Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02979 and MPMX19_02980 overlap by 4 nucleotides MPMX19_02980 and MPMX19_02981 overlap by 20 nucleotides MPMX19_02981 and MPMX19_02982 are separated by 456 nucleotides
MPMX19_02979: MPMX19_02979 - Hydrogen cyanide synthase subunit HcnB, at 240,940 to 242,397
_02979
MPMX19_02980: MPMX19_02980 - Hydrogen cyanide synthase subunit HcnA, at 242,394 to 242,696
_02980
MPMX19_02981: MPMX19_02981 - Hydrogen cyanide synthase subunit HcnC, at 242,677 to 243,810
_02981
MPMX19_02982: MPMX19_02982 - Octopine catabolism/uptake operon regulatory protein OccR, at 244,267 to 245,220
_02982
Position (kb) 242
243
244 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 241.856 kb on + strand, within MPMX19_02979 at 241.856 kb on + strand, within MPMX19_02979 at 241.856 kb on + strand, within MPMX19_02979 at 241.856 kb on + strand, within MPMX19_02979 at 241.856 kb on + strand, within MPMX19_02979 at 241.857 kb on - strand, within MPMX19_02979 at 241.857 kb on - strand, within MPMX19_02979 at 242.259 kb on - strand at 242.259 kb on - strand at 242.375 kb on - strand at 242.506 kb on + strand, within MPMX19_02980 at 242.507 kb on - strand, within MPMX19_02980 at 242.507 kb on - strand, within MPMX19_02980 at 242.528 kb on - strand, within MPMX19_02980 at 242.846 kb on + strand, within MPMX19_02981 at 242.846 kb on + strand, within MPMX19_02981 at 242.847 kb on - strand, within MPMX19_02981 at 243.044 kb on + strand, within MPMX19_02981 at 243.044 kb on + strand, within MPMX19_02981 at 243.045 kb on - strand, within MPMX19_02981 at 243.045 kb on - strand, within MPMX19_02981 at 243.045 kb on - strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.420 kb on - strand, within MPMX19_02981 at 243.611 kb on + strand, within MPMX19_02981 at 243.612 kb on - strand, within MPMX19_02981 at 243.783 kb on - strand at 243.783 kb on - strand at 243.783 kb on - strand at 243.783 kb on - strand at 243.880 kb on + strand at 243.881 kb on - strand at 243.881 kb on - strand at 243.885 kb on + strand at 243.885 kb on + strand at 243.885 kb on + strand at 243.886 kb on - strand at 243.933 kb on + strand at 243.947 kb on - strand at 243.947 kb on - strand at 243.947 kb on - strand at 243.948 kb on + strand at 243.981 kb on - strand at 243.981 kb on - strand at 243.981 kb on - strand at 243.981 kb on - strand at 243.992 kb on + strand at 243.992 kb on + strand at 243.992 kb on + strand at 243.993 kb on - strand at 244.104 kb on - strand at 244.390 kb on + strand, within MPMX19_02982 at 244.390 kb on + strand, within MPMX19_02982 at 244.390 kb on + strand, within MPMX19_02982 at 244.390 kb on + strand, within MPMX19_02982 at 244.391 kb on - strand, within MPMX19_02982 at 244.391 kb on - strand, within MPMX19_02982 at 244.391 kb on - strand, within MPMX19_02982 at 244.462 kb on + strand, within MPMX19_02982 at 244.462 kb on + strand, within MPMX19_02982 at 244.462 kb on + strand, within MPMX19_02982 at 244.462 kb on + strand, within MPMX19_02982 at 244.463 kb on - strand, within MPMX19_02982 at 244.463 kb on - strand, within MPMX19_02982 at 244.463 kb on - strand, within MPMX19_02982 at 244.594 kb on + strand, within MPMX19_02982
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 241,856 + MPMX19_02979 0.63 -0.7 241,856 + MPMX19_02979 0.63 +0.2 241,856 + MPMX19_02979 0.63 -1.4 241,856 + MPMX19_02979 0.63 +0.0 241,856 + MPMX19_02979 0.63 +0.3 241,857 - MPMX19_02979 0.63 -2.0 241,857 - MPMX19_02979 0.63 -1.6 242,259 - +0.5 242,259 - -1.1 242,375 - +0.3 242,506 + MPMX19_02980 0.37 -2.2 242,507 - MPMX19_02980 0.37 -3.0 242,507 - MPMX19_02980 0.37 +0.3 242,528 - MPMX19_02980 0.44 -2.6 242,846 + MPMX19_02981 0.15 -1.1 242,846 + MPMX19_02981 0.15 -0.4 242,847 - MPMX19_02981 0.15 -1.7 243,044 + MPMX19_02981 0.32 -1.5 243,044 + MPMX19_02981 0.32 -1.4 243,045 - MPMX19_02981 0.32 -1.4 243,045 - MPMX19_02981 0.32 -4.2 243,045 - MPMX19_02981 0.32 -1.7 243,347 + MPMX19_02981 0.59 -2.1 243,347 + MPMX19_02981 0.59 -1.0 243,347 + MPMX19_02981 0.59 -1.7 243,347 + MPMX19_02981 0.59 -0.9 243,347 + MPMX19_02981 0.59 -1.1 243,347 + MPMX19_02981 0.59 +0.5 243,347 + MPMX19_02981 0.59 -2.7 243,347 + MPMX19_02981 0.59 -2.2 243,348 - MPMX19_02981 0.59 -1.3 243,348 - MPMX19_02981 0.59 -1.0 243,348 - MPMX19_02981 0.59 -1.3 243,348 - MPMX19_02981 0.59 -1.0 243,348 - MPMX19_02981 0.59 -0.7 243,348 - MPMX19_02981 0.59 -1.6 243,348 - MPMX19_02981 0.59 -1.5 243,420 - MPMX19_02981 0.66 -0.7 243,611 + MPMX19_02981 0.82 -1.7 243,612 - MPMX19_02981 0.82 -1.3 243,783 - -0.2 243,783 - -0.7 243,783 - -0.9 243,783 - -0.3 243,880 + -2.4 243,881 - -0.7 243,881 - -0.1 243,885 + -1.3 243,885 + +0.0 243,885 + -1.9 243,886 - -1.0 243,933 + -0.7 243,947 - -0.3 243,947 - -0.8 243,947 - -1.4 243,948 + -3.6 243,981 - +0.2 243,981 - +0.6 243,981 - +0.0 243,981 - -0.3 243,992 + -2.1 243,992 + -1.6 243,992 + -1.5 243,993 - +0.0 244,104 - +0.0 244,390 + MPMX19_02982 0.13 -2.2 244,390 + MPMX19_02982 0.13 +0.4 244,390 + MPMX19_02982 0.13 +0.0 244,390 + MPMX19_02982 0.13 -0.6 244,391 - MPMX19_02982 0.13 -1.4 244,391 - MPMX19_02982 0.13 +0.4 244,391 - MPMX19_02982 0.13 -0.7 244,462 + MPMX19_02982 0.20 +0.2 244,462 + MPMX19_02982 0.20 +0.5 244,462 + MPMX19_02982 0.20 +0.4 244,462 + MPMX19_02982 0.20 +0.8 244,463 - MPMX19_02982 0.21 +1.0 244,463 - MPMX19_02982 0.21 -0.2 244,463 - MPMX19_02982 0.21 -0.9 244,594 + MPMX19_02982 0.34 -0.3
Or see this region's nucleotide sequence