Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04155 and MPMX19_04156 overlap by 4 nucleotides MPMX19_04156 and MPMX19_04157 overlap by 4 nucleotides MPMX19_04157 and MPMX19_04158 overlap by 4 nucleotides
MPMX19_04155: MPMX19_04155 - hypothetical protein, at 468,735 to 471,026
_04155
MPMX19_04156: MPMX19_04156 - hypothetical protein, at 471,023 to 471,850
_04156
MPMX19_04157: MPMX19_04157 - D-inositol-3-phosphate glycosyltransferase, at 471,847 to 473,235
_04157
MPMX19_04158: MPMX19_04158 - hypothetical protein, at 473,232 to 475,439
_04158
Position (kb) 471
472
473
474 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 470.868 kb on + strand at 470.868 kb on + strand at 470.868 kb on + strand at 470.868 kb on + strand at 470.868 kb on + strand at 470.868 kb on + strand at 470.868 kb on + strand at 470.869 kb on - strand at 470.869 kb on - strand at 470.869 kb on - strand at 470.869 kb on - strand at 470.869 kb on - strand at 470.869 kb on - strand at 470.869 kb on - strand at 470.869 kb on - strand at 470.892 kb on + strand at 470.892 kb on + strand at 470.892 kb on + strand at 470.892 kb on + strand at 470.893 kb on - strand at 470.893 kb on - strand at 470.893 kb on - strand at 471.287 kb on + strand, within MPMX19_04156 at 471.287 kb on + strand, within MPMX19_04156 at 471.288 kb on - strand, within MPMX19_04156 at 471.288 kb on - strand, within MPMX19_04156 at 471.288 kb on - strand, within MPMX19_04156 at 471.288 kb on - strand, within MPMX19_04156 at 471.288 kb on - strand, within MPMX19_04156 at 471.288 kb on - strand, within MPMX19_04156 at 471.288 kb on - strand, within MPMX19_04156 at 471.288 kb on - strand, within MPMX19_04156 at 471.288 kb on - strand, within MPMX19_04156 at 471.288 kb on - strand, within MPMX19_04156 at 471.302 kb on + strand, within MPMX19_04156 at 471.302 kb on + strand, within MPMX19_04156 at 471.302 kb on + strand, within MPMX19_04156 at 471.302 kb on + strand, within MPMX19_04156 at 471.302 kb on + strand, within MPMX19_04156 at 471.302 kb on + strand, within MPMX19_04156 at 471.302 kb on + strand, within MPMX19_04156 at 471.302 kb on + strand, within MPMX19_04156 at 471.303 kb on - strand, within MPMX19_04156 at 471.303 kb on - strand, within MPMX19_04156 at 471.303 kb on - strand, within MPMX19_04156 at 471.303 kb on - strand, within MPMX19_04156 at 471.303 kb on - strand, within MPMX19_04156 at 471.303 kb on - strand, within MPMX19_04156 at 471.410 kb on + strand, within MPMX19_04156 at 471.410 kb on + strand, within MPMX19_04156 at 471.410 kb on + strand, within MPMX19_04156 at 471.410 kb on + strand, within MPMX19_04156 at 471.410 kb on + strand, within MPMX19_04156 at 471.410 kb on + strand, within MPMX19_04156 at 471.410 kb on + strand, within MPMX19_04156 at 471.410 kb on + strand, within MPMX19_04156 at 471.410 kb on + strand, within MPMX19_04156 at 471.411 kb on - strand, within MPMX19_04156 at 471.411 kb on - strand, within MPMX19_04156 at 471.411 kb on - strand, within MPMX19_04156 at 471.411 kb on - strand, within MPMX19_04156 at 471.470 kb on + strand, within MPMX19_04156 at 471.470 kb on + strand, within MPMX19_04156 at 471.470 kb on + strand, within MPMX19_04156 at 471.470 kb on + strand, within MPMX19_04156 at 471.470 kb on + strand, within MPMX19_04156 at 471.470 kb on + strand, within MPMX19_04156 at 471.470 kb on + strand, within MPMX19_04156 at 471.470 kb on + strand, within MPMX19_04156 at 471.470 kb on + strand, within MPMX19_04156 at 471.471 kb on - strand, within MPMX19_04156 at 471.471 kb on - strand, within MPMX19_04156 at 471.471 kb on - strand, within MPMX19_04156 at 471.471 kb on - strand, within MPMX19_04156 at 471.471 kb on - strand, within MPMX19_04156 at 471.471 kb on - strand, within MPMX19_04156 at 471.530 kb on + strand, within MPMX19_04156 at 471.530 kb on + strand, within MPMX19_04156 at 471.530 kb on + strand, within MPMX19_04156 at 471.530 kb on + strand, within MPMX19_04156 at 471.530 kb on + strand, within MPMX19_04156 at 471.530 kb on + strand, within MPMX19_04156 at 471.531 kb on - strand, within MPMX19_04156 at 471.531 kb on - strand, within MPMX19_04156 at 471.708 kb on - strand, within MPMX19_04156 at 472.271 kb on + strand, within MPMX19_04157 at 472.272 kb on - strand, within MPMX19_04157 at 472.321 kb on + strand, within MPMX19_04157 at 472.321 kb on + strand, within MPMX19_04157 at 472.322 kb on - strand, within MPMX19_04157 at 472.322 kb on - strand, within MPMX19_04157 at 472.322 kb on - strand, within MPMX19_04157 at 472.322 kb on - strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.339 kb on + strand, within MPMX19_04157 at 472.552 kb on + strand, within MPMX19_04157 at 472.552 kb on + strand, within MPMX19_04157 at 472.553 kb on - strand, within MPMX19_04157 at 472.553 kb on - strand, within MPMX19_04157 at 472.553 kb on - strand, within MPMX19_04157 at 472.553 kb on - strand, within MPMX19_04157 at 472.553 kb on - strand, within MPMX19_04157 at 472.553 kb on - strand, within MPMX19_04157 at 472.669 kb on + strand, within MPMX19_04157 at 472.669 kb on + strand, within MPMX19_04157 at 472.669 kb on + strand, within MPMX19_04157 at 472.670 kb on - strand, within MPMX19_04157 at 472.780 kb on + strand, within MPMX19_04157 at 472.781 kb on - strand, within MPMX19_04157 at 472.781 kb on - strand, within MPMX19_04157 at 472.781 kb on - strand, within MPMX19_04157 at 472.859 kb on - strand, within MPMX19_04157 at 473.177 kb on - strand at 473.211 kb on + strand at 473.211 kb on + strand at 473.211 kb on + strand at 473.212 kb on - strand at 473.212 kb on - strand at 473.212 kb on - strand at 473.212 kb on - strand at 473.212 kb on - strand at 473.212 kb on - strand at 473.212 kb on - strand at 474.099 kb on + strand, within MPMX19_04158 at 474.099 kb on + strand, within MPMX19_04158 at 474.099 kb on + strand, within MPMX19_04158 at 474.100 kb on - strand, within MPMX19_04158
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 470,868 + -0.3 470,868 + +1.0 470,868 + -0.8 470,868 + +1.4 470,868 + -1.1 470,868 + -0.6 470,868 + +0.7 470,869 - +0.8 470,869 - -0.7 470,869 - +0.1 470,869 - +0.9 470,869 - +0.3 470,869 - +0.0 470,869 - -0.2 470,869 - +0.9 470,892 + +1.6 470,892 + -1.7 470,892 + -0.2 470,892 + -0.2 470,893 - -0.1 470,893 - -0.1 470,893 - +0.9 471,287 + MPMX19_04156 0.32 +0.0 471,287 + MPMX19_04156 0.32 -0.4 471,288 - MPMX19_04156 0.32 +0.0 471,288 - MPMX19_04156 0.32 -0.7 471,288 - MPMX19_04156 0.32 -1.1 471,288 - MPMX19_04156 0.32 -1.4 471,288 - MPMX19_04156 0.32 -1.4 471,288 - MPMX19_04156 0.32 -1.4 471,288 - MPMX19_04156 0.32 +0.4 471,288 - MPMX19_04156 0.32 +0.6 471,288 - MPMX19_04156 0.32 -1.1 471,288 - MPMX19_04156 0.32 +0.2 471,302 + MPMX19_04156 0.34 -2.1 471,302 + MPMX19_04156 0.34 +0.2 471,302 + MPMX19_04156 0.34 +0.2 471,302 + MPMX19_04156 0.34 +0.5 471,302 + MPMX19_04156 0.34 +1.2 471,302 + MPMX19_04156 0.34 -0.4 471,302 + MPMX19_04156 0.34 -0.1 471,302 + MPMX19_04156 0.34 -0.7 471,303 - MPMX19_04156 0.34 -0.2 471,303 - MPMX19_04156 0.34 -0.7 471,303 - MPMX19_04156 0.34 -0.6 471,303 - MPMX19_04156 0.34 -1.4 471,303 - MPMX19_04156 0.34 -0.8 471,303 - MPMX19_04156 0.34 +0.1 471,410 + MPMX19_04156 0.47 -0.0 471,410 + MPMX19_04156 0.47 +0.5 471,410 + MPMX19_04156 0.47 -0.1 471,410 + MPMX19_04156 0.47 -0.2 471,410 + MPMX19_04156 0.47 -1.2 471,410 + MPMX19_04156 0.47 -2.4 471,410 + MPMX19_04156 0.47 -0.6 471,410 + MPMX19_04156 0.47 -0.1 471,410 + MPMX19_04156 0.47 -0.5 471,411 - MPMX19_04156 0.47 -0.5 471,411 - MPMX19_04156 0.47 +0.2 471,411 - MPMX19_04156 0.47 +0.6 471,411 - MPMX19_04156 0.47 +0.4 471,470 + MPMX19_04156 0.54 +0.3 471,470 + MPMX19_04156 0.54 -1.0 471,470 + MPMX19_04156 0.54 -0.0 471,470 + MPMX19_04156 0.54 -1.7 471,470 + MPMX19_04156 0.54 +0.2 471,470 + MPMX19_04156 0.54 -1.8 471,470 + MPMX19_04156 0.54 +0.1 471,470 + MPMX19_04156 0.54 +0.4 471,470 + MPMX19_04156 0.54 -0.8 471,471 - MPMX19_04156 0.54 +0.4 471,471 - MPMX19_04156 0.54 -0.5 471,471 - MPMX19_04156 0.54 +0.3 471,471 - MPMX19_04156 0.54 +0.0 471,471 - MPMX19_04156 0.54 +0.2 471,471 - MPMX19_04156 0.54 +0.4 471,530 + MPMX19_04156 0.61 -0.7 471,530 + MPMX19_04156 0.61 -1.4 471,530 + MPMX19_04156 0.61 -1.0 471,530 + MPMX19_04156 0.61 -0.4 471,530 + MPMX19_04156 0.61 -2.7 471,530 + MPMX19_04156 0.61 +0.7 471,531 - MPMX19_04156 0.61 +0.4 471,531 - MPMX19_04156 0.61 +0.6 471,708 - MPMX19_04156 0.83 -1.0 472,271 + MPMX19_04157 0.31 -1.5 472,272 - MPMX19_04157 0.31 -2.8 472,321 + MPMX19_04157 0.34 -1.4 472,321 + MPMX19_04157 0.34 -1.4 472,322 - MPMX19_04157 0.34 -1.7 472,322 - MPMX19_04157 0.34 -0.6 472,322 - MPMX19_04157 0.34 -0.1 472,322 - MPMX19_04157 0.34 -0.1 472,336 + MPMX19_04157 0.35 +0.5 472,336 + MPMX19_04157 0.35 -0.2 472,336 + MPMX19_04157 0.35 -0.0 472,336 + MPMX19_04157 0.35 -1.0 472,336 + MPMX19_04157 0.35 +0.8 472,336 + MPMX19_04157 0.35 -0.2 472,336 + MPMX19_04157 0.35 -1.2 472,336 + MPMX19_04157 0.35 -0.7 472,336 + MPMX19_04157 0.35 -0.4 472,337 - MPMX19_04157 0.35 -0.8 472,337 - MPMX19_04157 0.35 -1.7 472,337 - MPMX19_04157 0.35 -1.5 472,337 - MPMX19_04157 0.35 -2.4 472,337 - MPMX19_04157 0.35 -0.1 472,337 - MPMX19_04157 0.35 -2.0 472,337 - MPMX19_04157 0.35 +0.3 472,337 - MPMX19_04157 0.35 +0.9 472,337 - MPMX19_04157 0.35 -0.1 472,337 - MPMX19_04157 0.35 -2.3 472,337 - MPMX19_04157 0.35 -0.4 472,337 - MPMX19_04157 0.35 +0.1 472,337 - MPMX19_04157 0.35 -0.2 472,337 - MPMX19_04157 0.35 -0.3 472,337 - MPMX19_04157 0.35 +0.2 472,339 + MPMX19_04157 0.35 -1.2 472,552 + MPMX19_04157 0.51 -0.4 472,552 + MPMX19_04157 0.51 -1.1 472,553 - MPMX19_04157 0.51 -1.0 472,553 - MPMX19_04157 0.51 -1.4 472,553 - MPMX19_04157 0.51 +0.0 472,553 - MPMX19_04157 0.51 -0.2 472,553 - MPMX19_04157 0.51 -0.1 472,553 - MPMX19_04157 0.51 +0.0 472,669 + MPMX19_04157 0.59 -2.0 472,669 + MPMX19_04157 0.59 +1.2 472,669 + MPMX19_04157 0.59 -2.4 472,670 - MPMX19_04157 0.59 +0.0 472,780 + MPMX19_04157 0.67 -0.7 472,781 - MPMX19_04157 0.67 +1.2 472,781 - MPMX19_04157 0.67 +0.0 472,781 - MPMX19_04157 0.67 -0.7 472,859 - MPMX19_04157 0.73 -0.1 473,177 - -0.8 473,211 + -0.5 473,211 + +1.5 473,211 + +0.8 473,212 - -0.4 473,212 - +0.6 473,212 - -0.4 473,212 - +0.8 473,212 - +0.5 473,212 - +1.8 473,212 - -3.2 474,099 + MPMX19_04158 0.39 +0.0 474,099 + MPMX19_04158 0.39 +1.6 474,099 + MPMX19_04158 0.39 -0.7 474,100 - MPMX19_04158 0.39 +0.8
Or see this region's nucleotide sequence