Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03491 and MPMX19_03492 are separated by 289 nucleotides MPMX19_03492 and MPMX19_03493 are separated by 285 nucleotides
MPMX19_03491: MPMX19_03491 - putative FAD-linked oxidoreductase, at 904,483 to 905,904
_03491
MPMX19_03492: MPMX19_03492 - 3'-5' exonuclease DinG, at 906,194 to 907,132
_03492
MPMX19_03493: MPMX19_03493 - hypothetical protein, at 907,418 to 909,121
_03493
Position (kb) 906
907
908 Strain fitness (log2 ratio) -2
-1
0
1 at 905.336 kb on + strand, within MPMX19_03491 at 905.363 kb on + strand, within MPMX19_03491 at 905.363 kb on + strand, within MPMX19_03491 at 905.519 kb on + strand, within MPMX19_03491 at 905.926 kb on + strand at 905.926 kb on + strand at 905.926 kb on + strand at 905.926 kb on + strand at 905.927 kb on - strand at 905.927 kb on - strand at 905.927 kb on - strand at 905.927 kb on - strand at 905.968 kb on + strand at 905.969 kb on - strand at 906.011 kb on + strand at 906.011 kb on + strand at 906.012 kb on - strand at 906.012 kb on - strand at 906.012 kb on - strand at 906.140 kb on + strand at 906.211 kb on + strand at 906.211 kb on + strand at 906.212 kb on - strand at 906.212 kb on - strand at 906.212 kb on - strand at 906.212 kb on - strand at 906.212 kb on - strand at 906.212 kb on - strand at 906.879 kb on - strand, within MPMX19_03492 at 906.879 kb on - strand, within MPMX19_03492 at 906.879 kb on - strand, within MPMX19_03492 at 906.989 kb on + strand, within MPMX19_03492 at 906.989 kb on + strand, within MPMX19_03492 at 906.989 kb on + strand, within MPMX19_03492 at 906.989 kb on + strand, within MPMX19_03492 at 906.989 kb on + strand, within MPMX19_03492 at 906.989 kb on + strand, within MPMX19_03492 at 906.989 kb on + strand, within MPMX19_03492 at 906.990 kb on - strand, within MPMX19_03492 at 906.990 kb on - strand, within MPMX19_03492 at 906.990 kb on - strand, within MPMX19_03492 at 906.990 kb on - strand, within MPMX19_03492 at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.186 kb on - strand at 907.186 kb on - strand at 907.186 kb on - strand at 907.186 kb on - strand at 907.186 kb on - strand at 907.186 kb on - strand at 907.186 kb on - strand at 907.186 kb on - strand at 907.368 kb on + strand at 907.368 kb on + strand at 907.369 kb on - strand at 907.369 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 905,336 + MPMX19_03491 0.60 -1.8 905,363 + MPMX19_03491 0.62 -0.8 905,363 + MPMX19_03491 0.62 +0.2 905,519 + MPMX19_03491 0.73 -0.2 905,926 + -1.1 905,926 + +0.5 905,926 + -0.3 905,926 + -0.1 905,927 - +0.3 905,927 - -1.5 905,927 - -0.5 905,927 - -0.9 905,968 + -1.9 905,969 - +0.3 906,011 + -1.8 906,011 + -1.3 906,012 - -0.2 906,012 - -0.0 906,012 - -2.4 906,140 + -0.8 906,211 + -1.1 906,211 + -1.1 906,212 - -0.5 906,212 - -0.8 906,212 - +0.5 906,212 - -0.4 906,212 - -0.7 906,212 - -0.8 906,879 - MPMX19_03492 0.73 -1.7 906,879 - MPMX19_03492 0.73 -0.2 906,879 - MPMX19_03492 0.73 -1.5 906,989 + MPMX19_03492 0.85 -2.5 906,989 + MPMX19_03492 0.85 -1.1 906,989 + MPMX19_03492 0.85 -0.2 906,989 + MPMX19_03492 0.85 -0.9 906,989 + MPMX19_03492 0.85 -1.1 906,989 + MPMX19_03492 0.85 -0.8 906,989 + MPMX19_03492 0.85 -0.7 906,990 - MPMX19_03492 0.85 -0.8 906,990 - MPMX19_03492 0.85 -0.1 906,990 - MPMX19_03492 0.85 -0.1 906,990 - MPMX19_03492 0.85 -0.1 907,055 + +0.2 907,055 + -0.1 907,055 + -0.4 907,056 - -0.5 907,056 - -1.4 907,185 + +0.6 907,185 + -0.7 907,185 + -0.4 907,185 + +0.5 907,185 + +1.5 907,185 + +0.3 907,185 + -0.7 907,185 + +0.6 907,185 + -0.4 907,186 - +0.5 907,186 - -0.1 907,186 - -0.1 907,186 - -0.7 907,186 - -0.7 907,186 - -0.5 907,186 - -0.5 907,186 - +0.1 907,368 + +0.6 907,368 + -0.7 907,369 - -1.5 907,369 - -1.5
Or see this region's nucleotide sequence