Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02879 and MPMX19_02880 are separated by 167 nucleotides MPMX19_02880 and MPMX19_02881 are separated by 13 nucleotides MPMX19_02881 and MPMX19_02882 are separated by 109 nucleotides
MPMX19_02879: MPMX19_02879 - Pyridoxal 4-dehydrogenase, at 129,398 to 130,384
_02879
MPMX19_02880: MPMX19_02880 - hypothetical protein, at 130,552 to 131,658
_02880
MPMX19_02881: MPMX19_02881 - hypothetical protein, at 131,672 to 132,157
_02881
MPMX19_02882: MPMX19_02882 - Threonine/homoserine exporter RhtA, at 132,267 to 133,157
_02882
Position (kb) 130
131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 129.696 kb on + strand, within MPMX19_02879 at 129.696 kb on + strand, within MPMX19_02879 at 129.696 kb on + strand, within MPMX19_02879 at 129.696 kb on + strand, within MPMX19_02879 at 129.696 kb on + strand, within MPMX19_02879 at 129.696 kb on + strand, within MPMX19_02879 at 129.696 kb on + strand, within MPMX19_02879 at 129.697 kb on - strand, within MPMX19_02879 at 129.697 kb on - strand, within MPMX19_02879 at 129.697 kb on - strand, within MPMX19_02879 at 129.697 kb on - strand, within MPMX19_02879 at 129.697 kb on - strand, within MPMX19_02879 at 129.697 kb on - strand, within MPMX19_02879 at 129.780 kb on + strand, within MPMX19_02879 at 129.781 kb on - strand, within MPMX19_02879 at 129.781 kb on - strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.983 kb on - strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 130.059 kb on + strand, within MPMX19_02879 at 130.059 kb on + strand, within MPMX19_02879 at 130.060 kb on - strand, within MPMX19_02879 at 130.066 kb on - strand, within MPMX19_02879 at 130.227 kb on + strand, within MPMX19_02879 at 130.228 kb on - strand, within MPMX19_02879 at 130.503 kb on + strand at 130.503 kb on + strand at 130.503 kb on + strand at 130.503 kb on + strand at 130.503 kb on + strand at 130.504 kb on - strand at 130.504 kb on - strand at 130.504 kb on - strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 131.638 kb on + strand at 131.673 kb on + strand at 131.778 kb on + strand, within MPMX19_02881 at 131.778 kb on + strand, within MPMX19_02881 at 131.779 kb on - strand, within MPMX19_02881 at 131.779 kb on - strand, within MPMX19_02881 at 131.779 kb on - strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 132.200 kb on + strand at 132.227 kb on + strand at 132.227 kb on + strand at 132.228 kb on - strand at 132.228 kb on - strand at 132.250 kb on + strand at 132.250 kb on + strand at 132.251 kb on - strand at 132.251 kb on - strand at 132.251 kb on - strand at 132.266 kb on + strand at 132.266 kb on + strand at 132.267 kb on - strand at 132.267 kb on - strand at 132.267 kb on - strand at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.361 kb on - strand, within MPMX19_02882 at 132.361 kb on - strand, within MPMX19_02882 at 132.361 kb on - strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.517 kb on - strand, within MPMX19_02882 at 132.553 kb on - strand, within MPMX19_02882
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 129,696 + MPMX19_02879 0.30 +0.6 129,696 + MPMX19_02879 0.30 +1.6 129,696 + MPMX19_02879 0.30 +0.0 129,696 + MPMX19_02879 0.30 -0.0 129,696 + MPMX19_02879 0.30 -1.3 129,696 + MPMX19_02879 0.30 -1.0 129,696 + MPMX19_02879 0.30 -0.7 129,697 - MPMX19_02879 0.30 -0.9 129,697 - MPMX19_02879 0.30 -0.2 129,697 - MPMX19_02879 0.30 +0.1 129,697 - MPMX19_02879 0.30 -0.4 129,697 - MPMX19_02879 0.30 +1.6 129,697 - MPMX19_02879 0.30 -0.7 129,780 + MPMX19_02879 0.39 +0.6 129,781 - MPMX19_02879 0.39 -2.3 129,781 - MPMX19_02879 0.39 -0.2 129,800 + MPMX19_02879 0.41 +0.3 129,800 + MPMX19_02879 0.41 +0.1 129,800 + MPMX19_02879 0.41 -1.0 129,800 + MPMX19_02879 0.41 -0.4 129,800 + MPMX19_02879 0.41 +1.3 129,800 + MPMX19_02879 0.41 +0.6 129,800 + MPMX19_02879 0.41 +0.6 129,800 + MPMX19_02879 0.41 +0.9 129,800 + MPMX19_02879 0.41 +0.4 129,800 + MPMX19_02879 0.41 -0.2 129,800 + MPMX19_02879 0.41 -0.6 129,800 + MPMX19_02879 0.41 -0.2 129,800 + MPMX19_02879 0.41 +0.6 129,801 - MPMX19_02879 0.41 -0.6 129,801 - MPMX19_02879 0.41 -0.5 129,801 - MPMX19_02879 0.41 -1.0 129,801 - MPMX19_02879 0.41 +0.6 129,801 - MPMX19_02879 0.41 -0.7 129,801 - MPMX19_02879 0.41 -2.0 129,801 - MPMX19_02879 0.41 -0.4 129,801 - MPMX19_02879 0.41 -0.7 129,801 - MPMX19_02879 0.41 -1.5 129,801 - MPMX19_02879 0.41 -1.5 129,983 - MPMX19_02879 0.59 -0.4 129,984 + MPMX19_02879 0.59 +0.7 129,984 + MPMX19_02879 0.59 +0.6 129,984 + MPMX19_02879 0.59 -0.8 129,984 + MPMX19_02879 0.59 -1.2 129,984 + MPMX19_02879 0.59 -1.4 129,984 + MPMX19_02879 0.59 +0.2 129,984 + MPMX19_02879 0.59 +0.6 129,984 + MPMX19_02879 0.59 -1.2 129,984 + MPMX19_02879 0.59 -0.6 129,984 + MPMX19_02879 0.59 -1.7 129,984 + MPMX19_02879 0.59 -0.4 129,984 + MPMX19_02879 0.59 +0.0 129,984 + MPMX19_02879 0.59 -1.6 129,984 + MPMX19_02879 0.59 -0.8 129,984 + MPMX19_02879 0.59 +0.9 129,985 - MPMX19_02879 0.59 +1.4 129,985 - MPMX19_02879 0.59 +1.4 129,985 - MPMX19_02879 0.59 +0.4 129,985 - MPMX19_02879 0.59 +0.3 129,985 - MPMX19_02879 0.59 +1.1 129,985 - MPMX19_02879 0.59 -1.1 129,985 - MPMX19_02879 0.59 -0.9 129,985 - MPMX19_02879 0.59 -0.4 129,985 - MPMX19_02879 0.59 +1.3 129,985 - MPMX19_02879 0.59 -0.5 129,985 - MPMX19_02879 0.59 -0.2 130,059 + MPMX19_02879 0.67 +0.1 130,059 + MPMX19_02879 0.67 -0.7 130,060 - MPMX19_02879 0.67 +1.0 130,066 - MPMX19_02879 0.68 -1.1 130,227 + MPMX19_02879 0.84 -0.6 130,228 - MPMX19_02879 0.84 +0.6 130,503 + +1.3 130,503 + -0.8 130,503 + +0.8 130,503 + -0.3 130,503 + -0.3 130,504 - -0.2 130,504 - -1.2 130,504 - -0.1 130,549 + -0.9 130,549 + -1.0 130,549 + -0.6 130,549 + -0.4 130,549 + -0.0 130,549 + -0.1 130,549 + -1.3 130,549 + -0.3 130,549 + -0.9 130,549 + +0.2 130,549 + -1.7 130,549 + -1.5 130,549 + +1.0 130,549 + +0.1 130,549 + +0.2 130,549 + -0.4 130,549 + -0.6 130,549 + -1.2 130,549 + -0.1 130,549 + +0.9 130,549 + -1.7 130,550 - -0.6 130,550 - +0.7 130,550 - +0.0 130,550 - -0.8 130,550 - +0.3 130,550 - -0.3 130,550 - -1.2 130,550 - -1.6 130,550 - -1.7 130,550 - -0.2 130,550 - -0.4 130,550 - -0.1 130,550 - -2.0 130,550 - -0.4 130,550 - -0.5 130,550 - -0.1 130,550 - -0.7 130,550 - +0.6 130,693 + MPMX19_02880 0.13 -1.2 130,693 + MPMX19_02880 0.13 -1.7 130,693 + MPMX19_02880 0.13 -2.6 130,693 + MPMX19_02880 0.13 +0.2 130,693 + MPMX19_02880 0.13 -0.1 130,693 + MPMX19_02880 0.13 +0.0 130,693 + MPMX19_02880 0.13 +0.7 130,693 + MPMX19_02880 0.13 -0.9 130,693 + MPMX19_02880 0.13 +0.6 130,693 + MPMX19_02880 0.13 +1.1 130,693 + MPMX19_02880 0.13 -1.4 130,693 + MPMX19_02880 0.13 +0.6 130,693 + MPMX19_02880 0.13 -0.3 130,694 - MPMX19_02880 0.13 +0.1 130,694 - MPMX19_02880 0.13 -0.7 130,694 - MPMX19_02880 0.13 +0.1 130,694 - MPMX19_02880 0.13 -0.2 130,694 - MPMX19_02880 0.13 -0.1 130,694 - MPMX19_02880 0.13 -0.8 130,694 - MPMX19_02880 0.13 +0.9 130,694 - MPMX19_02880 0.13 +1.0 130,694 - MPMX19_02880 0.13 +1.2 130,694 - MPMX19_02880 0.13 -1.7 130,694 - MPMX19_02880 0.13 +0.1 131,638 + -2.6 131,673 + -0.7 131,778 + MPMX19_02881 0.22 -2.2 131,778 + MPMX19_02881 0.22 +0.2 131,779 - MPMX19_02881 0.22 -0.7 131,779 - MPMX19_02881 0.22 -1.0 131,779 - MPMX19_02881 0.22 -2.9 131,838 + MPMX19_02881 0.34 +0.6 131,838 + MPMX19_02881 0.34 -0.1 131,838 + MPMX19_02881 0.34 -0.5 131,838 + MPMX19_02881 0.34 -1.4 131,839 - MPMX19_02881 0.34 -0.3 131,839 - MPMX19_02881 0.34 -0.7 131,839 - MPMX19_02881 0.34 -0.6 131,839 - MPMX19_02881 0.34 -0.1 131,839 - MPMX19_02881 0.34 +0.4 131,839 - MPMX19_02881 0.34 -1.1 131,839 - MPMX19_02881 0.34 +0.7 132,200 + +2.0 132,227 + +0.0 132,227 + -0.5 132,228 - +0.0 132,228 - -1.1 132,250 + -0.4 132,250 + -1.2 132,251 - +0.4 132,251 - +0.3 132,251 - -0.5 132,266 + +0.5 132,266 + -0.1 132,267 - -1.0 132,267 - +1.0 132,267 - -0.5 132,360 + MPMX19_02882 0.10 -0.9 132,360 + MPMX19_02882 0.10 -1.3 132,360 + MPMX19_02882 0.10 +1.3 132,360 + MPMX19_02882 0.10 +0.4 132,360 + MPMX19_02882 0.10 -0.3 132,360 + MPMX19_02882 0.10 -0.6 132,360 + MPMX19_02882 0.10 -0.4 132,361 - MPMX19_02882 0.11 +0.1 132,361 - MPMX19_02882 0.11 -0.2 132,361 - MPMX19_02882 0.11 +0.0 132,516 + MPMX19_02882 0.28 +0.5 132,516 + MPMX19_02882 0.28 +0.0 132,516 + MPMX19_02882 0.28 +1.0 132,516 + MPMX19_02882 0.28 -0.3 132,516 + MPMX19_02882 0.28 -0.6 132,517 - MPMX19_02882 0.28 +0.2 132,553 - MPMX19_02882 0.32 -0.4
Or see this region's nucleotide sequence