Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04256 and MPMX19_04257 are separated by 172 nucleotides MPMX19_04257 and MPMX19_04258 are separated by 158 nucleotides
MPMX19_04256: MPMX19_04256 - Photosystem I assembly protein Ycf3, at 613,250 to 617,269
_04256
MPMX19_04257: MPMX19_04257 - D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase, at 617,442 to 618,167
_04257
MPMX19_04258: MPMX19_04258 - hypothetical protein, at 618,326 to 619,435
_04258
Position (kb) 617
618
619 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 616.853 kb on + strand, within MPMX19_04256 at 616.853 kb on + strand, within MPMX19_04256 at 616.853 kb on + strand, within MPMX19_04256 at 616.853 kb on + strand, within MPMX19_04256 at 616.853 kb on + strand, within MPMX19_04256 at 616.853 kb on + strand, within MPMX19_04256 at 616.854 kb on - strand, within MPMX19_04256 at 616.854 kb on - strand, within MPMX19_04256 at 616.854 kb on - strand, within MPMX19_04256 at 616.854 kb on - strand, within MPMX19_04256 at 616.919 kb on + strand at 616.919 kb on + strand at 616.919 kb on + strand at 616.919 kb on + strand at 616.919 kb on + strand at 616.919 kb on + strand at 616.919 kb on + strand at 616.919 kb on + strand at 616.919 kb on + strand at 616.920 kb on - strand at 616.920 kb on - strand at 616.920 kb on - strand at 616.920 kb on - strand at 617.052 kb on + strand at 617.052 kb on + strand at 617.052 kb on + strand at 617.053 kb on - strand at 617.053 kb on - strand at 617.329 kb on - strand at 617.335 kb on + strand at 617.335 kb on + strand at 617.335 kb on + strand at 617.336 kb on - strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.586 kb on + strand, within MPMX19_04257 at 617.586 kb on + strand, within MPMX19_04257 at 617.586 kb on + strand, within MPMX19_04257 at 617.586 kb on + strand, within MPMX19_04257 at 617.586 kb on + strand, within MPMX19_04257 at 617.587 kb on - strand, within MPMX19_04257 at 617.587 kb on - strand, within MPMX19_04257 at 617.587 kb on - strand, within MPMX19_04257 at 617.587 kb on - strand, within MPMX19_04257 at 617.587 kb on - strand, within MPMX19_04257 at 617.598 kb on + strand, within MPMX19_04257 at 617.598 kb on + strand, within MPMX19_04257 at 617.599 kb on - strand, within MPMX19_04257 at 617.599 kb on - strand, within MPMX19_04257 at 617.742 kb on + strand, within MPMX19_04257 at 617.742 kb on + strand, within MPMX19_04257 at 617.742 kb on + strand, within MPMX19_04257 at 617.742 kb on + strand, within MPMX19_04257 at 617.742 kb on + strand, within MPMX19_04257 at 617.742 kb on + strand, within MPMX19_04257 at 617.743 kb on - strand, within MPMX19_04257 at 617.743 kb on - strand, within MPMX19_04257 at 617.743 kb on - strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 618.206 kb on + strand at 618.206 kb on + strand at 618.291 kb on + strand at 618.291 kb on + strand at 618.291 kb on + strand at 618.291 kb on + strand at 618.291 kb on + strand at 618.291 kb on + strand at 618.291 kb on + strand at 618.291 kb on + strand at 618.292 kb on - strand at 618.292 kb on - strand at 618.292 kb on - strand at 618.292 kb on - strand at 618.292 kb on - strand at 618.312 kb on + strand at 618.312 kb on + strand at 618.596 kb on + strand, within MPMX19_04258 at 618.615 kb on - strand, within MPMX19_04258 at 618.734 kb on + strand, within MPMX19_04258 at 618.735 kb on - strand, within MPMX19_04258 at 618.779 kb on + strand, within MPMX19_04258 at 618.780 kb on - strand, within MPMX19_04258
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 616,853 + MPMX19_04256 0.90 +0.5 616,853 + MPMX19_04256 0.90 -0.2 616,853 + MPMX19_04256 0.90 -1.3 616,853 + MPMX19_04256 0.90 -0.6 616,853 + MPMX19_04256 0.90 -0.7 616,853 + MPMX19_04256 0.90 +0.7 616,854 - MPMX19_04256 0.90 +1.2 616,854 - MPMX19_04256 0.90 -2.1 616,854 - MPMX19_04256 0.90 -0.5 616,854 - MPMX19_04256 0.90 -3.0 616,919 + -0.3 616,919 + -0.9 616,919 + -0.1 616,919 + -0.3 616,919 + -0.0 616,919 + -0.7 616,919 + -2.0 616,919 + -2.3 616,919 + -0.5 616,920 - -0.0 616,920 - +0.1 616,920 - -1.2 616,920 - -1.7 617,052 + -0.0 617,052 + +1.1 617,052 + -0.5 617,053 - -0.9 617,053 - +0.8 617,329 - -0.2 617,335 + -1.2 617,335 + -0.3 617,335 + -1.5 617,336 - -0.2 617,386 + -2.0 617,386 + +0.1 617,386 + +0.2 617,386 + +0.2 617,386 + +1.1 617,386 + -0.1 617,386 + +0.8 617,386 + -0.2 617,386 + -0.7 617,386 + -0.5 617,387 - +1.1 617,387 - +0.5 617,387 - +0.7 617,387 - -0.3 617,387 - +0.2 617,387 - -0.2 617,387 - -1.4 617,387 - +1.2 617,387 - +0.5 617,387 - +0.7 617,387 - +0.1 617,387 - -0.9 617,470 + -0.0 617,470 + -0.7 617,470 + +0.1 617,470 + -1.7 617,470 + +0.8 617,470 + -0.2 617,470 + +0.4 617,470 + -2.0 617,470 + -2.0 617,470 + -0.7 617,470 + +0.5 617,470 + -1.9 617,470 + +0.7 617,470 + +1.7 617,470 + -2.1 617,470 + +0.2 617,470 + -2.7 617,470 + -0.4 617,470 + -1.0 617,470 + -0.3 617,470 + +0.7 617,470 + -0.4 617,470 + -1.5 617,471 - +0.2 617,471 - -0.5 617,471 - -0.0 617,471 - +1.0 617,471 - +0.8 617,471 - -1.3 617,471 - -1.5 617,471 - +0.5 617,471 - -0.5 617,471 - -1.2 617,471 - +0.7 617,471 - +1.0 617,471 - +0.6 617,471 - -1.1 617,586 + MPMX19_04257 0.20 -2.7 617,586 + MPMX19_04257 0.20 +1.1 617,586 + MPMX19_04257 0.20 +0.1 617,586 + MPMX19_04257 0.20 +0.2 617,586 + MPMX19_04257 0.20 +0.9 617,587 - MPMX19_04257 0.20 -0.7 617,587 - MPMX19_04257 0.20 -1.6 617,587 - MPMX19_04257 0.20 -0.3 617,587 - MPMX19_04257 0.20 -0.8 617,587 - MPMX19_04257 0.20 -0.8 617,598 + MPMX19_04257 0.21 -0.5 617,598 + MPMX19_04257 0.21 -0.2 617,599 - MPMX19_04257 0.22 -0.2 617,599 - MPMX19_04257 0.22 +1.5 617,742 + MPMX19_04257 0.41 -0.8 617,742 + MPMX19_04257 0.41 +0.4 617,742 + MPMX19_04257 0.41 +1.1 617,742 + MPMX19_04257 0.41 +0.2 617,742 + MPMX19_04257 0.41 -0.0 617,742 + MPMX19_04257 0.41 +1.2 617,743 - MPMX19_04257 0.41 -0.7 617,743 - MPMX19_04257 0.41 +2.0 617,743 - MPMX19_04257 0.41 +0.9 617,979 + MPMX19_04257 0.74 -0.3 617,979 + MPMX19_04257 0.74 -2.4 617,979 + MPMX19_04257 0.74 -0.7 617,979 + MPMX19_04257 0.74 -0.8 617,979 + MPMX19_04257 0.74 -0.0 617,979 + MPMX19_04257 0.74 +1.2 617,979 + MPMX19_04257 0.74 +0.8 617,979 + MPMX19_04257 0.74 +1.3 617,979 + MPMX19_04257 0.74 -0.9 617,979 + MPMX19_04257 0.74 -2.0 617,979 + MPMX19_04257 0.74 +0.8 617,980 - MPMX19_04257 0.74 -1.0 617,980 - MPMX19_04257 0.74 +0.4 617,980 - MPMX19_04257 0.74 -0.3 617,980 - MPMX19_04257 0.74 +0.3 617,980 - MPMX19_04257 0.74 +0.9 617,980 - MPMX19_04257 0.74 +1.5 617,980 - MPMX19_04257 0.74 +0.1 617,980 - MPMX19_04257 0.74 +0.8 617,980 - MPMX19_04257 0.74 +1.2 617,980 - MPMX19_04257 0.74 +0.0 617,980 - MPMX19_04257 0.74 +0.2 617,980 - MPMX19_04257 0.74 +0.3 617,980 - MPMX19_04257 0.74 -0.5 618,206 + -0.3 618,206 + -0.3 618,291 + -0.9 618,291 + -1.3 618,291 + +0.1 618,291 + +0.2 618,291 + +2.0 618,291 + -0.0 618,291 + -0.2 618,291 + -1.5 618,292 - -0.3 618,292 - +0.1 618,292 - +0.2 618,292 - -0.5 618,292 - -2.2 618,312 + +0.1 618,312 + +0.5 618,596 + MPMX19_04258 0.24 -0.2 618,615 - MPMX19_04258 0.26 -1.1 618,734 + MPMX19_04258 0.37 -1.4 618,735 - MPMX19_04258 0.37 -1.5 618,779 + MPMX19_04258 0.41 -1.5 618,780 - MPMX19_04258 0.41 -1.6
Or see this region's nucleotide sequence