Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03142 and MPMX19_03143 are separated by 425 nucleotides MPMX19_03143 and MPMX19_03144 are separated by 104 nucleotides MPMX19_03144 and MPMX19_03145 are separated by 44 nucleotides MPMX19_03145 and MPMX19_03146 overlap by 4 nucleotides
MPMX19_03142: MPMX19_03142 - Putative thiamine pyrophosphate-containing protein YdaP, at 430,964 to 432,766
_03142
MPMX19_03143: MPMX19_03143 - Polar-differentiation response regulator DivK, at 433,192 to 433,578
_03143
MPMX19_03144: MPMX19_03144 - UDP-N-acetylglucosamine 4-epimerase, at 433,683 to 434,624
_03144
MPMX19_03145: MPMX19_03145 - hypothetical protein, at 434,669 to 435,553
_03145
MPMX19_03146: MPMX19_03146 - hypothetical protein, at 435,550 to 437,832
_03146
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.810 kb on - strand at 432.810 kb on - strand at 432.810 kb on - strand at 432.810 kb on - strand at 432.919 kb on - strand at 432.919 kb on - strand at 433.024 kb on - strand at 433.031 kb on + strand at 433.067 kb on + strand at 433.401 kb on + strand, within MPMX19_03143 at 433.617 kb on + strand at 433.617 kb on + strand at 433.642 kb on + strand at 433.642 kb on + strand at 433.643 kb on - strand at 433.643 kb on - strand at 433.692 kb on + strand at 433.692 kb on + strand at 433.692 kb on + strand at 433.693 kb on - strand at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.124 kb on + strand, within MPMX19_03144 at 434.124 kb on + strand, within MPMX19_03144 at 434.124 kb on + strand, within MPMX19_03144 at 434.124 kb on + strand, within MPMX19_03144 at 434.125 kb on - strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.247 kb on + strand, within MPMX19_03144 at 434.247 kb on + strand, within MPMX19_03144 at 434.248 kb on - strand, within MPMX19_03144 at 434.248 kb on - strand, within MPMX19_03144 at 434.248 kb on - strand, within MPMX19_03144 at 434.344 kb on + strand, within MPMX19_03144 at 434.344 kb on + strand, within MPMX19_03144 at 434.361 kb on + strand, within MPMX19_03144 at 434.362 kb on - strand, within MPMX19_03144 at 434.362 kb on - strand, within MPMX19_03144 at 434.362 kb on - strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.407 kb on - strand, within MPMX19_03144 at 434.407 kb on - strand, within MPMX19_03144 at 434.407 kb on - strand, within MPMX19_03144 at 434.407 kb on - strand, within MPMX19_03144 at 434.801 kb on + strand, within MPMX19_03145 at 434.801 kb on + strand, within MPMX19_03145 at 434.801 kb on + strand, within MPMX19_03145 at 434.801 kb on + strand, within MPMX19_03145 at 434.801 kb on + strand, within MPMX19_03145 at 434.802 kb on - strand, within MPMX19_03145 at 434.802 kb on - strand, within MPMX19_03145 at 434.802 kb on - strand, within MPMX19_03145 at 434.802 kb on - strand, within MPMX19_03145 at 434.802 kb on - strand, within MPMX19_03145 at 434.802 kb on - strand, within MPMX19_03145 at 434.804 kb on + strand, within MPMX19_03145 at 434.804 kb on + strand, within MPMX19_03145 at 434.804 kb on + strand, within MPMX19_03145 at 434.804 kb on + strand, within MPMX19_03145 at 434.805 kb on - strand, within MPMX19_03145 at 434.805 kb on - strand, within MPMX19_03145 at 434.805 kb on - strand, within MPMX19_03145 at 434.918 kb on + strand, within MPMX19_03145 at 434.918 kb on + strand, within MPMX19_03145 at 434.918 kb on + strand, within MPMX19_03145 at 434.919 kb on - strand, within MPMX19_03145 at 434.919 kb on - strand, within MPMX19_03145 at 434.919 kb on - strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.249 kb on - strand, within MPMX19_03145 at 435.249 kb on - strand, within MPMX19_03145 at 435.305 kb on + strand, within MPMX19_03145 at 435.305 kb on + strand, within MPMX19_03145 at 435.305 kb on + strand, within MPMX19_03145 at 435.305 kb on + strand, within MPMX19_03145 at 435.305 kb on + strand, within MPMX19_03145 at 435.305 kb on + strand, within MPMX19_03145 at 435.306 kb on - strand, within MPMX19_03145 at 435.306 kb on - strand, within MPMX19_03145 at 435.306 kb on - strand, within MPMX19_03145 at 435.431 kb on + strand, within MPMX19_03145 at 435.431 kb on + strand, within MPMX19_03145 at 435.432 kb on - strand, within MPMX19_03145 at 435.432 kb on - strand, within MPMX19_03145 at 435.432 kb on - strand, within MPMX19_03145 at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.471 kb on - strand at 435.471 kb on - strand at 435.471 kb on - strand at 435.471 kb on - strand at 435.471 kb on - strand at 435.471 kb on - strand at 435.471 kb on - strand at 435.503 kb on + strand at 435.503 kb on + strand at 435.503 kb on + strand at 435.503 kb on + strand at 435.504 kb on - strand at 435.504 kb on - strand at 435.504 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 432,734 + -0.3 432,734 + -0.2 432,734 + -0.2 432,734 + +0.1 432,734 + -0.5 432,734 + -0.4 432,734 + -1.9 432,734 + -0.8 432,734 + -0.2 432,734 + -0.8 432,734 + -0.8 432,735 - +1.6 432,735 - -0.8 432,735 - -1.0 432,735 - +0.1 432,735 - +1.1 432,735 - -1.4 432,735 - +0.3 432,735 - -0.2 432,735 - -1.0 432,735 - +0.6 432,809 + -0.9 432,809 + -1.4 432,809 + -0.4 432,809 + +0.2 432,809 + -0.9 432,809 + -0.8 432,809 + -1.8 432,809 + -0.6 432,809 + -0.7 432,809 + -0.8 432,810 - +0.2 432,810 - -1.0 432,810 - -1.4 432,810 - +0.1 432,919 - +0.5 432,919 - +0.8 433,024 - -0.4 433,031 + -2.8 433,067 + -0.2 433,401 + MPMX19_03143 0.54 +1.1 433,617 + +0.1 433,617 + -1.2 433,642 + +0.7 433,642 + +1.3 433,643 - -0.1 433,643 - +0.6 433,692 + -0.1 433,692 + -1.6 433,692 + +1.2 433,693 - -2.6 434,043 + MPMX19_03144 0.38 -0.8 434,043 + MPMX19_03144 0.38 -0.2 434,043 + MPMX19_03144 0.38 -0.5 434,043 + MPMX19_03144 0.38 +0.6 434,043 + MPMX19_03144 0.38 +1.1 434,043 + MPMX19_03144 0.38 -0.2 434,043 + MPMX19_03144 0.38 -0.5 434,043 + MPMX19_03144 0.38 +0.2 434,043 + MPMX19_03144 0.38 +1.3 434,043 + MPMX19_03144 0.38 +0.6 434,043 + MPMX19_03144 0.38 +0.2 434,043 + MPMX19_03144 0.38 -0.0 434,043 + MPMX19_03144 0.38 -0.9 434,043 + MPMX19_03144 0.38 -0.9 434,043 + MPMX19_03144 0.38 -0.6 434,043 + MPMX19_03144 0.38 -2.2 434,043 + MPMX19_03144 0.38 +0.6 434,043 + MPMX19_03144 0.38 +1.2 434,043 + MPMX19_03144 0.38 -0.8 434,043 + MPMX19_03144 0.38 -1.3 434,044 - MPMX19_03144 0.38 +0.3 434,044 - MPMX19_03144 0.38 -0.8 434,044 - MPMX19_03144 0.38 -1.8 434,044 - MPMX19_03144 0.38 -0.3 434,044 - MPMX19_03144 0.38 -0.4 434,044 - MPMX19_03144 0.38 -0.9 434,044 - MPMX19_03144 0.38 +0.3 434,044 - MPMX19_03144 0.38 +2.0 434,044 - MPMX19_03144 0.38 -0.6 434,044 - MPMX19_03144 0.38 -0.2 434,044 - MPMX19_03144 0.38 -0.1 434,044 - MPMX19_03144 0.38 -0.6 434,044 - MPMX19_03144 0.38 -1.0 434,044 - MPMX19_03144 0.38 -1.8 434,044 - MPMX19_03144 0.38 -1.1 434,044 - MPMX19_03144 0.38 -0.0 434,124 + MPMX19_03144 0.47 +2.6 434,124 + MPMX19_03144 0.47 +0.6 434,124 + MPMX19_03144 0.47 -0.5 434,124 + MPMX19_03144 0.47 -0.2 434,125 - MPMX19_03144 0.47 -0.4 434,217 + MPMX19_03144 0.57 -0.0 434,217 + MPMX19_03144 0.57 -0.6 434,217 + MPMX19_03144 0.57 -0.8 434,217 + MPMX19_03144 0.57 -0.2 434,217 + MPMX19_03144 0.57 +0.4 434,217 + MPMX19_03144 0.57 -0.9 434,217 + MPMX19_03144 0.57 -1.1 434,217 + MPMX19_03144 0.57 -0.3 434,217 + MPMX19_03144 0.57 -0.1 434,217 + MPMX19_03144 0.57 -0.9 434,218 - MPMX19_03144 0.57 -0.0 434,218 - MPMX19_03144 0.57 -0.0 434,218 - MPMX19_03144 0.57 +0.9 434,218 - MPMX19_03144 0.57 -0.9 434,218 - MPMX19_03144 0.57 -0.6 434,218 - MPMX19_03144 0.57 -2.1 434,218 - MPMX19_03144 0.57 +0.6 434,218 - MPMX19_03144 0.57 -0.6 434,218 - MPMX19_03144 0.57 -1.6 434,218 - MPMX19_03144 0.57 -0.0 434,247 + MPMX19_03144 0.60 -1.2 434,247 + MPMX19_03144 0.60 -0.4 434,248 - MPMX19_03144 0.60 +0.6 434,248 - MPMX19_03144 0.60 -1.0 434,248 - MPMX19_03144 0.60 +0.1 434,344 + MPMX19_03144 0.70 -0.9 434,344 + MPMX19_03144 0.70 -1.0 434,361 + MPMX19_03144 0.72 +1.4 434,362 - MPMX19_03144 0.72 -0.5 434,362 - MPMX19_03144 0.72 -1.6 434,362 - MPMX19_03144 0.72 -1.4 434,406 + MPMX19_03144 0.77 -0.6 434,406 + MPMX19_03144 0.77 +0.4 434,406 + MPMX19_03144 0.77 +0.1 434,406 + MPMX19_03144 0.77 +1.0 434,406 + MPMX19_03144 0.77 -0.6 434,406 + MPMX19_03144 0.77 -1.3 434,406 + MPMX19_03144 0.77 +1.6 434,406 + MPMX19_03144 0.77 -1.0 434,406 + MPMX19_03144 0.77 -1.4 434,406 + MPMX19_03144 0.77 +0.1 434,406 + MPMX19_03144 0.77 -0.3 434,406 + MPMX19_03144 0.77 +1.4 434,406 + MPMX19_03144 0.77 -1.8 434,406 + MPMX19_03144 0.77 +0.8 434,407 - MPMX19_03144 0.77 +0.6 434,407 - MPMX19_03144 0.77 -0.2 434,407 - MPMX19_03144 0.77 -1.1 434,407 - MPMX19_03144 0.77 +1.2 434,801 + MPMX19_03145 0.15 -1.0 434,801 + MPMX19_03145 0.15 -0.0 434,801 + MPMX19_03145 0.15 -0.9 434,801 + MPMX19_03145 0.15 -0.8 434,801 + MPMX19_03145 0.15 -0.4 434,802 - MPMX19_03145 0.15 -0.0 434,802 - MPMX19_03145 0.15 -0.0 434,802 - MPMX19_03145 0.15 -0.5 434,802 - MPMX19_03145 0.15 -0.1 434,802 - MPMX19_03145 0.15 +0.0 434,802 - MPMX19_03145 0.15 +0.2 434,804 + MPMX19_03145 0.15 +1.0 434,804 + MPMX19_03145 0.15 -0.9 434,804 + MPMX19_03145 0.15 -0.7 434,804 + MPMX19_03145 0.15 +0.6 434,805 - MPMX19_03145 0.15 -1.6 434,805 - MPMX19_03145 0.15 +0.8 434,805 - MPMX19_03145 0.15 -0.0 434,918 + MPMX19_03145 0.28 +1.1 434,918 + MPMX19_03145 0.28 -0.1 434,918 + MPMX19_03145 0.28 -1.3 434,919 - MPMX19_03145 0.28 -1.2 434,919 - MPMX19_03145 0.28 -0.9 434,919 - MPMX19_03145 0.28 +0.3 435,020 + MPMX19_03145 0.40 -3.0 435,020 + MPMX19_03145 0.40 -0.5 435,020 + MPMX19_03145 0.40 -0.7 435,020 + MPMX19_03145 0.40 +0.0 435,020 + MPMX19_03145 0.40 -1.4 435,020 + MPMX19_03145 0.40 +0.1 435,020 + MPMX19_03145 0.40 -1.0 435,020 + MPMX19_03145 0.40 -1.6 435,020 + MPMX19_03145 0.40 -1.9 435,020 + MPMX19_03145 0.40 -1.0 435,020 + MPMX19_03145 0.40 +0.1 435,020 + MPMX19_03145 0.40 +0.5 435,020 + MPMX19_03145 0.40 -0.4 435,020 + MPMX19_03145 0.40 -0.9 435,020 + MPMX19_03145 0.40 -0.4 435,020 + MPMX19_03145 0.40 -0.0 435,020 + MPMX19_03145 0.40 -0.9 435,020 + MPMX19_03145 0.40 -0.2 435,021 - MPMX19_03145 0.40 -0.5 435,021 - MPMX19_03145 0.40 -0.9 435,021 - MPMX19_03145 0.40 +0.1 435,021 - MPMX19_03145 0.40 -0.4 435,021 - MPMX19_03145 0.40 -0.1 435,021 - MPMX19_03145 0.40 -1.4 435,021 - MPMX19_03145 0.40 +0.6 435,021 - MPMX19_03145 0.40 -0.2 435,021 - MPMX19_03145 0.40 +0.8 435,021 - MPMX19_03145 0.40 -1.2 435,021 - MPMX19_03145 0.40 +0.0 435,021 - MPMX19_03145 0.40 -1.4 435,249 - MPMX19_03145 0.66 +1.3 435,249 - MPMX19_03145 0.66 +0.6 435,305 + MPMX19_03145 0.72 -1.2 435,305 + MPMX19_03145 0.72 -0.2 435,305 + MPMX19_03145 0.72 -0.7 435,305 + MPMX19_03145 0.72 -2.3 435,305 + MPMX19_03145 0.72 -0.3 435,305 + MPMX19_03145 0.72 -2.1 435,306 - MPMX19_03145 0.72 -0.2 435,306 - MPMX19_03145 0.72 -1.2 435,306 - MPMX19_03145 0.72 -3.0 435,431 + MPMX19_03145 0.86 -1.4 435,431 + MPMX19_03145 0.86 +1.0 435,432 - MPMX19_03145 0.86 -2.2 435,432 - MPMX19_03145 0.86 -1.0 435,432 - MPMX19_03145 0.86 +0.6 435,470 + -0.0 435,470 + +0.6 435,470 + -0.9 435,470 + -0.4 435,470 + -0.3 435,470 + -0.6 435,470 + -1.0 435,470 + -1.2 435,470 + -0.7 435,470 + -2.4 435,471 - +1.0 435,471 - +0.6 435,471 - +1.0 435,471 - -0.0 435,471 - +0.6 435,471 - -0.3 435,471 - -1.6 435,503 + -3.2 435,503 + -0.7 435,503 + -1.8 435,503 + -1.6 435,504 - +0.6 435,504 - -0.8 435,504 - -0.0
Or see this region's nucleotide sequence