19_04292 at 652.992 kb on - strand, within MPMX19_04292 at 652.992 kb on - strand, within MPMX19_04292 at 652.992 kb on - strand, within MPMX19_04292 at 652.992 kb on - strand, within MPMX19_04292 at 652.992 kb on - strand, within MPMX19_04292 at 652.992 kb on - strand, within MPMX19_04292 at 652.992 kb on - strand, within MPMX19_04292 at 652.992 kb on - strand, within MPMX19_04292 at 653.153 kb on + strand at 653.153 kb on + strand at 653.153 kb on + strand at 653.153 kb on + strand at 653.154 kb on - strand at 653.154 kb on - strand at 653.154 kb on - strand at 653.195 kb on + strand at 653.195 kb on + strand at 653.195 kb on + strand at 653.195 kb on + strand at 653.196 kb on - strand at 653.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 650,090 + MPMX19_04290 0.33 -0.1 650,091 - MPMX19_04290 0.33 -0.4 650,149 + MPMX19_04290 0.38 -0.7 650,149 + MPMX19_04290 0.38 -0.3 650,149 + MPMX19_04290 0.38 -1.1 650,149 + MPMX19_04290 0.38 -0.5 650,149 + MPMX19_04290 0.38 -0.2 650,149 + MPMX19_04290 0.38 -0.8 650,149 + MPMX19_04290 0.38 +0.5 650,149 + MPMX19_04290 0.38 -0.8 650,149 + MPMX19_04290 0.38 -0.6 650,149 + MPMX19_04290 0.38 -1.8 650,150 - MPMX19_04290 0.38 -0.8 650,150 - MPMX19_04290 0.38 +0.7 650,150 - MPMX19_04290 0.38 -0.2 650,150 - MPMX19_04290 0.38 -0.1 650,150 - MPMX19_04290 0.38 -0.1 650,150 - MPMX19_04290 0.38 -0.3 650,150 - MPMX19_04290 0.38 +1.3 650,150 - MPMX19_04290 0.38 +0.2 650,150 - MPMX19_04290 0.38 -1.9 650,150 - MPMX19_04290 0.38 -0.3 650,150 - MPMX19_04290 0.38 -1.4 650,150 - MPMX19_04290 0.38 +0.7 650,150 - MPMX19_04290 0.38 +0.1 650,150 - MPMX19_04290 0.38 -0.3 650,150 - MPMX19_04290 0.38 -2.1 650,150 - MPMX19_04290 0.38 +0.1 650,153 + MPMX19_04290 0.39 -0.0 650,153 + MPMX19_04290 0.39 -0.7 650,154 - MPMX19_04290 0.39 -0.6 650,154 - MPMX19_04290 0.39 -1.1 650,154 - MPMX19_04290 0.39 -1.1 650,154 - MPMX19_04290 0.39 +0.5 650,154 - MPMX19_04290 0.39 -1.7 650,154 - MPMX19_04290 0.39 +0.9 650,188 + MPMX19_04290 0.41 -0.0 650,188 + MPMX19_04290 0.41 -0.5 650,188 + MPMX19_04290 0.41 -0.6 650,188 + MPMX19_04290 0.41 +0.2 650,188 + MPMX19_04290 0.41 -0.1 650,188 + MPMX19_04290 0.41 -1.7 650,189 - MPMX19_04290 0.42 -1.1 650,189 - MPMX19_04290 0.42 -1.1 650,189 - MPMX19_04290 0.42 -2.9 650,189 - MPMX19_04290 0.42 -1.3 650,189 - MPMX19_04290 0.42 +0.2 650,189 - MPMX19_04290 0.42 -1.3 650,189 - MPMX19_04290 0.42 -1.0 650,189 - MPMX19_04290 0.42 +0.5 650,189 - MPMX19_04290 0.42 -0.8 650,189 - MPMX19_04290 0.42 -1.4 650,189 - MPMX19_04290 0.42 +0.1 650,189 - MPMX19_04290 0.42 +0.7 650,189 - MPMX19_04290 0.42 -0.5 650,189 - MPMX19_04290 0.42 -0.4 650,189 - MPMX19_04290 0.42 +0.8 650,189 - MPMX19_04290 0.42 -2.1 650,189 - MPMX19_04290 0.42 -0.1 650,189 - MPMX19_04290 0.42 +0.2 650,314 + MPMX19_04290 0.52 -0.0 650,314 + MPMX19_04290 0.52 +0.3 650,314 + MPMX19_04290 0.52 -0.1 650,314 + MPMX19_04290 0.52 -0.3 650,314 + MPMX19_04290 0.52 -1.8 650,314 + MPMX19_04290 0.52 -1.8 650,314 + MPMX19_04290 0.52 -1.3 650,314 + MPMX19_04290 0.52 -0.6 650,314 + MPMX19_04290 0.52 -0.2 650,314 + MPMX19_04290 0.52 -1.1 650,315 - MPMX19_04290 0.52 +0.3 650,315 - MPMX19_04290 0.52 +0.1 650,315 - MPMX19_04290 0.52 -0.2 650,315 - MPMX19_04290 0.52 +0.3 650,315 - MPMX19_04290 0.52 -1.2 650,315 - MPMX19_04290 0.52 -1.0 650,315 - MPMX19_04290 0.52 +0.2 650,315 - MPMX19_04290 0.52 -0.3 650,315 - MPMX19_04290 0.52 -0.5 650,315 - MPMX19_04290 0.52 -1.4 650,315 - MPMX19_04290 0.52 -2.1 650,809 + -0.1 650,810 - -0.5 650,849 - +0.5 650,981 + +0.7 651,009 + -0.7 651,021 + -2.4 652,300 + -1.0 652,301 - +0.7 652,301 - -0.3 652,301 - -0.0 652,395 - +1.5 652,404 - -1.3 652,419 + -0.9 652,419 + +1.3 652,419 + +0.9 652,419 + -0.2 652,419 + -0.9 652,419 + -1.2 652,420 - -0.5 652,420 - -0.2 652,420 - -0.9 652,420 - -0.5 652,420 - -0.9 652,440 + +1.2 652,440 + -1.5 652,440 + +0.7 652,440 + -0.0 652,440 + -1.7 652,441 - +0.3 652,441 - -0.5 652,727 + MPMX19_04292 0.38 +0.1 652,727 + MPMX19_04292 0.38 +0.5 652,727 + MPMX19_04292 0.38 +1.3 652,728 - MPMX19_04292 0.38 +0.3 652,728 - MPMX19_04292 0.38 +1.3 652,728 - MPMX19_04292 0.38 +0.9 652,742 + MPMX19_04292 0.40 +0.9 652,743 - MPMX19_04292 0.40 +0.4 652,743 - MPMX19_04292 0.40 +0.2 652,760 + MPMX19_04292 0.42 -0.1 652,760 + MPMX19_04292 0.42 -1.5 652,761 - MPMX19_04292 0.42 -0.5 652,761 - MPMX19_04292 0.42 +1.1 652,761 - MPMX19_04292 0.42 +0.0 652,761 - MPMX19_04292 0.42 -1.2 652,761 - MPMX19_04292 0.42 -0.4 652,761 - MPMX19_04292 0.42 +0.3 652,761 - MPMX19_04292 0.42 -1.7 652,761 - MPMX19_04292 0.42 +0.7 652,775 + MPMX19_04292 0.44 -0.7 652,775 + MPMX19_04292 0.44 -0.6 652,775 + MPMX19_04292 0.44 -0.1 652,776 - MPMX19_04292 0.44 -1.2 652,776 - MPMX19_04292 0.44 +0.3 652,776 - MPMX19_04292 0.44 +2.7 652,832 + MPMX19_04292 0.51 +0.5 652,832 + MPMX19_04292 0.51 +0.7 652,832 + MPMX19_04292 0.51 +0.4 652,832 + MPMX19_04292 0.51 -1.7 652,832 + MPMX19_04292 0.51 -0.2 652,832 + MPMX19_04292 0.51 +2.4 652,833 - MPMX19_04292 0.51 -0.6 652,833 - MPMX19_04292 0.51 -1.1 652,833 - MPMX19_04292 0.51 -0.3 652,833 - MPMX19_04292 0.51 -0.5 652,916 + MPMX19_04292 0.61 -1.9 652,916 + MPMX19_04292 0.61 -0.3 652,916 + MPMX19_04292 0.61 -1.8 652,916 + MPMX19_04292 0.61 -1.3 652,916 + MPMX19_04292 0.61 +1.7 652,916 + MPMX19_04292 0.61 -1.7 652,916 + MPMX19_04292 0.61 -2.0 652,916 + MPMX19_04292 0.61 +0.6 652,916 + MPMX19_04292 0.61 -0.7 652,916 + MPMX19_04292 0.61 -0.9 652,916 + MPMX19_04292 0.61 -0.1 652,916 + MPMX19_04292 0.61 +1.1 652,916 + MPMX19_04292 0.61 +0.6 652,916 + MPMX19_04292 0.61 +0.1 652,916 + MPMX19_04292 0.61 +0.4 652,916 + MPMX19_04292 0.61 +0.1 652,916 + MPMX19_04292 0.61 +0.9 652,916 + MPMX19_04292 0.61 +0.4 652,916 + MPMX19_04292 0.61 -1.6 652,916 + MPMX19_04292 0.61 -1.3 652,916 + MPMX19_04292 0.61 +0.1 652,917 - MPMX19_04292 0.61 +0.9 652,917 - MPMX19_04292 0.61 -1.3 652,917 - MPMX19_04292 0.61 -0.1 652,917 - MPMX19_04292 0.61 -0.3 652,917 - MPMX19_04292 0.61 +0.4 652,917 - MPMX19_04292 0.61 +1.4 652,917 - MPMX19_04292 0.61 -1.9 652,917 - MPMX19_04292 0.61 -1.0 652,917 - MPMX19_04292 0.61 -0.1 652,917 - MPMX19_04292 0.61 -0.3 652,917 - MPMX19_04292 0.61 +0.1 652,917 - MPMX19_04292 0.61 -1.8 652,917 - MPMX19_04292 0.61 -0.5 652,917 - MPMX19_04292 0.61 -1.8 652,917 - MPMX19_04292 0.61 -0.3 652,917 - MPMX19_04292 0.61 -0.3 652,917 - MPMX19_04292 0.61 +0.7 652,991 + MPMX19_04292 0.71 -2.3 652,991 + MPMX19_04292 0.71 +0.1 652,991 + MPMX19_04292 0.71 +0.1 652,991 + MPMX19_04292 0.71 -0.6 652,991 + MPMX19_04292 0.71 -0.7 652,991 + MPMX19_04292 0.71 -1.3 652,992 - MPMX19_04292 0.71 +0.1 652,992 - MPMX19_04292 0.71 -2.5 652,992 - MPMX19_04292 0.71 +0.1 652,992 - MPMX19_04292 0.71 -0.0 652,992 - MPMX19_04292 0.71 -1.2 652,992 - MPMX19_04292 0.71 -1.5 652,992 - MPMX19_04292 0.71 +0.2 652,992 - MPMX19_04292 0.71 -0.5 652,992 - MPMX19_04292 0.71 -0.1 653,153 + +0.9 653,153 + +0.1 653,153 + -0.7 653,153 + +1.9 653,154 - +0.9 653,154 - -0.5 653,154 - -1.2 653,195 + -1.1 653,195 + -0.8 653,195 + -2.0 653,195 + -1.1 653,196 - +0.1 653,196 - +0.1
Or see this region's nucleotide sequence