Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02795 and MPMX19_02796 are separated by 8 nucleotides MPMX19_02796 and MPMX19_02797 overlap by 17 nucleotides MPMX19_02797 and MPMX19_02798 are separated by 105 nucleotides
MPMX19_02795: MPMX19_02795 - Homoaconitase large subunit, at 29,866 to 31,122
_02795
MPMX19_02796: MPMX19_02796 - Methanogen homoaconitase small subunit, at 31,131 to 31,694
_02796
MPMX19_02797: MPMX19_02797 - 2,3-dimethylmalate lyase, at 31,678 to 32,538
_02797
MPMX19_02798: MPMX19_02798 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 32,644 to 33,786
_02798
Position (kb) 31
32
33 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 30.748 kb on + strand, within MPMX19_02795 at 30.946 kb on + strand, within MPMX19_02795 at 30.947 kb on - strand, within MPMX19_02795 at 30.947 kb on - strand, within MPMX19_02795 at 31.048 kb on + strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.115 kb on - strand at 31.115 kb on - strand at 31.115 kb on - strand at 31.115 kb on - strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.151 kb on + strand at 31.151 kb on + strand at 31.151 kb on + strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.362 kb on + strand, within MPMX19_02796 at 31.744 kb on + strand at 31.744 kb on + strand at 31.745 kb on - strand at 31.745 kb on - strand at 31.745 kb on - strand at 31.745 kb on - strand at 31.745 kb on - strand at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 32.188 kb on + strand, within MPMX19_02797 at 32.188 kb on + strand, within MPMX19_02797 at 32.188 kb on + strand, within MPMX19_02797 at 32.188 kb on + strand, within MPMX19_02797 at 32.188 kb on + strand, within MPMX19_02797 at 32.189 kb on - strand, within MPMX19_02797 at 32.189 kb on - strand, within MPMX19_02797 at 32.189 kb on - strand, within MPMX19_02797 at 32.189 kb on - strand, within MPMX19_02797 at 32.189 kb on - strand, within MPMX19_02797 at 32.189 kb on - strand, within MPMX19_02797 at 32.359 kb on + strand, within MPMX19_02797 at 32.360 kb on - strand, within MPMX19_02797 at 32.521 kb on + strand at 32.881 kb on + strand, within MPMX19_02798 at 32.881 kb on + strand, within MPMX19_02798 at 32.881 kb on + strand, within MPMX19_02798 at 32.881 kb on + strand, within MPMX19_02798 at 32.881 kb on + strand, within MPMX19_02798 at 32.882 kb on - strand, within MPMX19_02798 at 32.882 kb on - strand, within MPMX19_02798 at 32.882 kb on - strand, within MPMX19_02798 at 32.882 kb on - strand, within MPMX19_02798 at 32.882 kb on - strand, within MPMX19_02798 at 32.882 kb on - strand, within MPMX19_02798 at 32.882 kb on - strand, within MPMX19_02798 at 33.073 kb on + strand, within MPMX19_02798 at 33.073 kb on + strand, within MPMX19_02798 at 33.073 kb on + strand, within MPMX19_02798 at 33.073 kb on + strand, within MPMX19_02798 at 33.073 kb on + strand, within MPMX19_02798 at 33.073 kb on + strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.118 kb on + strand, within MPMX19_02798 at 33.118 kb on + strand, within MPMX19_02798 at 33.118 kb on + strand, within MPMX19_02798 at 33.118 kb on + strand, within MPMX19_02798 at 33.118 kb on + strand, within MPMX19_02798 at 33.119 kb on - strand, within MPMX19_02798 at 33.208 kb on + strand, within MPMX19_02798 at 33.208 kb on + strand, within MPMX19_02798 at 33.208 kb on + strand, within MPMX19_02798 at 33.209 kb on - strand, within MPMX19_02798 at 33.209 kb on - strand, within MPMX19_02798 at 33.209 kb on - strand, within MPMX19_02798 at 33.209 kb on - strand, within MPMX19_02798 at 33.209 kb on - strand, within MPMX19_02798 at 33.209 kb on - strand, within MPMX19_02798 at 33.209 kb on - strand, within MPMX19_02798 at 33.259 kb on + strand, within MPMX19_02798 at 33.259 kb on + strand, within MPMX19_02798 at 33.259 kb on + strand, within MPMX19_02798 at 33.260 kb on - strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.473 kb on - strand, within MPMX19_02798 at 33.473 kb on - strand, within MPMX19_02798 at 33.473 kb on - strand, within MPMX19_02798 at 33.473 kb on - strand, within MPMX19_02798 at 33.536 kb on - strand, within MPMX19_02798
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 30,748 + MPMX19_02795 0.70 -1.6 30,946 + MPMX19_02795 0.86 -0.4 30,947 - MPMX19_02795 0.86 -0.4 30,947 - MPMX19_02795 0.86 -1.0 31,048 + -0.3 31,049 - +0.1 31,049 - -0.3 31,049 - -2.7 31,049 - -0.4 31,049 - +0.6 31,049 - -1.2 31,115 - +0.3 31,115 - +0.2 31,115 - -0.9 31,115 - -1.9 31,148 + -1.0 31,148 + -0.8 31,148 + -0.1 31,148 + -0.6 31,148 + -0.4 31,148 + -0.7 31,148 + +0.7 31,148 + +0.2 31,148 + -0.5 31,148 + -0.5 31,148 + +1.2 31,148 + -2.5 31,148 + +0.7 31,148 + +0.3 31,148 + +0.4 31,148 + +0.3 31,148 + +0.9 31,148 + -0.7 31,148 + -0.2 31,149 - -2.0 31,149 - -2.3 31,149 - -0.8 31,149 - -0.1 31,149 - -2.9 31,149 - +1.3 31,149 - -1.1 31,149 - -0.4 31,149 - +1.0 31,149 - +0.1 31,149 - +1.0 31,149 - +0.4 31,149 - -0.1 31,149 - +0.0 31,149 - -2.7 31,149 - -0.2 31,149 - -0.8 31,149 - +1.0 31,149 - -0.9 31,149 - +1.5 31,149 - +0.0 31,151 + +0.1 31,151 + +0.6 31,151 + +0.1 31,152 - -0.4 31,152 - -0.9 31,152 - +0.9 31,152 - +0.0 31,152 - +0.9 31,152 - +0.1 31,281 + MPMX19_02796 0.27 -0.2 31,281 + MPMX19_02796 0.27 -0.2 31,281 + MPMX19_02796 0.27 +0.9 31,281 + MPMX19_02796 0.27 -1.8 31,281 + MPMX19_02796 0.27 -0.7 31,281 + MPMX19_02796 0.27 -0.4 31,281 + MPMX19_02796 0.27 -0.7 31,281 + MPMX19_02796 0.27 -1.0 31,282 - MPMX19_02796 0.27 +0.8 31,282 - MPMX19_02796 0.27 -0.8 31,282 - MPMX19_02796 0.27 -1.1 31,282 - MPMX19_02796 0.27 -1.1 31,282 - MPMX19_02796 0.27 -0.6 31,282 - MPMX19_02796 0.27 -0.4 31,362 + MPMX19_02796 0.41 +1.2 31,744 + +0.3 31,744 + +0.2 31,745 - +0.6 31,745 - +0.9 31,745 - -0.1 31,745 - +0.2 31,745 - -0.9 31,852 + MPMX19_02797 0.20 -0.6 31,852 + MPMX19_02797 0.20 +0.0 31,852 + MPMX19_02797 0.20 +0.6 31,852 + MPMX19_02797 0.20 -0.2 31,852 + MPMX19_02797 0.20 -0.5 31,852 + MPMX19_02797 0.20 +1.9 31,852 + MPMX19_02797 0.20 -0.5 31,852 + MPMX19_02797 0.20 -1.6 31,852 + MPMX19_02797 0.20 +0.9 31,852 + MPMX19_02797 0.20 -0.1 31,852 + MPMX19_02797 0.20 +0.2 31,853 - MPMX19_02797 0.20 -0.2 31,853 - MPMX19_02797 0.20 -2.1 31,853 - MPMX19_02797 0.20 -0.2 31,853 - MPMX19_02797 0.20 -0.3 31,853 - MPMX19_02797 0.20 -0.3 31,853 - MPMX19_02797 0.20 -0.9 31,853 - MPMX19_02797 0.20 +0.8 31,853 - MPMX19_02797 0.20 -2.7 31,853 - MPMX19_02797 0.20 +0.1 32,188 + MPMX19_02797 0.59 +0.9 32,188 + MPMX19_02797 0.59 +0.6 32,188 + MPMX19_02797 0.59 -0.4 32,188 + MPMX19_02797 0.59 +0.6 32,188 + MPMX19_02797 0.59 +0.6 32,189 - MPMX19_02797 0.59 +0.4 32,189 - MPMX19_02797 0.59 +1.0 32,189 - MPMX19_02797 0.59 +0.7 32,189 - MPMX19_02797 0.59 -0.4 32,189 - MPMX19_02797 0.59 -0.5 32,189 - MPMX19_02797 0.59 +0.1 32,359 + MPMX19_02797 0.79 -0.1 32,360 - MPMX19_02797 0.79 +0.4 32,521 + -3.0 32,881 + MPMX19_02798 0.21 -0.1 32,881 + MPMX19_02798 0.21 +0.0 32,881 + MPMX19_02798 0.21 +1.2 32,881 + MPMX19_02798 0.21 +1.8 32,881 + MPMX19_02798 0.21 -0.1 32,882 - MPMX19_02798 0.21 +0.1 32,882 - MPMX19_02798 0.21 -1.2 32,882 - MPMX19_02798 0.21 -0.9 32,882 - MPMX19_02798 0.21 -0.6 32,882 - MPMX19_02798 0.21 -0.1 32,882 - MPMX19_02798 0.21 -0.1 32,882 - MPMX19_02798 0.21 -0.4 33,073 + MPMX19_02798 0.38 -2.8 33,073 + MPMX19_02798 0.38 -1.2 33,073 + MPMX19_02798 0.38 -0.7 33,073 + MPMX19_02798 0.38 -1.2 33,073 + MPMX19_02798 0.38 +0.0 33,073 + MPMX19_02798 0.38 -1.7 33,074 - MPMX19_02798 0.38 +0.0 33,074 - MPMX19_02798 0.38 -0.9 33,074 - MPMX19_02798 0.38 +0.3 33,074 - MPMX19_02798 0.38 -0.6 33,074 - MPMX19_02798 0.38 -0.9 33,074 - MPMX19_02798 0.38 -2.1 33,074 - MPMX19_02798 0.38 -2.5 33,074 - MPMX19_02798 0.38 -1.0 33,074 - MPMX19_02798 0.38 -1.2 33,118 + MPMX19_02798 0.41 +1.4 33,118 + MPMX19_02798 0.41 -2.1 33,118 + MPMX19_02798 0.41 -0.1 33,118 + MPMX19_02798 0.41 +0.5 33,118 + MPMX19_02798 0.41 -2.5 33,119 - MPMX19_02798 0.42 +0.4 33,208 + MPMX19_02798 0.49 +0.6 33,208 + MPMX19_02798 0.49 +1.6 33,208 + MPMX19_02798 0.49 -0.1 33,209 - MPMX19_02798 0.49 -0.3 33,209 - MPMX19_02798 0.49 -0.4 33,209 - MPMX19_02798 0.49 +0.7 33,209 - MPMX19_02798 0.49 -1.2 33,209 - MPMX19_02798 0.49 -0.7 33,209 - MPMX19_02798 0.49 -0.4 33,209 - MPMX19_02798 0.49 -0.9 33,259 + MPMX19_02798 0.54 +0.9 33,259 + MPMX19_02798 0.54 +0.3 33,259 + MPMX19_02798 0.54 +0.3 33,260 - MPMX19_02798 0.54 +0.4 33,328 + MPMX19_02798 0.60 +0.3 33,328 + MPMX19_02798 0.60 -1.0 33,328 + MPMX19_02798 0.60 +0.3 33,328 + MPMX19_02798 0.60 +0.0 33,328 + MPMX19_02798 0.60 -1.6 33,328 + MPMX19_02798 0.60 -1.4 33,328 + MPMX19_02798 0.60 +1.4 33,328 + MPMX19_02798 0.60 -1.5 33,328 + MPMX19_02798 0.60 +0.5 33,328 + MPMX19_02798 0.60 +0.1 33,328 + MPMX19_02798 0.60 +0.2 33,328 + MPMX19_02798 0.60 -0.4 33,328 + MPMX19_02798 0.60 +0.2 33,328 + MPMX19_02798 0.60 +0.3 33,329 - MPMX19_02798 0.60 -0.1 33,329 - MPMX19_02798 0.60 -0.3 33,329 - MPMX19_02798 0.60 +0.0 33,329 - MPMX19_02798 0.60 -0.9 33,329 - MPMX19_02798 0.60 -0.5 33,329 - MPMX19_02798 0.60 -0.9 33,329 - MPMX19_02798 0.60 +0.1 33,329 - MPMX19_02798 0.60 +0.4 33,329 - MPMX19_02798 0.60 +0.4 33,329 - MPMX19_02798 0.60 -2.8 33,329 - MPMX19_02798 0.60 -0.9 33,329 - MPMX19_02798 0.60 -0.8 33,329 - MPMX19_02798 0.60 +0.5 33,329 - MPMX19_02798 0.60 -0.3 33,329 - MPMX19_02798 0.60 -0.4 33,472 + MPMX19_02798 0.72 -0.4 33,472 + MPMX19_02798 0.72 +0.1 33,472 + MPMX19_02798 0.72 -0.6 33,472 + MPMX19_02798 0.72 +0.0 33,472 + MPMX19_02798 0.72 -2.4 33,472 + MPMX19_02798 0.72 -0.0 33,472 + MPMX19_02798 0.72 -0.3 33,472 + MPMX19_02798 0.72 -1.3 33,473 - MPMX19_02798 0.73 -0.4 33,473 - MPMX19_02798 0.73 -1.3 33,473 - MPMX19_02798 0.73 -0.4 33,473 - MPMX19_02798 0.73 +1.6 33,536 - MPMX19_02798 0.78 +1.0
Or see this region's nucleotide sequence