Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03912 and MPMX19_03913 overlap by 4 nucleotides MPMX19_03913 and MPMX19_03914 are separated by 39 nucleotides MPMX19_03914 and MPMX19_03915 are separated by 69 nucleotides
MPMX19_03912: MPMX19_03912 - 6-deoxy-6-sulfogluconolactonase, at 190,342 to 191,256
_03912
MPMX19_03913: MPMX19_03913 - hypothetical protein, at 191,253 to 192,770
_03913
MPMX19_03914: MPMX19_03914 - hypothetical protein, at 192,810 to 193,316
_03914
MPMX19_03915: MPMX19_03915 - hypothetical protein, at 193,386 to 194,351
_03915
Position (kb) 191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 190.281 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.282 kb on - strand at 190.282 kb on - strand at 190.282 kb on - strand at 190.282 kb on - strand at 190.282 kb on - strand at 190.282 kb on - strand at 190.282 kb on - strand at 190.589 kb on + strand, within MPMX19_03912 at 190.589 kb on + strand, within MPMX19_03912 at 190.590 kb on - strand, within MPMX19_03912 at 190.590 kb on - strand, within MPMX19_03912 at 190.590 kb on - strand, within MPMX19_03912 at 190.590 kb on - strand, within MPMX19_03912 at 190.590 kb on - strand, within MPMX19_03912 at 190.691 kb on + strand, within MPMX19_03912 at 190.691 kb on + strand, within MPMX19_03912 at 190.692 kb on - strand, within MPMX19_03912 at 190.740 kb on - strand, within MPMX19_03912 at 190.829 kb on + strand, within MPMX19_03912 at 190.829 kb on + strand, within MPMX19_03912 at 190.829 kb on + strand, within MPMX19_03912 at 190.829 kb on + strand, within MPMX19_03912 at 190.830 kb on - strand, within MPMX19_03912 at 190.830 kb on - strand, within MPMX19_03912 at 190.830 kb on - strand, within MPMX19_03912 at 190.836 kb on - strand, within MPMX19_03912 at 191.283 kb on + strand at 191.377 kb on + strand at 191.377 kb on + strand at 191.377 kb on + strand at 191.377 kb on + strand at 191.377 kb on + strand at 191.378 kb on - strand at 191.378 kb on - strand at 191.389 kb on + strand at 191.389 kb on + strand at 191.389 kb on + strand at 191.389 kb on + strand at 191.389 kb on + strand at 191.390 kb on - strand at 191.390 kb on - strand at 191.390 kb on - strand at 191.390 kb on - strand at 191.390 kb on - strand at 191.390 kb on - strand at 191.390 kb on - strand at 191.390 kb on - strand at 191.390 kb on - strand at 191.500 kb on + strand, within MPMX19_03913 at 191.500 kb on + strand, within MPMX19_03913 at 191.500 kb on + strand, within MPMX19_03913 at 191.500 kb on + strand, within MPMX19_03913 at 191.501 kb on - strand, within MPMX19_03913 at 191.501 kb on - strand, within MPMX19_03913 at 191.560 kb on + strand, within MPMX19_03913 at 191.560 kb on + strand, within MPMX19_03913 at 191.560 kb on + strand, within MPMX19_03913 at 191.560 kb on + strand, within MPMX19_03913 at 191.561 kb on - strand, within MPMX19_03913 at 191.561 kb on - strand, within MPMX19_03913 at 191.561 kb on - strand, within MPMX19_03913 at 191.561 kb on - strand, within MPMX19_03913 at 191.561 kb on - strand, within MPMX19_03913 at 191.561 kb on - strand, within MPMX19_03913 at 191.561 kb on - strand, within MPMX19_03913 at 191.561 kb on - strand, within MPMX19_03913 at 191.674 kb on + strand, within MPMX19_03913 at 191.674 kb on + strand, within MPMX19_03913 at 191.674 kb on + strand, within MPMX19_03913 at 191.674 kb on + strand, within MPMX19_03913 at 191.674 kb on + strand, within MPMX19_03913 at 191.674 kb on + strand, within MPMX19_03913 at 191.674 kb on + strand, within MPMX19_03913 at 191.674 kb on + strand, within MPMX19_03913 at 191.675 kb on - strand, within MPMX19_03913 at 191.675 kb on - strand, within MPMX19_03913 at 191.675 kb on - strand, within MPMX19_03913 at 191.675 kb on - strand, within MPMX19_03913 at 191.675 kb on - strand, within MPMX19_03913 at 191.675 kb on - strand, within MPMX19_03913 at 191.675 kb on - strand, within MPMX19_03913 at 191.675 kb on - strand, within MPMX19_03913 at 191.896 kb on + strand, within MPMX19_03913 at 191.896 kb on + strand, within MPMX19_03913 at 191.896 kb on + strand, within MPMX19_03913 at 191.897 kb on - strand, within MPMX19_03913 at 191.935 kb on + strand, within MPMX19_03913 at 191.935 kb on + strand, within MPMX19_03913 at 191.936 kb on - strand, within MPMX19_03913 at 191.936 kb on - strand, within MPMX19_03913 at 191.936 kb on - strand, within MPMX19_03913 at 191.944 kb on + strand, within MPMX19_03913 at 191.944 kb on + strand, within MPMX19_03913 at 191.945 kb on - strand, within MPMX19_03913 at 191.945 kb on - strand, within MPMX19_03913 at 191.945 kb on - strand, within MPMX19_03913 at 192.034 kb on + strand, within MPMX19_03913 at 192.034 kb on + strand, within MPMX19_03913 at 192.034 kb on + strand, within MPMX19_03913 at 192.034 kb on + strand, within MPMX19_03913 at 192.034 kb on + strand, within MPMX19_03913 at 192.034 kb on + strand, within MPMX19_03913 at 192.034 kb on + strand, within MPMX19_03913 at 192.034 kb on + strand, within MPMX19_03913 at 192.034 kb on + strand, within MPMX19_03913 at 192.035 kb on - strand, within MPMX19_03913 at 192.035 kb on - strand, within MPMX19_03913 at 192.035 kb on - strand, within MPMX19_03913 at 192.035 kb on - strand, within MPMX19_03913 at 192.035 kb on - strand, within MPMX19_03913 at 192.035 kb on - strand, within MPMX19_03913 at 192.035 kb on - strand, within MPMX19_03913 at 192.035 kb on - strand, within MPMX19_03913 at 192.035 kb on - strand, within MPMX19_03913 at 192.035 kb on - strand, within MPMX19_03913 at 192.035 kb on - strand, within MPMX19_03913 at 192.035 kb on - strand, within MPMX19_03913 at 192.035 kb on - strand, within MPMX19_03913 at 192.178 kb on + strand, within MPMX19_03913 at 192.178 kb on + strand, within MPMX19_03913 at 192.550 kb on + strand, within MPMX19_03913 at 192.550 kb on + strand, within MPMX19_03913 at 192.550 kb on + strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.868 kb on + strand, within MPMX19_03914 at 192.868 kb on + strand, within MPMX19_03914 at 192.868 kb on + strand, within MPMX19_03914 at 192.868 kb on + strand, within MPMX19_03914 at 192.868 kb on + strand, within MPMX19_03914 at 192.868 kb on + strand, within MPMX19_03914 at 192.869 kb on - strand, within MPMX19_03914 at 192.869 kb on - strand, within MPMX19_03914 at 192.869 kb on - strand, within MPMX19_03914 at 192.869 kb on - strand, within MPMX19_03914 at 192.869 kb on - strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.994 kb on + strand, within MPMX19_03914 at 192.994 kb on + strand, within MPMX19_03914 at 192.994 kb on + strand, within MPMX19_03914 at 192.994 kb on + strand, within MPMX19_03914 at 192.994 kb on + strand, within MPMX19_03914 at 192.994 kb on + strand, within MPMX19_03914 at 192.995 kb on - strand, within MPMX19_03914 at 192.995 kb on - strand, within MPMX19_03914 at 192.995 kb on - strand, within MPMX19_03914 at 192.995 kb on - strand, within MPMX19_03914 at 192.995 kb on - strand, within MPMX19_03914 at 193.040 kb on - strand, within MPMX19_03914 at 193.040 kb on - strand, within MPMX19_03914 at 193.040 kb on - strand, within MPMX19_03914 at 193.387 kb on + strand at 193.387 kb on + strand at 193.387 kb on + strand at 193.387 kb on + strand at 193.387 kb on + strand at 193.387 kb on + strand at 193.387 kb on + strand at 193.388 kb on - strand at 193.388 kb on - strand at 193.388 kb on - strand at 193.388 kb on - strand at 193.474 kb on + strand at 193.474 kb on + strand at 193.475 kb on - strand at 193.475 kb on - strand at 193.475 kb on - strand at 193.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 190,281 + +0.1 190,281 + -0.5 190,281 + -0.8 190,281 + +0.2 190,281 + +0.5 190,281 + +0.2 190,281 + -0.5 190,281 + +0.1 190,281 + -0.9 190,282 - -0.3 190,282 - +0.2 190,282 - -1.8 190,282 - +0.1 190,282 - -0.3 190,282 - -1.4 190,282 - -1.6 190,589 + MPMX19_03912 0.27 -1.1 190,589 + MPMX19_03912 0.27 -0.2 190,590 - MPMX19_03912 0.27 +0.9 190,590 - MPMX19_03912 0.27 -1.6 190,590 - MPMX19_03912 0.27 -0.5 190,590 - MPMX19_03912 0.27 -1.0 190,590 - MPMX19_03912 0.27 -0.9 190,691 + MPMX19_03912 0.38 -1.4 190,691 + MPMX19_03912 0.38 -1.1 190,692 - MPMX19_03912 0.38 -0.1 190,740 - MPMX19_03912 0.43 -0.1 190,829 + MPMX19_03912 0.53 -0.3 190,829 + MPMX19_03912 0.53 -0.3 190,829 + MPMX19_03912 0.53 -1.7 190,829 + MPMX19_03912 0.53 +0.6 190,830 - MPMX19_03912 0.53 -1.1 190,830 - MPMX19_03912 0.53 -0.4 190,830 - MPMX19_03912 0.53 +0.4 190,836 - MPMX19_03912 0.54 -1.0 191,283 + -0.2 191,377 + +0.7 191,377 + +0.5 191,377 + -1.0 191,377 + +0.5 191,377 + +0.2 191,378 - +2.2 191,378 - -0.9 191,389 + -0.3 191,389 + -1.3 191,389 + -1.1 191,389 + -0.2 191,389 + +0.3 191,390 - +0.8 191,390 - -0.3 191,390 - +0.3 191,390 - +0.5 191,390 - +0.5 191,390 - +0.0 191,390 - +0.5 191,390 - -0.1 191,390 - +1.0 191,500 + MPMX19_03913 0.16 -0.8 191,500 + MPMX19_03913 0.16 +1.4 191,500 + MPMX19_03913 0.16 -0.1 191,500 + MPMX19_03913 0.16 +0.1 191,501 - MPMX19_03913 0.16 +0.8 191,501 - MPMX19_03913 0.16 -0.7 191,560 + MPMX19_03913 0.20 -0.3 191,560 + MPMX19_03913 0.20 -2.0 191,560 + MPMX19_03913 0.20 -0.1 191,560 + MPMX19_03913 0.20 +0.9 191,561 - MPMX19_03913 0.20 -0.4 191,561 - MPMX19_03913 0.20 -0.4 191,561 - MPMX19_03913 0.20 +1.4 191,561 - MPMX19_03913 0.20 +0.4 191,561 - MPMX19_03913 0.20 +0.1 191,561 - MPMX19_03913 0.20 -0.1 191,561 - MPMX19_03913 0.20 +0.5 191,561 - MPMX19_03913 0.20 -0.6 191,674 + MPMX19_03913 0.28 -0.5 191,674 + MPMX19_03913 0.28 -1.9 191,674 + MPMX19_03913 0.28 +0.1 191,674 + MPMX19_03913 0.28 +0.2 191,674 + MPMX19_03913 0.28 -1.1 191,674 + MPMX19_03913 0.28 -1.8 191,674 + MPMX19_03913 0.28 -1.3 191,674 + MPMX19_03913 0.28 +0.5 191,675 - MPMX19_03913 0.28 -0.9 191,675 - MPMX19_03913 0.28 +0.8 191,675 - MPMX19_03913 0.28 -0.6 191,675 - MPMX19_03913 0.28 -0.2 191,675 - MPMX19_03913 0.28 -1.1 191,675 - MPMX19_03913 0.28 +1.0 191,675 - MPMX19_03913 0.28 +0.7 191,675 - MPMX19_03913 0.28 +1.7 191,896 + MPMX19_03913 0.42 -1.1 191,896 + MPMX19_03913 0.42 -1.9 191,896 + MPMX19_03913 0.42 +0.1 191,897 - MPMX19_03913 0.42 -0.2 191,935 + MPMX19_03913 0.45 -2.0 191,935 + MPMX19_03913 0.45 -0.8 191,936 - MPMX19_03913 0.45 +0.5 191,936 - MPMX19_03913 0.45 -0.4 191,936 - MPMX19_03913 0.45 +1.0 191,944 + MPMX19_03913 0.46 -1.1 191,944 + MPMX19_03913 0.46 -0.3 191,945 - MPMX19_03913 0.46 +0.1 191,945 - MPMX19_03913 0.46 +0.9 191,945 - MPMX19_03913 0.46 -1.0 192,034 + MPMX19_03913 0.51 +0.4 192,034 + MPMX19_03913 0.51 +0.0 192,034 + MPMX19_03913 0.51 -0.8 192,034 + MPMX19_03913 0.51 +0.2 192,034 + MPMX19_03913 0.51 -1.0 192,034 + MPMX19_03913 0.51 +0.5 192,034 + MPMX19_03913 0.51 -0.8 192,034 + MPMX19_03913 0.51 +0.1 192,034 + MPMX19_03913 0.51 -0.0 192,035 - MPMX19_03913 0.52 -0.3 192,035 - MPMX19_03913 0.52 +0.2 192,035 - MPMX19_03913 0.52 -0.8 192,035 - MPMX19_03913 0.52 +0.2 192,035 - MPMX19_03913 0.52 -0.9 192,035 - MPMX19_03913 0.52 -0.3 192,035 - MPMX19_03913 0.52 -0.1 192,035 - MPMX19_03913 0.52 -0.5 192,035 - MPMX19_03913 0.52 -1.7 192,035 - MPMX19_03913 0.52 -0.3 192,035 - MPMX19_03913 0.52 -0.9 192,035 - MPMX19_03913 0.52 +1.2 192,035 - MPMX19_03913 0.52 +0.3 192,178 + MPMX19_03913 0.61 -0.1 192,178 + MPMX19_03913 0.61 -0.9 192,550 + MPMX19_03913 0.85 -3.0 192,550 + MPMX19_03913 0.85 +0.3 192,550 + MPMX19_03913 0.85 +1.2 192,551 - MPMX19_03913 0.86 -0.6 192,551 - MPMX19_03913 0.86 +0.9 192,551 - MPMX19_03913 0.86 +0.9 192,551 - MPMX19_03913 0.86 +0.8 192,551 - MPMX19_03913 0.86 -1.2 192,551 - MPMX19_03913 0.86 +1.1 192,551 - MPMX19_03913 0.86 -0.6 192,551 - MPMX19_03913 0.86 -0.8 192,868 + MPMX19_03914 0.11 -1.2 192,868 + MPMX19_03914 0.11 -1.6 192,868 + MPMX19_03914 0.11 -0.5 192,868 + MPMX19_03914 0.11 -0.5 192,868 + MPMX19_03914 0.11 -1.8 192,868 + MPMX19_03914 0.11 -0.6 192,869 - MPMX19_03914 0.12 -0.2 192,869 - MPMX19_03914 0.12 +0.2 192,869 - MPMX19_03914 0.12 -0.3 192,869 - MPMX19_03914 0.12 +0.9 192,869 - MPMX19_03914 0.12 +0.6 192,952 + MPMX19_03914 0.28 -1.2 192,952 + MPMX19_03914 0.28 -0.1 192,952 + MPMX19_03914 0.28 +0.8 192,952 + MPMX19_03914 0.28 -0.8 192,952 + MPMX19_03914 0.28 +0.3 192,952 + MPMX19_03914 0.28 +0.8 192,952 + MPMX19_03914 0.28 -0.1 192,952 + MPMX19_03914 0.28 -0.1 192,952 + MPMX19_03914 0.28 -1.2 192,952 + MPMX19_03914 0.28 +0.1 192,952 + MPMX19_03914 0.28 -1.9 192,952 + MPMX19_03914 0.28 -0.3 192,952 + MPMX19_03914 0.28 -1.1 192,952 + MPMX19_03914 0.28 +0.4 192,952 + MPMX19_03914 0.28 -0.3 192,952 + MPMX19_03914 0.28 +0.5 192,952 + MPMX19_03914 0.28 +0.2 192,952 + MPMX19_03914 0.28 -1.0 192,953 - MPMX19_03914 0.28 -0.5 192,953 - MPMX19_03914 0.28 -0.2 192,953 - MPMX19_03914 0.28 +0.2 192,953 - MPMX19_03914 0.28 -1.2 192,953 - MPMX19_03914 0.28 -1.4 192,953 - MPMX19_03914 0.28 -2.0 192,953 - MPMX19_03914 0.28 -0.9 192,953 - MPMX19_03914 0.28 -1.9 192,982 + MPMX19_03914 0.34 -1.3 192,982 + MPMX19_03914 0.34 +0.2 192,982 + MPMX19_03914 0.34 -1.9 192,982 + MPMX19_03914 0.34 -1.2 192,982 + MPMX19_03914 0.34 -1.0 192,982 + MPMX19_03914 0.34 -0.9 192,982 + MPMX19_03914 0.34 -0.6 192,982 + MPMX19_03914 0.34 -0.7 192,982 + MPMX19_03914 0.34 -0.7 192,983 - MPMX19_03914 0.34 -1.2 192,983 - MPMX19_03914 0.34 +0.7 192,983 - MPMX19_03914 0.34 +0.2 192,983 - MPMX19_03914 0.34 -1.4 192,983 - MPMX19_03914 0.34 -0.5 192,983 - MPMX19_03914 0.34 +1.7 192,983 - MPMX19_03914 0.34 -0.9 192,983 - MPMX19_03914 0.34 +0.4 192,983 - MPMX19_03914 0.34 +0.1 192,983 - MPMX19_03914 0.34 +0.7 192,983 - MPMX19_03914 0.34 -0.7 192,983 - MPMX19_03914 0.34 +2.0 192,983 - MPMX19_03914 0.34 -0.2 192,983 - MPMX19_03914 0.34 -0.1 192,983 - MPMX19_03914 0.34 +0.5 192,983 - MPMX19_03914 0.34 +0.4 192,983 - MPMX19_03914 0.34 +1.7 192,983 - MPMX19_03914 0.34 -0.6 192,983 - MPMX19_03914 0.34 +0.1 192,994 + MPMX19_03914 0.36 -1.0 192,994 + MPMX19_03914 0.36 +0.5 192,994 + MPMX19_03914 0.36 -0.5 192,994 + MPMX19_03914 0.36 -0.6 192,994 + MPMX19_03914 0.36 -2.6 192,994 + MPMX19_03914 0.36 -1.8 192,995 - MPMX19_03914 0.36 -0.3 192,995 - MPMX19_03914 0.36 +0.7 192,995 - MPMX19_03914 0.36 -0.5 192,995 - MPMX19_03914 0.36 +0.4 192,995 - MPMX19_03914 0.36 -0.2 193,040 - MPMX19_03914 0.45 -1.5 193,040 - MPMX19_03914 0.45 -1.3 193,040 - MPMX19_03914 0.45 -0.2 193,387 + -1.9 193,387 + +0.7 193,387 + -2.3 193,387 + -1.2 193,387 + -0.1 193,387 + -2.4 193,387 + -0.5 193,388 - -0.5 193,388 - -0.2 193,388 - -0.9 193,388 - +1.0 193,474 + -1.0 193,474 + +0.7 193,475 - +0.3 193,475 - -0.4 193,475 - -0.7 193,475 - -0.3
Or see this region's nucleotide sequence