Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03719 and MPMX19_03720 are separated by 224 nucleotides MPMX19_03720 and MPMX19_03721 are separated by 241 nucleotides MPMX19_03721 and MPMX19_03722 are separated by 33 nucleotides
MPMX19_03719: MPMX19_03719 - hypothetical protein, at 1,162,574 to 1,164,445
_03719
MPMX19_03720: MPMX19_03720 - hypothetical protein, at 1,164,670 to 1,165,212
_03720
MPMX19_03721: MPMX19_03721 - hypothetical protein, at 1,165,454 to 1,165,930
_03721
MPMX19_03722: MPMX19_03722 - hypothetical protein, at 1,165,964 to 1,166,311
_03722
Position (kb) 1164
1165
1166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1163.670 kb on + strand, within MPMX19_03719 at 1163.671 kb on - strand, within MPMX19_03719 at 1163.688 kb on + strand, within MPMX19_03719 at 1163.688 kb on + strand, within MPMX19_03719 at 1163.689 kb on - strand, within MPMX19_03719 at 1163.689 kb on - strand, within MPMX19_03719 at 1164.057 kb on + strand, within MPMX19_03719 at 1164.057 kb on + strand, within MPMX19_03719 at 1164.057 kb on + strand, within MPMX19_03719 at 1164.057 kb on + strand, within MPMX19_03719 at 1164.058 kb on - strand, within MPMX19_03719 at 1164.058 kb on - strand, within MPMX19_03719 at 1164.066 kb on + strand, within MPMX19_03719 at 1164.066 kb on + strand, within MPMX19_03719 at 1164.066 kb on + strand, within MPMX19_03719 at 1164.066 kb on + strand, within MPMX19_03719 at 1164.066 kb on + strand, within MPMX19_03719 at 1164.067 kb on - strand, within MPMX19_03719 at 1164.067 kb on - strand, within MPMX19_03719 at 1164.067 kb on - strand, within MPMX19_03719 at 1164.067 kb on - strand, within MPMX19_03719 at 1164.067 kb on - strand, within MPMX19_03719 at 1164.067 kb on - strand, within MPMX19_03719 at 1164.067 kb on - strand, within MPMX19_03719 at 1164.067 kb on - strand, within MPMX19_03719 at 1164.067 kb on - strand, within MPMX19_03719 at 1164.268 kb on + strand at 1164.268 kb on + strand at 1164.268 kb on + strand at 1164.269 kb on - strand at 1164.269 kb on - strand at 1164.269 kb on - strand at 1164.269 kb on - strand at 1164.269 kb on - strand at 1164.298 kb on + strand at 1164.298 kb on + strand at 1164.298 kb on + strand at 1164.299 kb on - strand at 1164.299 kb on - strand at 1164.299 kb on - strand at 1164.492 kb on - strand at 1164.612 kb on - strand at 1165.374 kb on + strand at 1165.374 kb on + strand at 1165.374 kb on + strand at 1165.374 kb on + strand at 1165.374 kb on + strand at 1165.375 kb on - strand at 1165.375 kb on - strand at 1165.375 kb on - strand at 1165.375 kb on - strand at 1165.375 kb on - strand at 1165.986 kb on + strand at 1165.987 kb on - strand at 1165.987 kb on - strand at 1166.137 kb on + strand, within MPMX19_03722 at 1166.137 kb on + strand, within MPMX19_03722
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 1,163,670 + MPMX19_03719 0.59 -1.0 1,163,671 - MPMX19_03719 0.59 +0.0 1,163,688 + MPMX19_03719 0.60 -0.5 1,163,688 + MPMX19_03719 0.60 -0.4 1,163,689 - MPMX19_03719 0.60 +0.1 1,163,689 - MPMX19_03719 0.60 -0.5 1,164,057 + MPMX19_03719 0.79 +0.5 1,164,057 + MPMX19_03719 0.79 +0.4 1,164,057 + MPMX19_03719 0.79 +0.5 1,164,057 + MPMX19_03719 0.79 -1.5 1,164,058 - MPMX19_03719 0.79 -0.0 1,164,058 - MPMX19_03719 0.79 +0.7 1,164,066 + MPMX19_03719 0.80 +2.1 1,164,066 + MPMX19_03719 0.80 +0.5 1,164,066 + MPMX19_03719 0.80 -0.3 1,164,066 + MPMX19_03719 0.80 -1.3 1,164,066 + MPMX19_03719 0.80 -1.2 1,164,067 - MPMX19_03719 0.80 -0.0 1,164,067 - MPMX19_03719 0.80 -0.5 1,164,067 - MPMX19_03719 0.80 +0.3 1,164,067 - MPMX19_03719 0.80 -0.5 1,164,067 - MPMX19_03719 0.80 -0.9 1,164,067 - MPMX19_03719 0.80 +0.4 1,164,067 - MPMX19_03719 0.80 +0.1 1,164,067 - MPMX19_03719 0.80 -0.4 1,164,067 - MPMX19_03719 0.80 +0.5 1,164,268 + -0.2 1,164,268 + +1.1 1,164,268 + +1.5 1,164,269 - +0.4 1,164,269 - -0.7 1,164,269 - +1.0 1,164,269 - -1.5 1,164,269 - -0.0 1,164,298 + -0.0 1,164,298 + +0.3 1,164,298 + -3.0 1,164,299 - -1.4 1,164,299 - +0.4 1,164,299 - -1.9 1,164,492 - -1.2 1,164,612 - -1.1 1,165,374 + -1.5 1,165,374 + -0.5 1,165,374 + -1.8 1,165,374 + -0.1 1,165,374 + -0.5 1,165,375 - -1.9 1,165,375 - -0.7 1,165,375 - -0.3 1,165,375 - -0.8 1,165,375 - +0.7 1,165,986 + -0.2 1,165,987 - +0.4 1,165,987 - -1.5 1,166,137 + MPMX19_03722 0.50 -1.7 1,166,137 + MPMX19_03722 0.50 -1.5
Or see this region's nucleotide sequence