Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03555 and MPMX19_03556 are separated by 29 nucleotides MPMX19_03556 and MPMX19_03557 are separated by 162 nucleotides
MPMX19_03555: MPMX19_03555 - Aerobic C4-dicarboxylate transport protein, at 974,426 to 975,805
_03555
MPMX19_03556: MPMX19_03556 - Putative isomerase YbhH, at 975,835 to 976,935
_03556
MPMX19_03557: MPMX19_03557 - HTH-type transcriptional regulator CynR, at 977,098 to 977,988
_03557
Position (kb) 975
976
977 Strain fitness (log2 ratio) -2
-1
0
1
2 at 974.844 kb on + strand, within MPMX19_03555 at 974.844 kb on + strand, within MPMX19_03555 at 974.844 kb on + strand, within MPMX19_03555 at 974.845 kb on - strand, within MPMX19_03555 at 974.845 kb on - strand, within MPMX19_03555 at 974.845 kb on - strand, within MPMX19_03555 at 974.845 kb on - strand, within MPMX19_03555 at 974.845 kb on - strand, within MPMX19_03555 at 974.845 kb on - strand, within MPMX19_03555 at 974.845 kb on - strand, within MPMX19_03555 at 974.845 kb on - strand, within MPMX19_03555 at 974.845 kb on - strand, within MPMX19_03555 at 974.845 kb on - strand, within MPMX19_03555 at 974.874 kb on + strand, within MPMX19_03555 at 974.874 kb on + strand, within MPMX19_03555 at 974.874 kb on + strand, within MPMX19_03555 at 974.875 kb on - strand, within MPMX19_03555 at 975.003 kb on + strand, within MPMX19_03555 at 975.004 kb on - strand, within MPMX19_03555 at 975.004 kb on - strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.087 kb on + strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.088 kb on - strand, within MPMX19_03555 at 975.135 kb on + strand, within MPMX19_03555 at 975.135 kb on + strand, within MPMX19_03555 at 975.135 kb on + strand, within MPMX19_03555 at 975.136 kb on - strand, within MPMX19_03555 at 975.136 kb on - strand, within MPMX19_03555 at 975.136 kb on - strand, within MPMX19_03555 at 975.136 kb on - strand, within MPMX19_03555 at 975.523 kb on - strand, within MPMX19_03555 at 975.523 kb on - strand, within MPMX19_03555 at 975.523 kb on - strand, within MPMX19_03555 at 975.523 kb on - strand, within MPMX19_03555 at 975.523 kb on - strand, within MPMX19_03555 at 975.738 kb on + strand at 975.738 kb on + strand at 975.738 kb on + strand at 975.739 kb on - strand at 975.739 kb on - strand at 975.739 kb on - strand at 975.750 kb on + strand at 975.750 kb on + strand at 975.750 kb on + strand at 975.751 kb on - strand at 975.751 kb on - strand at 975.751 kb on - strand at 975.751 kb on - strand at 975.805 kb on + strand at 975.805 kb on + strand at 975.805 kb on + strand at 975.805 kb on + strand at 975.806 kb on - strand at 975.806 kb on - strand at 975.806 kb on - strand at 975.806 kb on - strand at 975.806 kb on - strand at 975.806 kb on - strand at 975.806 kb on - strand at 976.115 kb on + strand, within MPMX19_03556 at 976.115 kb on + strand, within MPMX19_03556 at 976.283 kb on + strand, within MPMX19_03556 at 976.283 kb on + strand, within MPMX19_03556 at 976.487 kb on + strand, within MPMX19_03556 at 976.487 kb on + strand, within MPMX19_03556 at 976.487 kb on + strand, within MPMX19_03556 at 976.487 kb on + strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.691 kb on + strand, within MPMX19_03556 at 976.691 kb on + strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 977.032 kb on + strand at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.758 kb on + strand, within MPMX19_03557 at 977.758 kb on + strand, within MPMX19_03557
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 974,844 + MPMX19_03555 0.30 +0.8 974,844 + MPMX19_03555 0.30 -1.6 974,844 + MPMX19_03555 0.30 -1.1 974,845 - MPMX19_03555 0.30 -1.5 974,845 - MPMX19_03555 0.30 -0.8 974,845 - MPMX19_03555 0.30 -1.5 974,845 - MPMX19_03555 0.30 -0.9 974,845 - MPMX19_03555 0.30 -1.5 974,845 - MPMX19_03555 0.30 +0.3 974,845 - MPMX19_03555 0.30 +0.9 974,845 - MPMX19_03555 0.30 -0.2 974,845 - MPMX19_03555 0.30 +0.3 974,845 - MPMX19_03555 0.30 -0.7 974,874 + MPMX19_03555 0.32 -0.7 974,874 + MPMX19_03555 0.32 -0.5 974,874 + MPMX19_03555 0.32 -0.2 974,875 - MPMX19_03555 0.33 -0.5 975,003 + MPMX19_03555 0.42 +0.1 975,004 - MPMX19_03555 0.42 -0.5 975,004 - MPMX19_03555 0.42 -0.5 975,087 + MPMX19_03555 0.48 -0.8 975,087 + MPMX19_03555 0.48 +0.5 975,087 + MPMX19_03555 0.48 -0.7 975,087 + MPMX19_03555 0.48 -0.2 975,087 + MPMX19_03555 0.48 -0.3 975,087 + MPMX19_03555 0.48 -1.5 975,087 + MPMX19_03555 0.48 -1.2 975,087 + MPMX19_03555 0.48 -2.1 975,087 + MPMX19_03555 0.48 -0.3 975,087 + MPMX19_03555 0.48 +0.2 975,087 + MPMX19_03555 0.48 +0.2 975,087 + MPMX19_03555 0.48 +0.0 975,087 + MPMX19_03555 0.48 -0.3 975,087 + MPMX19_03555 0.48 +0.4 975,087 + MPMX19_03555 0.48 +0.0 975,087 + MPMX19_03555 0.48 +1.5 975,087 + MPMX19_03555 0.48 -0.6 975,088 - MPMX19_03555 0.48 +0.3 975,088 - MPMX19_03555 0.48 -0.2 975,088 - MPMX19_03555 0.48 -0.8 975,088 - MPMX19_03555 0.48 -0.6 975,088 - MPMX19_03555 0.48 -0.5 975,088 - MPMX19_03555 0.48 -0.8 975,088 - MPMX19_03555 0.48 +0.7 975,088 - MPMX19_03555 0.48 -1.9 975,088 - MPMX19_03555 0.48 -1.6 975,088 - MPMX19_03555 0.48 -2.7 975,088 - MPMX19_03555 0.48 -0.5 975,088 - MPMX19_03555 0.48 -0.4 975,088 - MPMX19_03555 0.48 +0.7 975,088 - MPMX19_03555 0.48 -1.5 975,088 - MPMX19_03555 0.48 +0.1 975,088 - MPMX19_03555 0.48 -1.3 975,088 - MPMX19_03555 0.48 -0.3 975,088 - MPMX19_03555 0.48 -0.9 975,088 - MPMX19_03555 0.48 -0.5 975,088 - MPMX19_03555 0.48 -1.5 975,088 - MPMX19_03555 0.48 -0.1 975,088 - MPMX19_03555 0.48 -0.6 975,088 - MPMX19_03555 0.48 +1.2 975,135 + MPMX19_03555 0.51 +0.1 975,135 + MPMX19_03555 0.51 +0.4 975,135 + MPMX19_03555 0.51 -2.6 975,136 - MPMX19_03555 0.51 -1.5 975,136 - MPMX19_03555 0.51 +0.1 975,136 - MPMX19_03555 0.51 +0.9 975,136 - MPMX19_03555 0.51 +0.5 975,523 - MPMX19_03555 0.79 -0.5 975,523 - MPMX19_03555 0.79 -2.0 975,523 - MPMX19_03555 0.79 -0.0 975,523 - MPMX19_03555 0.79 +0.3 975,523 - MPMX19_03555 0.79 -0.9 975,738 + +0.7 975,738 + -0.1 975,738 + -0.5 975,739 - +0.7 975,739 - -0.6 975,739 - -0.3 975,750 + -2.1 975,750 + -0.4 975,750 + +0.5 975,751 - +0.0 975,751 - -1.4 975,751 - -0.8 975,751 - -1.5 975,805 + -1.5 975,805 + +0.5 975,805 + +0.5 975,805 + -0.8 975,806 - +0.2 975,806 - -0.9 975,806 - +0.2 975,806 - +0.0 975,806 - -1.0 975,806 - -0.6 975,806 - -2.1 976,115 + MPMX19_03556 0.25 -0.3 976,115 + MPMX19_03556 0.25 +0.8 976,283 + MPMX19_03556 0.41 -2.1 976,283 + MPMX19_03556 0.41 -0.7 976,487 + MPMX19_03556 0.59 -1.9 976,487 + MPMX19_03556 0.59 -0.6 976,487 + MPMX19_03556 0.59 -1.1 976,487 + MPMX19_03556 0.59 -1.1 976,488 - MPMX19_03556 0.59 -1.3 976,488 - MPMX19_03556 0.59 -0.6 976,488 - MPMX19_03556 0.59 -1.3 976,488 - MPMX19_03556 0.59 -0.1 976,488 - MPMX19_03556 0.59 -0.3 976,488 - MPMX19_03556 0.59 -0.1 976,691 + MPMX19_03556 0.78 -0.7 976,691 + MPMX19_03556 0.78 -1.9 976,692 - MPMX19_03556 0.78 -0.5 976,692 - MPMX19_03556 0.78 -1.3 976,692 - MPMX19_03556 0.78 -2.1 976,692 - MPMX19_03556 0.78 -0.3 976,692 - MPMX19_03556 0.78 +0.4 977,032 + -1.3 977,413 + MPMX19_03557 0.35 -0.8 977,413 + MPMX19_03557 0.35 +0.3 977,413 + MPMX19_03557 0.35 +0.1 977,413 + MPMX19_03557 0.35 -0.3 977,413 + MPMX19_03557 0.35 +1.0 977,413 + MPMX19_03557 0.35 -1.2 977,413 + MPMX19_03557 0.35 +2.5 977,413 + MPMX19_03557 0.35 -0.8 977,414 - MPMX19_03557 0.35 -1.4 977,414 - MPMX19_03557 0.35 -0.2 977,414 - MPMX19_03557 0.35 +0.5 977,414 - MPMX19_03557 0.35 +2.0 977,414 - MPMX19_03557 0.35 -1.6 977,758 + MPMX19_03557 0.74 +0.1 977,758 + MPMX19_03557 0.74 +0.3
Or see this region's nucleotide sequence