Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03882 and MPMX19_03883 are separated by 87 nucleotides MPMX19_03883 and MPMX19_03884 overlap by 14 nucleotides
MPMX19_03882: MPMX19_03882 - hypothetical protein, at 137,680 to 139,572
_03882
MPMX19_03883: MPMX19_03883 - hypothetical protein, at 139,660 to 141,135
_03883
MPMX19_03884: MPMX19_03884 - hypothetical protein, at 141,122 to 142,891
_03884
Position (kb) 139
140
141
142 Strain fitness (log2 ratio) -2
-1
0
1 at 139.112 kb on + strand, within MPMX19_03882 at 139.112 kb on + strand, within MPMX19_03882 at 139.112 kb on + strand, within MPMX19_03882 at 139.112 kb on + strand, within MPMX19_03882 at 139.112 kb on + strand, within MPMX19_03882 at 139.112 kb on + strand, within MPMX19_03882 at 139.112 kb on + strand, within MPMX19_03882 at 139.112 kb on + strand, within MPMX19_03882 at 139.113 kb on - strand, within MPMX19_03882 at 139.113 kb on - strand, within MPMX19_03882 at 139.113 kb on - strand, within MPMX19_03882 at 139.113 kb on - strand, within MPMX19_03882 at 139.113 kb on - strand, within MPMX19_03882 at 139.113 kb on - strand, within MPMX19_03882 at 139.113 kb on - strand, within MPMX19_03882 at 139.584 kb on + strand at 139.584 kb on + strand at 139.585 kb on - strand at 139.585 kb on - strand at 140.255 kb on - strand, within MPMX19_03883 at 140.255 kb on - strand, within MPMX19_03883 at 140.255 kb on - strand, within MPMX19_03883 at 140.255 kb on - strand, within MPMX19_03883 at 140.359 kb on + strand, within MPMX19_03883 at 140.359 kb on + strand, within MPMX19_03883 at 140.359 kb on + strand, within MPMX19_03883 at 140.359 kb on + strand, within MPMX19_03883 at 140.360 kb on - strand, within MPMX19_03883 at 140.360 kb on - strand, within MPMX19_03883 at 140.360 kb on - strand, within MPMX19_03883 at 140.360 kb on - strand, within MPMX19_03883 at 140.360 kb on - strand, within MPMX19_03883 at 140.398 kb on + strand, within MPMX19_03883 at 140.398 kb on + strand, within MPMX19_03883 at 140.399 kb on - strand, within MPMX19_03883 at 140.602 kb on + strand, within MPMX19_03883 at 140.603 kb on - strand, within MPMX19_03883 at 141.152 kb on + strand at 141.152 kb on + strand at 141.153 kb on - strand at 141.153 kb on - strand at 141.153 kb on - strand at 141.153 kb on - strand at 141.153 kb on - strand at 141.845 kb on + strand, within MPMX19_03884 at 141.852 kb on - strand, within MPMX19_03884 at 141.852 kb on - strand, within MPMX19_03884
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 139,112 + MPMX19_03882 0.76 -0.1 139,112 + MPMX19_03882 0.76 -0.0 139,112 + MPMX19_03882 0.76 +0.2 139,112 + MPMX19_03882 0.76 +0.3 139,112 + MPMX19_03882 0.76 -0.3 139,112 + MPMX19_03882 0.76 +0.4 139,112 + MPMX19_03882 0.76 -1.3 139,112 + MPMX19_03882 0.76 +0.1 139,113 - MPMX19_03882 0.76 -1.6 139,113 - MPMX19_03882 0.76 -2.1 139,113 - MPMX19_03882 0.76 +0.7 139,113 - MPMX19_03882 0.76 -0.5 139,113 - MPMX19_03882 0.76 -1.1 139,113 - MPMX19_03882 0.76 +0.2 139,113 - MPMX19_03882 0.76 -0.2 139,584 + -1.8 139,584 + +0.4 139,585 - +0.2 139,585 - -0.5 140,255 - MPMX19_03883 0.40 -0.9 140,255 - MPMX19_03883 0.40 -0.6 140,255 - MPMX19_03883 0.40 -0.8 140,255 - MPMX19_03883 0.40 +1.0 140,359 + MPMX19_03883 0.47 +1.1 140,359 + MPMX19_03883 0.47 -0.7 140,359 + MPMX19_03883 0.47 -1.3 140,359 + MPMX19_03883 0.47 -1.3 140,360 - MPMX19_03883 0.47 -0.1 140,360 - MPMX19_03883 0.47 -1.1 140,360 - MPMX19_03883 0.47 +0.2 140,360 - MPMX19_03883 0.47 +0.1 140,360 - MPMX19_03883 0.47 +0.1 140,398 + MPMX19_03883 0.50 +0.7 140,398 + MPMX19_03883 0.50 -0.3 140,399 - MPMX19_03883 0.50 +1.0 140,602 + MPMX19_03883 0.64 -0.0 140,603 - MPMX19_03883 0.64 +0.1 141,152 + -0.5 141,152 + -0.1 141,153 - -0.9 141,153 - +0.5 141,153 - -0.9 141,153 - +0.5 141,153 - +0.7 141,845 + MPMX19_03884 0.41 +1.4 141,852 - MPMX19_03884 0.41 +0.4 141,852 - MPMX19_03884 0.41 -1.6
Or see this region's nucleotide sequence