Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03281 and MPMX19_03282 are separated by 39 nucleotides MPMX19_03282 and MPMX19_03283 are separated by 101 nucleotides MPMX19_03283 and MPMX19_03284 are separated by 59 nucleotides
MPMX19_03281: MPMX19_03281 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 627,072 to 627,818
_03281
MPMX19_03282: MPMX19_03282 - HTH-type transcriptional regulator McbR, at 627,858 to 628,541
_03282
MPMX19_03283: MPMX19_03283 - Glutamate-1-semialdehyde 2,1-aminomutase, at 628,643 to 629,956
_03283
MPMX19_03284: MPMX19_03284 - Apulose-4-phosphate transketolase subunit B, at 630,016 to 631,047
_03284
Position (kb) 628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 627.738 kb on + strand, within MPMX19_03281 at 627.738 kb on + strand, within MPMX19_03281 at 627.739 kb on - strand, within MPMX19_03281 at 627.739 kb on - strand, within MPMX19_03281 at 627.739 kb on - strand, within MPMX19_03281 at 627.791 kb on + strand at 627.792 kb on - strand at 628.012 kb on + strand, within MPMX19_03282 at 628.012 kb on + strand, within MPMX19_03282 at 628.012 kb on + strand, within MPMX19_03282 at 628.012 kb on + strand, within MPMX19_03282 at 628.012 kb on + strand, within MPMX19_03282 at 628.013 kb on - strand, within MPMX19_03282 at 628.036 kb on + strand, within MPMX19_03282 at 628.036 kb on + strand, within MPMX19_03282 at 628.036 kb on + strand, within MPMX19_03282 at 628.037 kb on - strand, within MPMX19_03282 at 628.037 kb on - strand, within MPMX19_03282 at 628.037 kb on - strand, within MPMX19_03282 at 628.149 kb on + strand, within MPMX19_03282 at 628.149 kb on + strand, within MPMX19_03282 at 628.149 kb on + strand, within MPMX19_03282 at 628.149 kb on + strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.300 kb on + strand, within MPMX19_03282 at 628.300 kb on + strand, within MPMX19_03282 at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.622 kb on + strand at 628.622 kb on + strand at 628.622 kb on + strand at 628.623 kb on - strand at 628.623 kb on - strand at 628.624 kb on + strand at 628.624 kb on + strand at 628.624 kb on + strand at 628.629 kb on + strand at 628.629 kb on + strand at 628.629 kb on + strand at 628.629 kb on + strand at 628.629 kb on + strand at 628.630 kb on - strand at 628.630 kb on - strand at 628.743 kb on + strand at 628.743 kb on + strand at 628.743 kb on + strand at 628.743 kb on + strand at 628.743 kb on + strand at 628.744 kb on - strand at 628.744 kb on - strand at 628.846 kb on - strand, within MPMX19_03283 at 628.846 kb on - strand, within MPMX19_03283 at 628.872 kb on + strand, within MPMX19_03283 at 628.872 kb on + strand, within MPMX19_03283 at 628.872 kb on + strand, within MPMX19_03283 at 628.872 kb on + strand, within MPMX19_03283 at 628.872 kb on + strand, within MPMX19_03283 at 628.872 kb on + strand, within MPMX19_03283 at 628.873 kb on - strand, within MPMX19_03283 at 628.873 kb on - strand, within MPMX19_03283 at 628.873 kb on - strand, within MPMX19_03283 at 628.893 kb on + strand, within MPMX19_03283 at 628.894 kb on - strand, within MPMX19_03283 at 628.983 kb on + strand, within MPMX19_03283 at 628.983 kb on + strand, within MPMX19_03283 at 628.983 kb on + strand, within MPMX19_03283 at 628.983 kb on + strand, within MPMX19_03283 at 628.983 kb on + strand, within MPMX19_03283 at 628.984 kb on - strand, within MPMX19_03283 at 628.984 kb on - strand, within MPMX19_03283 at 628.984 kb on - strand, within MPMX19_03283 at 628.984 kb on - strand, within MPMX19_03283 at 628.984 kb on - strand, within MPMX19_03283 at 629.202 kb on + strand, within MPMX19_03283 at 629.382 kb on + strand, within MPMX19_03283 at 629.382 kb on + strand, within MPMX19_03283 at 629.383 kb on - strand, within MPMX19_03283 at 629.409 kb on + strand, within MPMX19_03283 at 629.409 kb on + strand, within MPMX19_03283 at 629.409 kb on + strand, within MPMX19_03283 at 629.409 kb on + strand, within MPMX19_03283 at 629.409 kb on + strand, within MPMX19_03283 at 629.409 kb on + strand, within MPMX19_03283 at 629.410 kb on - strand, within MPMX19_03283 at 629.410 kb on - strand, within MPMX19_03283 at 629.410 kb on - strand, within MPMX19_03283 at 629.425 kb on + strand, within MPMX19_03283 at 629.425 kb on + strand, within MPMX19_03283 at 629.425 kb on + strand, within MPMX19_03283 at 629.425 kb on + strand, within MPMX19_03283 at 629.425 kb on + strand, within MPMX19_03283 at 629.425 kb on + strand, within MPMX19_03283 at 629.426 kb on - strand, within MPMX19_03283 at 629.426 kb on - strand, within MPMX19_03283 at 629.426 kb on - strand, within MPMX19_03283 at 629.426 kb on - strand, within MPMX19_03283 at 629.426 kb on - strand, within MPMX19_03283 at 629.426 kb on - strand, within MPMX19_03283 at 629.514 kb on + strand, within MPMX19_03283 at 629.514 kb on + strand, within MPMX19_03283 at 629.514 kb on + strand, within MPMX19_03283 at 629.515 kb on - strand, within MPMX19_03283 at 629.515 kb on - strand, within MPMX19_03283 at 629.533 kb on - strand, within MPMX19_03283 at 629.598 kb on + strand, within MPMX19_03283 at 629.598 kb on + strand, within MPMX19_03283 at 629.598 kb on + strand, within MPMX19_03283 at 629.598 kb on + strand, within MPMX19_03283 at 629.598 kb on + strand, within MPMX19_03283 at 629.598 kb on + strand, within MPMX19_03283 at 629.598 kb on + strand, within MPMX19_03283 at 629.598 kb on + strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.599 kb on - strand, within MPMX19_03283 at 629.796 kb on + strand, within MPMX19_03283 at 629.796 kb on + strand, within MPMX19_03283 at 629.796 kb on + strand, within MPMX19_03283 at 629.797 kb on - strand, within MPMX19_03283 at 629.803 kb on + strand, within MPMX19_03283 at 629.803 kb on + strand, within MPMX19_03283 at 629.803 kb on + strand, within MPMX19_03283 at 629.803 kb on + strand, within MPMX19_03283 at 629.804 kb on - strand, within MPMX19_03283 at 629.804 kb on - strand, within MPMX19_03283 at 629.804 kb on - strand, within MPMX19_03283 at 629.804 kb on - strand, within MPMX19_03283 at 629.804 kb on - strand, within MPMX19_03283 at 629.804 kb on - strand, within MPMX19_03283 at 629.804 kb on - strand, within MPMX19_03283 at 629.804 kb on - strand, within MPMX19_03283 at 629.827 kb on - strand at 629.827 kb on - strand at 629.827 kb on - strand at 629.832 kb on + strand at 629.833 kb on - strand at 629.833 kb on - strand at 629.859 kb on + strand at 629.859 kb on + strand at 629.859 kb on + strand at 629.859 kb on + strand at 629.859 kb on + strand at 629.859 kb on + strand at 629.859 kb on + strand at 629.859 kb on + strand at 629.860 kb on - strand at 629.860 kb on - strand at 629.860 kb on - strand at 629.860 kb on - strand at 629.860 kb on - strand at 629.860 kb on - strand at 629.860 kb on - strand at 629.860 kb on - strand at 629.860 kb on - strand at 630.068 kb on + strand at 630.078 kb on - strand at 630.107 kb on + strand at 630.107 kb on + strand at 630.107 kb on + strand at 630.438 kb on - strand, within MPMX19_03284 at 630.473 kb on + strand, within MPMX19_03284 at 630.474 kb on - strand, within MPMX19_03284 at 630.474 kb on - strand, within MPMX19_03284 at 630.474 kb on - strand, within MPMX19_03284 at 630.474 kb on - strand, within MPMX19_03284 at 630.474 kb on - strand, within MPMX19_03284 at 630.474 kb on - strand, within MPMX19_03284 at 630.474 kb on - strand, within MPMX19_03284 at 630.608 kb on + strand, within MPMX19_03284 at 630.608 kb on + strand, within MPMX19_03284 at 630.609 kb on - strand, within MPMX19_03284 at 630.609 kb on - strand, within MPMX19_03284 at 630.609 kb on - strand, within MPMX19_03284 at 630.609 kb on - strand, within MPMX19_03284 at 630.609 kb on - strand, within MPMX19_03284 at 630.609 kb on - strand, within MPMX19_03284 at 630.665 kb on + strand, within MPMX19_03284 at 630.666 kb on - strand, within MPMX19_03284 at 630.851 kb on + strand, within MPMX19_03284 at 630.852 kb on - strand, within MPMX19_03284 at 630.852 kb on - strand, within MPMX19_03284 at 630.852 kb on - strand, within MPMX19_03284 at 630.923 kb on + strand, within MPMX19_03284 at 630.923 kb on + strand, within MPMX19_03284 at 630.923 kb on + strand, within MPMX19_03284 at 630.923 kb on + strand, within MPMX19_03284 at 630.923 kb on + strand, within MPMX19_03284 at 630.923 kb on + strand, within MPMX19_03284 at 630.924 kb on - strand, within MPMX19_03284 at 630.924 kb on - strand, within MPMX19_03284 at 630.924 kb on - strand, within MPMX19_03284 at 630.924 kb on - strand, within MPMX19_03284
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 627,738 + MPMX19_03281 0.89 -0.0 627,738 + MPMX19_03281 0.89 -0.6 627,739 - MPMX19_03281 0.89 +0.2 627,739 - MPMX19_03281 0.89 +1.0 627,739 - MPMX19_03281 0.89 +1.3 627,791 + +0.1 627,792 - +0.4 628,012 + MPMX19_03282 0.23 +1.5 628,012 + MPMX19_03282 0.23 -0.7 628,012 + MPMX19_03282 0.23 -0.0 628,012 + MPMX19_03282 0.23 -0.4 628,012 + MPMX19_03282 0.23 -0.6 628,013 - MPMX19_03282 0.23 -0.3 628,036 + MPMX19_03282 0.26 -0.9 628,036 + MPMX19_03282 0.26 -1.8 628,036 + MPMX19_03282 0.26 -0.7 628,037 - MPMX19_03282 0.26 -1.0 628,037 - MPMX19_03282 0.26 -1.3 628,037 - MPMX19_03282 0.26 -2.6 628,149 + MPMX19_03282 0.43 -0.8 628,149 + MPMX19_03282 0.43 -2.2 628,149 + MPMX19_03282 0.43 -0.0 628,149 + MPMX19_03282 0.43 -0.0 628,150 - MPMX19_03282 0.43 +2.5 628,150 - MPMX19_03282 0.43 +0.5 628,150 - MPMX19_03282 0.43 -0.9 628,150 - MPMX19_03282 0.43 -0.0 628,150 - MPMX19_03282 0.43 -0.5 628,300 + MPMX19_03282 0.65 -0.2 628,300 + MPMX19_03282 0.65 +0.3 628,495 + -2.3 628,495 + +0.3 628,495 + -0.8 628,495 + -0.7 628,495 + +0.0 628,495 + +0.8 628,495 + +1.3 628,495 + -0.5 628,495 + +0.5 628,496 - +0.3 628,496 - -0.6 628,496 - -1.5 628,496 - +1.5 628,496 - -2.9 628,496 - +0.3 628,496 - +0.5 628,496 - -1.3 628,496 - -1.1 628,496 - -1.5 628,622 + -0.5 628,622 + +0.1 628,622 + -0.3 628,623 - -0.5 628,623 - -1.2 628,624 + -0.2 628,624 + -1.9 628,624 + -0.3 628,629 + +0.4 628,629 + -0.2 628,629 + +1.5 628,629 + -1.5 628,629 + -1.8 628,630 - +1.4 628,630 - -1.8 628,743 + +0.2 628,743 + -1.3 628,743 + -1.3 628,743 + -0.3 628,743 + -0.2 628,744 - +0.1 628,744 - -0.6 628,846 - MPMX19_03283 0.15 -0.8 628,846 - MPMX19_03283 0.15 +0.1 628,872 + MPMX19_03283 0.17 -0.5 628,872 + MPMX19_03283 0.17 -0.5 628,872 + MPMX19_03283 0.17 +0.5 628,872 + MPMX19_03283 0.17 -1.6 628,872 + MPMX19_03283 0.17 -0.6 628,872 + MPMX19_03283 0.17 +0.1 628,873 - MPMX19_03283 0.18 -0.5 628,873 - MPMX19_03283 0.18 +0.7 628,873 - MPMX19_03283 0.18 -0.0 628,893 + MPMX19_03283 0.19 -0.0 628,894 - MPMX19_03283 0.19 +1.0 628,983 + MPMX19_03283 0.26 +0.6 628,983 + MPMX19_03283 0.26 -1.5 628,983 + MPMX19_03283 0.26 +1.0 628,983 + MPMX19_03283 0.26 +0.5 628,983 + MPMX19_03283 0.26 -0.3 628,984 - MPMX19_03283 0.26 +0.8 628,984 - MPMX19_03283 0.26 +1.1 628,984 - MPMX19_03283 0.26 -1.4 628,984 - MPMX19_03283 0.26 +1.2 628,984 - MPMX19_03283 0.26 -0.1 629,202 + MPMX19_03283 0.43 +0.3 629,382 + MPMX19_03283 0.56 -0.5 629,382 + MPMX19_03283 0.56 +0.5 629,383 - MPMX19_03283 0.56 -0.6 629,409 + MPMX19_03283 0.58 +0.3 629,409 + MPMX19_03283 0.58 +0.8 629,409 + MPMX19_03283 0.58 +1.3 629,409 + MPMX19_03283 0.58 +1.2 629,409 + MPMX19_03283 0.58 -0.1 629,409 + MPMX19_03283 0.58 -0.9 629,410 - MPMX19_03283 0.58 -0.5 629,410 - MPMX19_03283 0.58 +0.7 629,410 - MPMX19_03283 0.58 +0.4 629,425 + MPMX19_03283 0.60 -1.3 629,425 + MPMX19_03283 0.60 +0.4 629,425 + MPMX19_03283 0.60 -1.5 629,425 + MPMX19_03283 0.60 +1.2 629,425 + MPMX19_03283 0.60 -0.1 629,425 + MPMX19_03283 0.60 -0.1 629,426 - MPMX19_03283 0.60 -0.1 629,426 - MPMX19_03283 0.60 -1.9 629,426 - MPMX19_03283 0.60 -2.5 629,426 - MPMX19_03283 0.60 -2.5 629,426 - MPMX19_03283 0.60 -0.2 629,426 - MPMX19_03283 0.60 +0.3 629,514 + MPMX19_03283 0.66 -0.7 629,514 + MPMX19_03283 0.66 +0.7 629,514 + MPMX19_03283 0.66 +0.1 629,515 - MPMX19_03283 0.66 -0.8 629,515 - MPMX19_03283 0.66 -0.9 629,533 - MPMX19_03283 0.68 +1.5 629,598 + MPMX19_03283 0.73 +0.8 629,598 + MPMX19_03283 0.73 +0.3 629,598 + MPMX19_03283 0.73 -0.0 629,598 + MPMX19_03283 0.73 -0.1 629,598 + MPMX19_03283 0.73 +0.4 629,598 + MPMX19_03283 0.73 +0.5 629,598 + MPMX19_03283 0.73 -1.5 629,598 + MPMX19_03283 0.73 -0.0 629,599 - MPMX19_03283 0.73 +1.2 629,599 - MPMX19_03283 0.73 -0.2 629,599 - MPMX19_03283 0.73 -1.3 629,599 - MPMX19_03283 0.73 +0.1 629,599 - MPMX19_03283 0.73 -2.4 629,599 - MPMX19_03283 0.73 +0.5 629,599 - MPMX19_03283 0.73 -1.5 629,599 - MPMX19_03283 0.73 -0.4 629,599 - MPMX19_03283 0.73 -0.8 629,599 - MPMX19_03283 0.73 -1.9 629,599 - MPMX19_03283 0.73 +0.3 629,599 - MPMX19_03283 0.73 -0.5 629,599 - MPMX19_03283 0.73 +2.1 629,599 - MPMX19_03283 0.73 +0.4 629,599 - MPMX19_03283 0.73 +0.1 629,599 - MPMX19_03283 0.73 +0.5 629,599 - MPMX19_03283 0.73 +0.3 629,599 - MPMX19_03283 0.73 +0.5 629,599 - MPMX19_03283 0.73 +0.3 629,599 - MPMX19_03283 0.73 +0.5 629,599 - MPMX19_03283 0.73 -0.8 629,599 - MPMX19_03283 0.73 +0.5 629,599 - MPMX19_03283 0.73 -0.9 629,796 + MPMX19_03283 0.88 +1.0 629,796 + MPMX19_03283 0.88 +0.7 629,796 + MPMX19_03283 0.88 -2.2 629,797 - MPMX19_03283 0.88 +0.5 629,803 + MPMX19_03283 0.88 +0.7 629,803 + MPMX19_03283 0.88 +1.0 629,803 + MPMX19_03283 0.88 -0.3 629,803 + MPMX19_03283 0.88 -0.9 629,804 - MPMX19_03283 0.88 -0.2 629,804 - MPMX19_03283 0.88 -1.3 629,804 - MPMX19_03283 0.88 +0.8 629,804 - MPMX19_03283 0.88 +0.3 629,804 - MPMX19_03283 0.88 -0.3 629,804 - MPMX19_03283 0.88 -0.8 629,804 - MPMX19_03283 0.88 +0.1 629,804 - MPMX19_03283 0.88 -0.0 629,827 - -1.6 629,827 - +0.3 629,827 - -0.9 629,832 + +0.7 629,833 - +0.4 629,833 - -0.0 629,859 + +0.2 629,859 + -0.1 629,859 + -0.2 629,859 + -0.5 629,859 + +0.2 629,859 + -0.8 629,859 + -0.0 629,859 + -0.8 629,860 - -0.8 629,860 - -0.6 629,860 - -1.1 629,860 - -0.2 629,860 - +0.1 629,860 - -0.3 629,860 - -0.0 629,860 - -0.0 629,860 - +0.4 630,068 + +1.4 630,078 - -1.5 630,107 + -0.6 630,107 + -0.3 630,107 + -1.3 630,438 - MPMX19_03284 0.41 -0.0 630,473 + MPMX19_03284 0.44 +0.4 630,474 - MPMX19_03284 0.44 +0.2 630,474 - MPMX19_03284 0.44 -0.3 630,474 - MPMX19_03284 0.44 +0.3 630,474 - MPMX19_03284 0.44 -0.5 630,474 - MPMX19_03284 0.44 -0.6 630,474 - MPMX19_03284 0.44 +0.9 630,474 - MPMX19_03284 0.44 -2.8 630,608 + MPMX19_03284 0.57 -0.5 630,608 + MPMX19_03284 0.57 -1.3 630,609 - MPMX19_03284 0.57 -0.3 630,609 - MPMX19_03284 0.57 -1.5 630,609 - MPMX19_03284 0.57 -2.5 630,609 - MPMX19_03284 0.57 +0.4 630,609 - MPMX19_03284 0.57 -0.2 630,609 - MPMX19_03284 0.57 -1.2 630,665 + MPMX19_03284 0.63 -0.0 630,666 - MPMX19_03284 0.63 -0.3 630,851 + MPMX19_03284 0.81 -1.7 630,852 - MPMX19_03284 0.81 -2.3 630,852 - MPMX19_03284 0.81 -1.9 630,852 - MPMX19_03284 0.81 +0.7 630,923 + MPMX19_03284 0.88 -0.3 630,923 + MPMX19_03284 0.88 -0.5 630,923 + MPMX19_03284 0.88 +0.1 630,923 + MPMX19_03284 0.88 -0.4 630,923 + MPMX19_03284 0.88 -0.4 630,923 + MPMX19_03284 0.88 -0.9 630,924 - MPMX19_03284 0.88 -0.0 630,924 - MPMX19_03284 0.88 +0.2 630,924 - MPMX19_03284 0.88 +0.1 630,924 - MPMX19_03284 0.88 +1.5
Or see this region's nucleotide sequence