Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03248 and MPMX19_03249 are separated by 6 nucleotides MPMX19_03249 and MPMX19_03250 are separated by 241 nucleotides
MPMX19_03248: MPMX19_03248 - 3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component, at 588,317 to 589,402
_03248
MPMX19_03249: MPMX19_03249 - Carnitine monooxygenase oxygenase subunit, at 589,409 to 590,644
_03249
MPMX19_03250: MPMX19_03250 - Glycine cleavage system transcriptional activator, at 590,886 to 591,812
_03250
Position (kb) 589
590
591 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 588.660 kb on + strand, within MPMX19_03248 at 588.660 kb on + strand, within MPMX19_03248 at 588.661 kb on - strand, within MPMX19_03248 at 588.735 kb on + strand, within MPMX19_03248 at 588.735 kb on + strand, within MPMX19_03248 at 588.735 kb on + strand, within MPMX19_03248 at 588.736 kb on - strand, within MPMX19_03248 at 588.736 kb on - strand, within MPMX19_03248 at 588.753 kb on + strand, within MPMX19_03248 at 588.753 kb on + strand, within MPMX19_03248 at 588.753 kb on + strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.464 kb on + strand at 589.464 kb on + strand at 589.464 kb on + strand at 589.464 kb on + strand at 589.465 kb on - strand at 589.465 kb on - strand at 589.465 kb on - strand at 589.465 kb on - strand at 589.465 kb on - strand at 589.524 kb on + strand at 589.524 kb on + strand at 589.524 kb on + strand at 589.525 kb on - strand at 589.525 kb on - strand at 589.620 kb on + strand, within MPMX19_03249 at 589.620 kb on + strand, within MPMX19_03249 at 589.621 kb on - strand, within MPMX19_03249 at 589.667 kb on + strand, within MPMX19_03249 at 589.667 kb on + strand, within MPMX19_03249 at 589.668 kb on - strand, within MPMX19_03249 at 589.668 kb on - strand, within MPMX19_03249 at 589.750 kb on - strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 590.040 kb on + strand, within MPMX19_03249 at 590.040 kb on + strand, within MPMX19_03249 at 590.040 kb on + strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.142 kb on + strand, within MPMX19_03249 at 590.142 kb on + strand, within MPMX19_03249 at 590.143 kb on - strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.203 kb on - strand, within MPMX19_03249 at 590.203 kb on - strand, within MPMX19_03249 at 590.203 kb on - strand, within MPMX19_03249 at 590.203 kb on - strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249 at 590.526 kb on + strand at 590.526 kb on + strand at 590.526 kb on + strand at 590.527 kb on - strand at 590.527 kb on - strand at 590.571 kb on + strand at 590.571 kb on + strand at 590.571 kb on + strand at 590.571 kb on + strand at 590.571 kb on + strand at 590.571 kb on + strand at 590.571 kb on + strand at 590.571 kb on + strand at 590.572 kb on - strand at 590.572 kb on - strand at 590.572 kb on - strand at 590.572 kb on - strand at 590.592 kb on + strand at 590.592 kb on + strand at 590.592 kb on + strand at 590.593 kb on - strand at 590.827 kb on + strand at 590.827 kb on + strand at 590.828 kb on - strand at 590.998 kb on + strand, within MPMX19_03250 at 590.998 kb on + strand, within MPMX19_03250 at 591.307 kb on + strand, within MPMX19_03250 at 591.307 kb on + strand, within MPMX19_03250 at 591.307 kb on + strand, within MPMX19_03250 at 591.307 kb on + strand, within MPMX19_03250 at 591.307 kb on + strand, within MPMX19_03250 at 591.308 kb on - strand, within MPMX19_03250 at 591.308 kb on - strand, within MPMX19_03250 at 591.308 kb on - strand, within MPMX19_03250 at 591.308 kb on - strand, within MPMX19_03250 at 591.591 kb on - strand, within MPMX19_03250 at 591.595 kb on + strand, within MPMX19_03250 at 591.595 kb on + strand, within MPMX19_03250 at 591.595 kb on + strand, within MPMX19_03250 at 591.595 kb on + strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 588,660 + MPMX19_03248 0.32 -1.3 588,660 + MPMX19_03248 0.32 -1.4 588,661 - MPMX19_03248 0.32 -1.0 588,735 + MPMX19_03248 0.38 +0.2 588,735 + MPMX19_03248 0.38 -0.4 588,735 + MPMX19_03248 0.38 +1.4 588,736 - MPMX19_03248 0.39 -0.7 588,736 - MPMX19_03248 0.39 -1.3 588,753 + MPMX19_03248 0.40 +1.3 588,753 + MPMX19_03248 0.40 +0.0 588,753 + MPMX19_03248 0.40 -0.5 588,754 - MPMX19_03248 0.40 +0.2 588,754 - MPMX19_03248 0.40 +0.5 588,754 - MPMX19_03248 0.40 -2.0 588,754 - MPMX19_03248 0.40 +0.2 588,754 - MPMX19_03248 0.40 -1.1 588,754 - MPMX19_03248 0.40 +0.8 588,969 + MPMX19_03248 0.60 +1.3 588,969 + MPMX19_03248 0.60 -0.2 588,969 + MPMX19_03248 0.60 -0.9 588,969 + MPMX19_03248 0.60 +0.2 588,969 + MPMX19_03248 0.60 +0.9 588,969 + MPMX19_03248 0.60 -0.5 588,969 + MPMX19_03248 0.60 +0.8 588,969 + MPMX19_03248 0.60 -0.9 588,969 + MPMX19_03248 0.60 +1.2 588,969 + MPMX19_03248 0.60 -2.5 588,969 + MPMX19_03248 0.60 +1.5 588,969 + MPMX19_03248 0.60 -0.0 588,969 + MPMX19_03248 0.60 +0.0 588,970 - MPMX19_03248 0.60 -0.4 588,970 - MPMX19_03248 0.60 -2.2 588,970 - MPMX19_03248 0.60 +0.4 588,970 - MPMX19_03248 0.60 -0.7 588,970 - MPMX19_03248 0.60 +0.2 588,970 - MPMX19_03248 0.60 -0.0 588,970 - MPMX19_03248 0.60 +0.2 588,970 - MPMX19_03248 0.60 +1.0 588,970 - MPMX19_03248 0.60 +0.7 588,970 - MPMX19_03248 0.60 +0.3 588,970 - MPMX19_03248 0.60 +0.1 588,970 - MPMX19_03248 0.60 -2.0 589,023 + MPMX19_03248 0.65 -0.7 589,023 + MPMX19_03248 0.65 +0.2 589,023 + MPMX19_03248 0.65 -0.6 589,023 + MPMX19_03248 0.65 -2.3 589,023 + MPMX19_03248 0.65 -1.5 589,023 + MPMX19_03248 0.65 -0.8 589,023 + MPMX19_03248 0.65 +1.1 589,023 + MPMX19_03248 0.65 +0.5 589,023 + MPMX19_03248 0.65 -0.5 589,023 + MPMX19_03248 0.65 +0.1 589,023 + MPMX19_03248 0.65 -0.6 589,023 + MPMX19_03248 0.65 +0.7 589,024 - MPMX19_03248 0.65 -1.8 589,024 - MPMX19_03248 0.65 -1.0 589,024 - MPMX19_03248 0.65 -0.9 589,024 - MPMX19_03248 0.65 -0.8 589,024 - MPMX19_03248 0.65 -1.5 589,024 - MPMX19_03248 0.65 +0.1 589,024 - MPMX19_03248 0.65 -0.6 589,024 - MPMX19_03248 0.65 -0.8 589,024 - MPMX19_03248 0.65 +0.5 589,024 - MPMX19_03248 0.65 +0.3 589,024 - MPMX19_03248 0.65 -0.2 589,024 - MPMX19_03248 0.65 -1.0 589,194 + MPMX19_03248 0.81 +0.5 589,194 + MPMX19_03248 0.81 -0.3 589,194 + MPMX19_03248 0.81 +0.5 589,194 + MPMX19_03248 0.81 -0.7 589,194 + MPMX19_03248 0.81 +0.2 589,194 + MPMX19_03248 0.81 -0.5 589,194 + MPMX19_03248 0.81 -0.5 589,194 + MPMX19_03248 0.81 +0.5 589,194 + MPMX19_03248 0.81 -0.9 589,194 + MPMX19_03248 0.81 -1.3 589,194 + MPMX19_03248 0.81 -0.8 589,194 + MPMX19_03248 0.81 -1.6 589,194 + MPMX19_03248 0.81 +0.8 589,194 + MPMX19_03248 0.81 +0.4 589,194 + MPMX19_03248 0.81 +0.4 589,195 - MPMX19_03248 0.81 -1.5 589,195 - MPMX19_03248 0.81 -0.0 589,195 - MPMX19_03248 0.81 -0.2 589,195 - MPMX19_03248 0.81 -0.4 589,195 - MPMX19_03248 0.81 -2.6 589,410 + -1.8 589,410 + -0.6 589,410 + +0.7 589,410 + +0.2 589,410 + -0.5 589,410 + +1.3 589,410 + -0.5 589,410 + +0.2 589,410 + -0.5 589,410 + +0.5 589,411 - -0.0 589,411 - -0.6 589,411 - -0.6 589,411 - -0.3 589,411 - -0.1 589,411 - -0.3 589,464 + -1.5 589,464 + +0.9 589,464 + -1.0 589,464 + +1.7 589,465 - +0.5 589,465 - -0.4 589,465 - -0.0 589,465 - +1.2 589,465 - +1.1 589,524 + -0.8 589,524 + -0.5 589,524 + -0.5 589,525 - -0.6 589,525 - -0.7 589,620 + MPMX19_03249 0.17 +0.2 589,620 + MPMX19_03249 0.17 +0.1 589,621 - MPMX19_03249 0.17 +0.0 589,667 + MPMX19_03249 0.21 -1.6 589,667 + MPMX19_03249 0.21 -1.6 589,668 - MPMX19_03249 0.21 +0.5 589,668 - MPMX19_03249 0.21 +0.2 589,750 - MPMX19_03249 0.28 -1.0 589,833 + MPMX19_03249 0.34 +0.4 589,833 + MPMX19_03249 0.34 -0.8 589,833 + MPMX19_03249 0.34 +0.2 589,833 + MPMX19_03249 0.34 -1.0 589,833 + MPMX19_03249 0.34 -0.4 589,833 + MPMX19_03249 0.34 -0.6 589,833 + MPMX19_03249 0.34 +0.2 589,833 + MPMX19_03249 0.34 -2.5 589,833 + MPMX19_03249 0.34 -0.3 589,833 + MPMX19_03249 0.34 +0.2 589,833 + MPMX19_03249 0.34 -0.5 589,834 - MPMX19_03249 0.34 -0.0 589,834 - MPMX19_03249 0.34 -0.0 589,834 - MPMX19_03249 0.34 -1.1 589,834 - MPMX19_03249 0.34 -0.1 589,834 - MPMX19_03249 0.34 +0.2 589,834 - MPMX19_03249 0.34 +1.3 589,834 - MPMX19_03249 0.34 -0.4 589,834 - MPMX19_03249 0.34 -1.3 589,834 - MPMX19_03249 0.34 -0.7 589,834 - MPMX19_03249 0.34 -0.2 589,834 - MPMX19_03249 0.34 -0.3 589,834 - MPMX19_03249 0.34 +0.2 590,040 + MPMX19_03249 0.51 -0.3 590,040 + MPMX19_03249 0.51 +1.3 590,040 + MPMX19_03249 0.51 -0.1 590,041 - MPMX19_03249 0.51 -0.3 590,041 - MPMX19_03249 0.51 -0.5 590,041 - MPMX19_03249 0.51 +0.1 590,041 - MPMX19_03249 0.51 +1.1 590,041 - MPMX19_03249 0.51 +0.4 590,041 - MPMX19_03249 0.51 -0.9 590,041 - MPMX19_03249 0.51 +0.1 590,041 - MPMX19_03249 0.51 +0.2 590,142 + MPMX19_03249 0.59 +0.3 590,142 + MPMX19_03249 0.59 +0.1 590,143 - MPMX19_03249 0.59 +0.2 590,202 + MPMX19_03249 0.64 +0.3 590,202 + MPMX19_03249 0.64 +0.4 590,202 + MPMX19_03249 0.64 +0.3 590,202 + MPMX19_03249 0.64 +0.1 590,202 + MPMX19_03249 0.64 -3.3 590,202 + MPMX19_03249 0.64 +0.7 590,202 + MPMX19_03249 0.64 -0.9 590,202 + MPMX19_03249 0.64 +0.7 590,203 - MPMX19_03249 0.64 -0.7 590,203 - MPMX19_03249 0.64 -0.0 590,203 - MPMX19_03249 0.64 -0.8 590,203 - MPMX19_03249 0.64 -0.5 590,310 + MPMX19_03249 0.73 +0.2 590,310 + MPMX19_03249 0.73 +1.3 590,310 + MPMX19_03249 0.73 +0.7 590,310 + MPMX19_03249 0.73 -0.0 590,310 + MPMX19_03249 0.73 +0.5 590,310 + MPMX19_03249 0.73 -1.8 590,310 + MPMX19_03249 0.73 -0.3 590,310 + MPMX19_03249 0.73 -0.5 590,310 + MPMX19_03249 0.73 -0.4 590,311 - MPMX19_03249 0.73 +0.0 590,311 - MPMX19_03249 0.73 -0.2 590,311 - MPMX19_03249 0.73 -0.2 590,311 - MPMX19_03249 0.73 +0.4 590,311 - MPMX19_03249 0.73 -1.2 590,526 + +0.7 590,526 + -0.1 590,526 + +0.3 590,527 - +0.4 590,527 - +1.1 590,571 + -0.4 590,571 + +1.2 590,571 + -0.6 590,571 + +0.4 590,571 + -0.5 590,571 + -0.8 590,571 + +0.4 590,571 + +1.4 590,572 - -0.4 590,572 - +1.1 590,572 - -0.2 590,572 - -2.3 590,592 + +0.1 590,592 + -0.2 590,592 + -1.9 590,593 - +0.9 590,827 + +0.1 590,827 + +1.3 590,828 - -0.9 590,998 + MPMX19_03250 0.12 +0.4 590,998 + MPMX19_03250 0.12 -0.8 591,307 + MPMX19_03250 0.45 -1.4 591,307 + MPMX19_03250 0.45 -1.0 591,307 + MPMX19_03250 0.45 -1.8 591,307 + MPMX19_03250 0.45 -0.6 591,307 + MPMX19_03250 0.45 -0.6 591,308 - MPMX19_03250 0.46 +1.4 591,308 - MPMX19_03250 0.46 +0.9 591,308 - MPMX19_03250 0.46 -0.2 591,308 - MPMX19_03250 0.46 -0.6 591,591 - MPMX19_03250 0.76 +0.0 591,595 + MPMX19_03250 0.76 -1.0 591,595 + MPMX19_03250 0.76 -0.2 591,595 + MPMX19_03250 0.76 -0.5 591,595 + MPMX19_03250 0.76 +0.5 591,596 - MPMX19_03250 0.77 -0.8 591,596 - MPMX19_03250 0.77 -0.3 591,596 - MPMX19_03250 0.77 +0.4 591,596 - MPMX19_03250 0.77 +0.5 591,596 - MPMX19_03250 0.77 +0.9 591,596 - MPMX19_03250 0.77 -0.0 591,596 - MPMX19_03250 0.77 +0.1
Or see this region's nucleotide sequence