Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03797 and MPMX19_03798 are separated by 125 nucleotides MPMX19_03798 and MPMX19_03799 are separated by 383 nucleotides
MPMX19_03797: MPMX19_03797 - hypothetical protein, at 32,110 to 33,336
_03797
MPMX19_03798: MPMX19_03798 - hypothetical protein, at 33,462 to 34,343
_03798
MPMX19_03799: MPMX19_03799 - hypothetical protein, at 34,727 to 35,869
_03799
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 32.473 kb on + strand, within MPMX19_03797 at 32.473 kb on + strand, within MPMX19_03797 at 32.473 kb on + strand, within MPMX19_03797 at 32.473 kb on + strand, within MPMX19_03797 at 32.473 kb on + strand, within MPMX19_03797 at 32.473 kb on + strand, within MPMX19_03797 at 32.473 kb on + strand, within MPMX19_03797 at 32.474 kb on - strand, within MPMX19_03797 at 32.474 kb on - strand, within MPMX19_03797 at 32.474 kb on - strand, within MPMX19_03797 at 32.474 kb on - strand, within MPMX19_03797 at 32.474 kb on - strand, within MPMX19_03797 at 32.761 kb on + strand, within MPMX19_03797 at 32.761 kb on + strand, within MPMX19_03797 at 32.761 kb on + strand, within MPMX19_03797 at 32.761 kb on + strand, within MPMX19_03797 at 32.762 kb on - strand, within MPMX19_03797 at 32.762 kb on - strand, within MPMX19_03797 at 32.762 kb on - strand, within MPMX19_03797 at 32.762 kb on - strand, within MPMX19_03797 at 32.783 kb on + strand, within MPMX19_03797 at 32.827 kb on + strand, within MPMX19_03797 at 32.827 kb on + strand, within MPMX19_03797 at 32.827 kb on + strand, within MPMX19_03797 at 32.827 kb on + strand, within MPMX19_03797 at 32.827 kb on + strand, within MPMX19_03797 at 32.827 kb on + strand, within MPMX19_03797 at 32.827 kb on + strand, within MPMX19_03797 at 32.828 kb on - strand, within MPMX19_03797 at 32.828 kb on - strand, within MPMX19_03797 at 32.828 kb on - strand, within MPMX19_03797 at 32.828 kb on - strand, within MPMX19_03797 at 32.828 kb on - strand, within MPMX19_03797 at 32.828 kb on - strand, within MPMX19_03797 at 32.828 kb on - strand, within MPMX19_03797 at 32.828 kb on - strand, within MPMX19_03797 at 32.864 kb on + strand, within MPMX19_03797 at 32.864 kb on + strand, within MPMX19_03797 at 32.864 kb on + strand, within MPMX19_03797 at 32.865 kb on - strand, within MPMX19_03797 at 32.932 kb on + strand, within MPMX19_03797 at 32.932 kb on + strand, within MPMX19_03797 at 32.932 kb on + strand, within MPMX19_03797 at 32.932 kb on + strand, within MPMX19_03797 at 32.932 kb on + strand, within MPMX19_03797 at 32.932 kb on + strand, within MPMX19_03797 at 32.932 kb on + strand, within MPMX19_03797 at 32.932 kb on + strand, within MPMX19_03797 at 32.933 kb on - strand, within MPMX19_03797 at 32.933 kb on - strand, within MPMX19_03797 at 32.933 kb on - strand, within MPMX19_03797 at 32.933 kb on - strand, within MPMX19_03797 at 32.933 kb on - strand, within MPMX19_03797 at 32.933 kb on - strand, within MPMX19_03797 at 33.003 kb on + strand, within MPMX19_03797 at 33.003 kb on + strand, within MPMX19_03797 at 33.004 kb on - strand, within MPMX19_03797 at 33.011 kb on + strand, within MPMX19_03797 at 33.082 kb on + strand, within MPMX19_03797 at 33.082 kb on + strand, within MPMX19_03797 at 33.083 kb on - strand, within MPMX19_03797 at 33.083 kb on - strand, within MPMX19_03797 at 33.175 kb on + strand, within MPMX19_03797 at 33.175 kb on + strand, within MPMX19_03797 at 33.175 kb on + strand, within MPMX19_03797 at 33.176 kb on - strand, within MPMX19_03797 at 33.176 kb on - strand, within MPMX19_03797 at 33.176 kb on - strand, within MPMX19_03797 at 33.214 kb on + strand at 33.214 kb on + strand at 33.214 kb on + strand at 33.214 kb on + strand at 33.214 kb on + strand at 33.214 kb on + strand at 33.215 kb on - strand at 33.215 kb on - strand at 33.215 kb on - strand at 33.284 kb on - strand at 33.284 kb on - strand at 33.334 kb on + strand at 33.418 kb on - strand at 33.419 kb on + strand at 33.612 kb on - strand, within MPMX19_03798 at 33.630 kb on - strand, within MPMX19_03798 at 33.716 kb on + strand, within MPMX19_03798 at 33.717 kb on - strand, within MPMX19_03798 at 33.792 kb on + strand, within MPMX19_03798 at 33.792 kb on + strand, within MPMX19_03798 at 33.795 kb on - strand, within MPMX19_03798 at 33.795 kb on - strand, within MPMX19_03798 at 33.804 kb on + strand, within MPMX19_03798 at 33.805 kb on - strand, within MPMX19_03798 at 33.807 kb on - strand, within MPMX19_03798 at 33.826 kb on + strand, within MPMX19_03798 at 33.983 kb on + strand, within MPMX19_03798 at 34.347 kb on + strand at 34.404 kb on + strand at 34.412 kb on + strand at 34.413 kb on - strand at 34.414 kb on + strand at 34.414 kb on + strand at 34.414 kb on + strand at 34.414 kb on + strand at 34.414 kb on + strand at 34.414 kb on + strand at 34.414 kb on + strand at 34.414 kb on + strand at 34.415 kb on - strand at 34.415 kb on - strand at 34.569 kb on + strand at 34.570 kb on - strand at 34.570 kb on - strand at 34.651 kb on + strand at 34.652 kb on - strand at 34.652 kb on - strand at 34.652 kb on - strand at 34.652 kb on - strand at 34.654 kb on - strand at 34.654 kb on - strand at 34.654 kb on - strand at 34.654 kb on - strand at 34.685 kb on + strand at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.849 kb on - strand, within MPMX19_03799 at 34.910 kb on + strand, within MPMX19_03799 at 34.910 kb on + strand, within MPMX19_03799 at 34.910 kb on + strand, within MPMX19_03799 at 34.910 kb on + strand, within MPMX19_03799 at 34.910 kb on + strand, within MPMX19_03799 at 34.910 kb on + strand, within MPMX19_03799 at 34.910 kb on + strand, within MPMX19_03799 at 34.911 kb on - strand, within MPMX19_03799 at 34.911 kb on - strand, within MPMX19_03799 at 34.911 kb on - strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.246 kb on + strand, within MPMX19_03799 at 35.246 kb on + strand, within MPMX19_03799 at 35.246 kb on + strand, within MPMX19_03799 at 35.247 kb on - strand, within MPMX19_03799 at 35.247 kb on - strand, within MPMX19_03799
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 32,473 + MPMX19_03797 0.30 -0.1 32,473 + MPMX19_03797 0.30 -0.3 32,473 + MPMX19_03797 0.30 +1.0 32,473 + MPMX19_03797 0.30 -2.0 32,473 + MPMX19_03797 0.30 +0.5 32,473 + MPMX19_03797 0.30 +0.7 32,473 + MPMX19_03797 0.30 -0.2 32,474 - MPMX19_03797 0.30 +0.1 32,474 - MPMX19_03797 0.30 -1.7 32,474 - MPMX19_03797 0.30 -0.7 32,474 - MPMX19_03797 0.30 -0.9 32,474 - MPMX19_03797 0.30 -1.6 32,761 + MPMX19_03797 0.53 -0.7 32,761 + MPMX19_03797 0.53 -0.7 32,761 + MPMX19_03797 0.53 +0.1 32,761 + MPMX19_03797 0.53 -0.5 32,762 - MPMX19_03797 0.53 -0.2 32,762 - MPMX19_03797 0.53 -1.0 32,762 - MPMX19_03797 0.53 -1.0 32,762 - MPMX19_03797 0.53 +0.4 32,783 + MPMX19_03797 0.55 -0.2 32,827 + MPMX19_03797 0.58 +1.4 32,827 + MPMX19_03797 0.58 -0.6 32,827 + MPMX19_03797 0.58 -0.1 32,827 + MPMX19_03797 0.58 -2.0 32,827 + MPMX19_03797 0.58 +0.1 32,827 + MPMX19_03797 0.58 -0.2 32,827 + MPMX19_03797 0.58 -0.7 32,828 - MPMX19_03797 0.59 +0.9 32,828 - MPMX19_03797 0.59 -1.9 32,828 - MPMX19_03797 0.59 -1.2 32,828 - MPMX19_03797 0.59 +1.0 32,828 - MPMX19_03797 0.59 -1.3 32,828 - MPMX19_03797 0.59 -0.8 32,828 - MPMX19_03797 0.59 +0.5 32,828 - MPMX19_03797 0.59 +0.2 32,864 + MPMX19_03797 0.61 -0.7 32,864 + MPMX19_03797 0.61 -0.7 32,864 + MPMX19_03797 0.61 -0.5 32,865 - MPMX19_03797 0.62 -0.7 32,932 + MPMX19_03797 0.67 +0.1 32,932 + MPMX19_03797 0.67 -1.5 32,932 + MPMX19_03797 0.67 -0.2 32,932 + MPMX19_03797 0.67 -1.3 32,932 + MPMX19_03797 0.67 -1.6 32,932 + MPMX19_03797 0.67 -1.6 32,932 + MPMX19_03797 0.67 +0.1 32,932 + MPMX19_03797 0.67 -0.5 32,933 - MPMX19_03797 0.67 -0.3 32,933 - MPMX19_03797 0.67 -0.8 32,933 - MPMX19_03797 0.67 -1.7 32,933 - MPMX19_03797 0.67 +2.1 32,933 - MPMX19_03797 0.67 -0.1 32,933 - MPMX19_03797 0.67 -1.0 33,003 + MPMX19_03797 0.73 +0.3 33,003 + MPMX19_03797 0.73 -1.6 33,004 - MPMX19_03797 0.73 -0.7 33,011 + MPMX19_03797 0.73 +1.3 33,082 + MPMX19_03797 0.79 -0.1 33,082 + MPMX19_03797 0.79 +0.7 33,083 - MPMX19_03797 0.79 -0.2 33,083 - MPMX19_03797 0.79 +0.5 33,175 + MPMX19_03797 0.87 +1.4 33,175 + MPMX19_03797 0.87 -1.5 33,175 + MPMX19_03797 0.87 -0.4 33,176 - MPMX19_03797 0.87 -1.1 33,176 - MPMX19_03797 0.87 +0.1 33,176 - MPMX19_03797 0.87 -0.6 33,214 + -1.9 33,214 + -0.0 33,214 + -0.8 33,214 + -0.9 33,214 + +0.9 33,214 + +1.2 33,215 - +0.8 33,215 - +0.1 33,215 - -0.3 33,284 - -0.5 33,284 - -1.7 33,334 + -2.5 33,418 - -0.3 33,419 + +0.9 33,612 - MPMX19_03798 0.17 -1.0 33,630 - MPMX19_03798 0.19 -0.3 33,716 + MPMX19_03798 0.29 -1.3 33,717 - MPMX19_03798 0.29 -1.5 33,792 + MPMX19_03798 0.37 +0.7 33,792 + MPMX19_03798 0.37 -0.1 33,795 - MPMX19_03798 0.38 +0.9 33,795 - MPMX19_03798 0.38 -0.7 33,804 + MPMX19_03798 0.39 -1.2 33,805 - MPMX19_03798 0.39 +0.1 33,807 - MPMX19_03798 0.39 -0.9 33,826 + MPMX19_03798 0.41 -0.8 33,983 + MPMX19_03798 0.59 -0.5 34,347 + -0.4 34,404 + +0.1 34,412 + +0.9 34,413 - +0.4 34,414 + -1.3 34,414 + -0.1 34,414 + -0.4 34,414 + -0.7 34,414 + +0.5 34,414 + -0.9 34,414 + -0.2 34,414 + -0.7 34,415 - -0.7 34,415 - +0.3 34,569 + -0.6 34,570 - -0.6 34,570 - -0.3 34,651 + +0.3 34,652 - -0.5 34,652 - -0.2 34,652 - -0.5 34,652 - -0.3 34,654 - +0.7 34,654 - +1.7 34,654 - -0.2 34,654 - -0.9 34,685 + +0.1 34,847 + MPMX19_03799 0.10 +0.4 34,847 + MPMX19_03799 0.10 -0.9 34,847 + MPMX19_03799 0.10 -1.9 34,847 + MPMX19_03799 0.10 +0.7 34,847 + MPMX19_03799 0.10 -0.3 34,847 + MPMX19_03799 0.10 -0.9 34,847 + MPMX19_03799 0.10 +0.8 34,847 + MPMX19_03799 0.10 -0.9 34,847 + MPMX19_03799 0.10 -2.0 34,848 - MPMX19_03799 0.11 +0.2 34,848 - MPMX19_03799 0.11 -2.2 34,848 - MPMX19_03799 0.11 -0.7 34,848 - MPMX19_03799 0.11 -1.6 34,848 - MPMX19_03799 0.11 -1.7 34,848 - MPMX19_03799 0.11 +1.4 34,848 - MPMX19_03799 0.11 +0.2 34,848 - MPMX19_03799 0.11 -0.5 34,848 - MPMX19_03799 0.11 -1.1 34,848 - MPMX19_03799 0.11 +0.2 34,848 - MPMX19_03799 0.11 -0.5 34,848 - MPMX19_03799 0.11 +0.7 34,848 - MPMX19_03799 0.11 -0.6 34,848 - MPMX19_03799 0.11 -0.3 34,848 - MPMX19_03799 0.11 +0.5 34,848 - MPMX19_03799 0.11 -0.5 34,848 - MPMX19_03799 0.11 +0.2 34,848 - MPMX19_03799 0.11 +2.7 34,848 - MPMX19_03799 0.11 -0.9 34,848 - MPMX19_03799 0.11 -0.9 34,849 - MPMX19_03799 0.11 -0.7 34,910 + MPMX19_03799 0.16 +0.1 34,910 + MPMX19_03799 0.16 +0.0 34,910 + MPMX19_03799 0.16 -0.8 34,910 + MPMX19_03799 0.16 -1.4 34,910 + MPMX19_03799 0.16 -0.7 34,910 + MPMX19_03799 0.16 -0.8 34,910 + MPMX19_03799 0.16 -0.4 34,911 - MPMX19_03799 0.16 +0.2 34,911 - MPMX19_03799 0.16 -0.2 34,911 - MPMX19_03799 0.16 +0.6 35,075 + MPMX19_03799 0.30 +0.0 35,075 + MPMX19_03799 0.30 -0.9 35,075 + MPMX19_03799 0.30 +0.3 35,075 + MPMX19_03799 0.30 -0.2 35,075 + MPMX19_03799 0.30 -0.2 35,075 + MPMX19_03799 0.30 -0.5 35,075 + MPMX19_03799 0.30 -0.6 35,075 + MPMX19_03799 0.30 -0.6 35,075 + MPMX19_03799 0.30 -0.5 35,075 + MPMX19_03799 0.30 -1.2 35,076 - MPMX19_03799 0.31 -0.1 35,076 - MPMX19_03799 0.31 -0.1 35,076 - MPMX19_03799 0.31 -1.7 35,076 - MPMX19_03799 0.31 +1.3 35,076 - MPMX19_03799 0.31 -0.3 35,076 - MPMX19_03799 0.31 +3.2 35,076 - MPMX19_03799 0.31 -0.8 35,076 - MPMX19_03799 0.31 +0.2 35,076 - MPMX19_03799 0.31 -1.4 35,246 + MPMX19_03799 0.45 -1.3 35,246 + MPMX19_03799 0.45 -0.1 35,246 + MPMX19_03799 0.45 +0.2 35,247 - MPMX19_03799 0.45 -1.9 35,247 - MPMX19_03799 0.45 -2.1
Or see this region's nucleotide sequence