Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04241 and MPMX19_04242 are separated by 11 nucleotides MPMX19_04242 and MPMX19_04243 overlap by 4 nucleotides MPMX19_04243 and MPMX19_04244 are separated by 28 nucleotides MPMX19_04244 and MPMX19_04245 are separated by 228 nucleotides
MPMX19_04241: MPMX19_04241 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 589,276 to 589,998
_04241
MPMX19_04242: MPMX19_04242 - hypothetical protein, at 590,010 to 590,441
_04242
MPMX19_04243: MPMX19_04243 - 2,3-dehydroadipyl-CoA hydratase, at 590,438 to 591,217
_04243
MPMX19_04244: MPMX19_04244 - hypothetical protein, at 591,246 to 591,464
_04244
MPMX19_04245: MPMX19_04245 - hypothetical protein, at 591,693 to 592,139
_04245
Position (kb) 590
591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 589.897 kb on + strand, within MPMX19_04241 at 589.897 kb on + strand, within MPMX19_04241 at 589.897 kb on + strand, within MPMX19_04241 at 589.897 kb on + strand, within MPMX19_04241 at 589.897 kb on + strand, within MPMX19_04241 at 589.897 kb on + strand, within MPMX19_04241 at 589.897 kb on + strand, within MPMX19_04241 at 589.897 kb on + strand, within MPMX19_04241 at 589.897 kb on + strand, within MPMX19_04241 at 589.897 kb on + strand, within MPMX19_04241 at 589.897 kb on + strand, within MPMX19_04241 at 589.897 kb on + strand, within MPMX19_04241 at 589.898 kb on - strand, within MPMX19_04241 at 589.898 kb on - strand, within MPMX19_04241 at 589.898 kb on - strand, within MPMX19_04241 at 589.898 kb on - strand, within MPMX19_04241 at 589.898 kb on - strand, within MPMX19_04241 at 589.898 kb on - strand, within MPMX19_04241 at 589.898 kb on - strand, within MPMX19_04241 at 589.898 kb on - strand, within MPMX19_04241 at 589.898 kb on - strand, within MPMX19_04241 at 589.898 kb on - strand, within MPMX19_04241 at 589.972 kb on + strand at 589.972 kb on + strand at 589.972 kb on + strand at 589.972 kb on + strand at 589.972 kb on + strand at 589.972 kb on + strand at 589.973 kb on - strand at 590.064 kb on + strand, within MPMX19_04242 at 590.064 kb on + strand, within MPMX19_04242 at 590.065 kb on - strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.202 kb on + strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.203 kb on - strand, within MPMX19_04242 at 590.204 kb on - strand, within MPMX19_04242 at 590.283 kb on - strand, within MPMX19_04242 at 590.283 kb on - strand, within MPMX19_04242 at 590.400 kb on + strand at 590.401 kb on - strand at 590.437 kb on + strand at 590.437 kb on + strand at 590.437 kb on + strand at 590.437 kb on + strand at 590.437 kb on + strand at 590.437 kb on + strand at 590.437 kb on + strand at 590.437 kb on + strand at 590.437 kb on + strand at 590.437 kb on + strand at 590.437 kb on + strand at 590.437 kb on + strand at 590.437 kb on + strand at 590.437 kb on + strand at 590.437 kb on + strand at 590.438 kb on - strand at 590.438 kb on - strand at 590.438 kb on - strand at 590.438 kb on - strand at 590.438 kb on - strand at 590.438 kb on - strand at 590.438 kb on - strand at 590.840 kb on + strand, within MPMX19_04243 at 590.840 kb on + strand, within MPMX19_04243 at 590.840 kb on + strand, within MPMX19_04243 at 590.840 kb on + strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 591.070 kb on + strand, within MPMX19_04243 at 591.071 kb on - strand, within MPMX19_04243 at 591.206 kb on + strand at 591.206 kb on + strand at 591.206 kb on + strand at 591.206 kb on + strand at 591.207 kb on - strand at 591.207 kb on - strand at 591.207 kb on - strand at 591.207 kb on - strand at 591.207 kb on - strand at 591.241 kb on + strand at 591.241 kb on + strand at 591.241 kb on + strand at 591.242 kb on - strand at 591.242 kb on - strand at 591.267 kb on - strand at 591.267 kb on - strand at 591.361 kb on + strand, within MPMX19_04244 at 591.361 kb on + strand, within MPMX19_04244 at 591.361 kb on + strand, within MPMX19_04244 at 591.362 kb on - strand, within MPMX19_04244 at 591.362 kb on - strand, within MPMX19_04244 at 591.362 kb on - strand, within MPMX19_04244 at 591.362 kb on - strand, within MPMX19_04244 at 591.397 kb on + strand, within MPMX19_04244 at 591.398 kb on - strand, within MPMX19_04244 at 591.398 kb on - strand, within MPMX19_04244 at 591.440 kb on + strand, within MPMX19_04244 at 591.440 kb on + strand, within MPMX19_04244 at 591.440 kb on + strand, within MPMX19_04244 at 591.441 kb on - strand, within MPMX19_04244 at 591.441 kb on - strand, within MPMX19_04244 at 591.441 kb on - strand, within MPMX19_04244 at 591.441 kb on - strand, within MPMX19_04244 at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.491 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.657 kb on - strand at 591.657 kb on - strand at 591.657 kb on - strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.765 kb on + strand, within MPMX19_04245 at 591.765 kb on + strand, within MPMX19_04245 at 591.765 kb on + strand, within MPMX19_04245 at 591.765 kb on + strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.768 kb on - strand, within MPMX19_04245 at 591.768 kb on - strand, within MPMX19_04245 at 591.768 kb on - strand, within MPMX19_04245 at 591.804 kb on - strand, within MPMX19_04245 at 591.804 kb on - strand, within MPMX19_04245 at 591.911 kb on + strand, within MPMX19_04245 at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.160 kb on - strand at 592.160 kb on - strand at 592.160 kb on - strand at 592.160 kb on - strand at 592.160 kb on - strand at 592.160 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 589,897 + MPMX19_04241 0.86 -2.4 589,897 + MPMX19_04241 0.86 -0.1 589,897 + MPMX19_04241 0.86 -1.2 589,897 + MPMX19_04241 0.86 -0.1 589,897 + MPMX19_04241 0.86 -0.9 589,897 + MPMX19_04241 0.86 -0.3 589,897 + MPMX19_04241 0.86 -1.8 589,897 + MPMX19_04241 0.86 -1.7 589,897 + MPMX19_04241 0.86 +0.2 589,897 + MPMX19_04241 0.86 -0.6 589,897 + MPMX19_04241 0.86 -0.3 589,897 + MPMX19_04241 0.86 -1.4 589,898 - MPMX19_04241 0.86 -2.1 589,898 - MPMX19_04241 0.86 +0.8 589,898 - MPMX19_04241 0.86 +0.9 589,898 - MPMX19_04241 0.86 +0.1 589,898 - MPMX19_04241 0.86 +0.6 589,898 - MPMX19_04241 0.86 -0.2 589,898 - MPMX19_04241 0.86 -1.4 589,898 - MPMX19_04241 0.86 -0.9 589,898 - MPMX19_04241 0.86 +0.9 589,898 - MPMX19_04241 0.86 +0.8 589,972 + +0.6 589,972 + -0.2 589,972 + +0.8 589,972 + +0.4 589,972 + -0.1 589,972 + +0.9 589,973 - -1.4 590,064 + MPMX19_04242 0.12 -0.4 590,064 + MPMX19_04242 0.12 +0.2 590,065 - MPMX19_04242 0.13 -0.8 590,202 + MPMX19_04242 0.44 -1.8 590,202 + MPMX19_04242 0.44 -0.2 590,202 + MPMX19_04242 0.44 +0.8 590,202 + MPMX19_04242 0.44 -3.2 590,202 + MPMX19_04242 0.44 -0.8 590,202 + MPMX19_04242 0.44 -0.9 590,202 + MPMX19_04242 0.44 -1.7 590,202 + MPMX19_04242 0.44 +0.5 590,202 + MPMX19_04242 0.44 +0.6 590,202 + MPMX19_04242 0.44 -0.4 590,202 + MPMX19_04242 0.44 +1.0 590,202 + MPMX19_04242 0.44 +0.3 590,202 + MPMX19_04242 0.44 -1.6 590,202 + MPMX19_04242 0.44 -0.1 590,202 + MPMX19_04242 0.44 +0.6 590,202 + MPMX19_04242 0.44 +0.6 590,202 + MPMX19_04242 0.44 +2.0 590,202 + MPMX19_04242 0.44 -0.1 590,202 + MPMX19_04242 0.44 -0.9 590,202 + MPMX19_04242 0.44 +0.1 590,202 + MPMX19_04242 0.44 +0.5 590,202 + MPMX19_04242 0.44 +0.4 590,202 + MPMX19_04242 0.44 -1.2 590,202 + MPMX19_04242 0.44 -0.9 590,202 + MPMX19_04242 0.44 -0.5 590,202 + MPMX19_04242 0.44 -0.0 590,202 + MPMX19_04242 0.44 +1.2 590,203 - MPMX19_04242 0.45 +1.6 590,203 - MPMX19_04242 0.45 +0.2 590,203 - MPMX19_04242 0.45 -0.7 590,203 - MPMX19_04242 0.45 -1.5 590,203 - MPMX19_04242 0.45 +0.1 590,203 - MPMX19_04242 0.45 +0.6 590,203 - MPMX19_04242 0.45 -1.2 590,203 - MPMX19_04242 0.45 +0.2 590,203 - MPMX19_04242 0.45 -0.5 590,203 - MPMX19_04242 0.45 -0.2 590,203 - MPMX19_04242 0.45 -0.4 590,203 - MPMX19_04242 0.45 -2.7 590,203 - MPMX19_04242 0.45 -1.4 590,203 - MPMX19_04242 0.45 -1.8 590,203 - MPMX19_04242 0.45 +0.1 590,203 - MPMX19_04242 0.45 +1.1 590,203 - MPMX19_04242 0.45 +0.5 590,203 - MPMX19_04242 0.45 -0.4 590,203 - MPMX19_04242 0.45 -1.1 590,203 - MPMX19_04242 0.45 -0.7 590,203 - MPMX19_04242 0.45 -0.5 590,204 - MPMX19_04242 0.45 -1.7 590,283 - MPMX19_04242 0.63 +1.1 590,283 - MPMX19_04242 0.63 +0.1 590,400 + -2.4 590,401 - -1.7 590,437 + -0.9 590,437 + +0.6 590,437 + -0.7 590,437 + +0.2 590,437 + +0.8 590,437 + +0.9 590,437 + -0.4 590,437 + -0.7 590,437 + -1.3 590,437 + -0.1 590,437 + -0.7 590,437 + +0.4 590,437 + +0.1 590,437 + -0.5 590,437 + -1.3 590,438 - +0.9 590,438 - -0.1 590,438 - -1.4 590,438 - +1.2 590,438 - -0.4 590,438 - +0.2 590,438 - +0.2 590,840 + MPMX19_04243 0.52 +0.2 590,840 + MPMX19_04243 0.52 +0.3 590,840 + MPMX19_04243 0.52 +1.1 590,840 + MPMX19_04243 0.52 +1.2 590,841 - MPMX19_04243 0.52 -0.7 590,841 - MPMX19_04243 0.52 +1.3 590,841 - MPMX19_04243 0.52 +0.6 590,841 - MPMX19_04243 0.52 +0.6 590,841 - MPMX19_04243 0.52 -1.1 590,841 - MPMX19_04243 0.52 -2.7 590,841 - MPMX19_04243 0.52 -0.7 590,841 - MPMX19_04243 0.52 +0.5 590,841 - MPMX19_04243 0.52 -0.6 590,841 - MPMX19_04243 0.52 -0.1 590,841 - MPMX19_04243 0.52 +0.4 590,841 - MPMX19_04243 0.52 +0.8 591,070 + MPMX19_04243 0.81 +0.5 591,071 - MPMX19_04243 0.81 -0.8 591,206 + -0.6 591,206 + +0.5 591,206 + -0.1 591,206 + -0.2 591,207 - +0.6 591,207 - -0.0 591,207 - -0.5 591,207 - -2.2 591,207 - -0.8 591,241 + -1.3 591,241 + +0.0 591,241 + -0.6 591,242 - +1.6 591,242 - -0.1 591,267 - +0.8 591,267 - -0.7 591,361 + MPMX19_04244 0.53 -0.0 591,361 + MPMX19_04244 0.53 -0.1 591,361 + MPMX19_04244 0.53 -1.4 591,362 - MPMX19_04244 0.53 +1.1 591,362 - MPMX19_04244 0.53 +0.6 591,362 - MPMX19_04244 0.53 -0.5 591,362 - MPMX19_04244 0.53 +0.1 591,397 + MPMX19_04244 0.69 +0.3 591,398 - MPMX19_04244 0.69 -0.7 591,398 - MPMX19_04244 0.69 -0.6 591,440 + MPMX19_04244 0.89 +0.3 591,440 + MPMX19_04244 0.89 +1.1 591,440 + MPMX19_04244 0.89 -1.4 591,441 - MPMX19_04244 0.89 +1.1 591,441 - MPMX19_04244 0.89 -0.3 591,441 - MPMX19_04244 0.89 -1.4 591,441 - MPMX19_04244 0.89 -2.0 591,471 + +1.4 591,471 + -1.7 591,471 + +0.2 591,471 + -0.5 591,471 + +0.1 591,471 + +0.6 591,471 + +1.1 591,471 + +0.3 591,471 + -1.1 591,472 - -1.2 591,472 - -0.1 591,472 - +1.1 591,472 - -0.2 591,472 - -0.9 591,472 - -0.6 591,472 - -0.4 591,472 - -0.8 591,491 + +0.4 591,511 + -1.8 591,511 + +1.1 591,511 + +0.6 591,511 + -0.7 591,511 + +0.4 591,511 + -0.2 591,511 + -1.5 591,511 + +0.3 591,512 - -0.7 591,512 - -0.8 591,512 - -2.4 591,512 - -1.6 591,512 - -0.4 591,512 - -0.4 591,656 + -1.5 591,656 + -0.4 591,656 + +0.1 591,656 + +1.1 591,656 + +0.8 591,656 + -1.5 591,657 - -1.2 591,657 - -1.2 591,657 - -1.5 591,658 + -1.0 591,658 + -1.5 591,658 + +1.2 591,658 + +0.2 591,658 + -0.7 591,658 + +0.1 591,658 + -0.8 591,658 + +0.6 591,658 + -0.4 591,658 + +0.6 591,658 + -0.6 591,658 + +0.4 591,659 - +2.4 591,659 - -1.5 591,659 - +0.6 591,659 - -0.4 591,659 - -1.2 591,659 - +0.3 591,659 - -1.2 591,765 + MPMX19_04245 0.16 +0.6 591,765 + MPMX19_04245 0.16 +0.1 591,765 + MPMX19_04245 0.16 -0.7 591,765 + MPMX19_04245 0.16 -0.9 591,766 - MPMX19_04245 0.16 +0.2 591,766 - MPMX19_04245 0.16 -0.0 591,766 - MPMX19_04245 0.16 -0.8 591,766 - MPMX19_04245 0.16 -2.9 591,766 - MPMX19_04245 0.16 -1.0 591,766 - MPMX19_04245 0.16 -0.7 591,766 - MPMX19_04245 0.16 -0.2 591,766 - MPMX19_04245 0.16 -0.5 591,766 - MPMX19_04245 0.16 -0.4 591,767 + MPMX19_04245 0.17 -1.7 591,767 + MPMX19_04245 0.17 -0.2 591,767 + MPMX19_04245 0.17 -0.4 591,767 + MPMX19_04245 0.17 -0.3 591,767 + MPMX19_04245 0.17 -0.2 591,767 + MPMX19_04245 0.17 -1.2 591,767 + MPMX19_04245 0.17 +1.6 591,767 + MPMX19_04245 0.17 +1.4 591,768 - MPMX19_04245 0.17 -1.3 591,768 - MPMX19_04245 0.17 -2.9 591,768 - MPMX19_04245 0.17 +0.1 591,804 - MPMX19_04245 0.25 +0.1 591,804 - MPMX19_04245 0.25 -0.4 591,911 + MPMX19_04245 0.49 +0.8 592,159 + -0.1 592,159 + -1.3 592,159 + -1.2 592,159 + +1.1 592,159 + -0.1 592,159 + -1.4 592,159 + -0.0 592,160 - -0.6 592,160 - +0.8 592,160 - -0.4 592,160 - +0.8 592,160 - +0.6 592,160 - +0.4
Or see this region's nucleotide sequence