Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02702

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
2,827,834	+		MPMX19_02701	0.12	-2.1
2,827,834	+		MPMX19_02701	0.12	-1.2
2,827,834	+		MPMX19_02701	0.12	+0.1
2,827,834	+		MPMX19_02701	0.12	-0.8
2,827,834	+		MPMX19_02701	0.12	-0.7
2,827,834	+		MPMX19_02701	0.12	-0.4
2,827,834	+		MPMX19_02701	0.12	+1.1
2,827,834	+		MPMX19_02701	0.12	-0.6
2,827,834	+		MPMX19_02701	0.12	+0.7
2,827,834	+		MPMX19_02701	0.12	+0.6
2,827,834	+		MPMX19_02701	0.12	-0.7
2,827,835	-		MPMX19_02701	0.12	-2.1
2,827,835	-		MPMX19_02701	0.12	-0.6
2,827,835	-		MPMX19_02701	0.12	-1.1
2,827,835	-		MPMX19_02701	0.12	-1.0
2,827,835	-		MPMX19_02701	0.12	-0.7
2,827,835	-		MPMX19_02701	0.12	-0.4
2,827,835	-		MPMX19_02701	0.12	+1.1
2,827,835	-		MPMX19_02701	0.12	-1.1
2,827,835	-		MPMX19_02701	0.12	-0.0
2,827,835	-		MPMX19_02701	0.12	-1.4
2,827,941	+		MPMX19_02701	0.24	-0.8
2,827,942	-		MPMX19_02701	0.24	-1.0
2,827,942	-		MPMX19_02701	0.24	-0.0
2,827,952	-		MPMX19_02701	0.25	-0.5
2,827,990	+		MPMX19_02701	0.29	-0.8
2,827,990	+		MPMX19_02701	0.29	+0.4
2,827,990	+		MPMX19_02701	0.29	+0.3
2,827,991	-		MPMX19_02701	0.29	-0.8
2,828,079	+		MPMX19_02701	0.39	-0.1
2,828,079	+		MPMX19_02701	0.39	-0.5
2,828,079	+		MPMX19_02701	0.39	+1.3
2,828,079	+		MPMX19_02701	0.39	-1.1
2,828,079	+		MPMX19_02701	0.39	-0.0
2,828,080	-		MPMX19_02701	0.39	-0.2
2,828,085	+		MPMX19_02701	0.39	-1.8
2,828,085	+		MPMX19_02701	0.39	-0.7
2,828,085	+		MPMX19_02701	0.39	+0.9
2,828,086	-		MPMX19_02701	0.39	+0.7
2,828,086	-		MPMX19_02701	0.39	-2.5
2,828,086	-		MPMX19_02701	0.39	-1.7
2,828,104	+		MPMX19_02701	0.41	+1.0
2,828,104	+		MPMX19_02701	0.41	-0.6
2,828,104	+		MPMX19_02701	0.41	+0.3
2,828,104	+		MPMX19_02701	0.41	-1.5
2,828,104	+		MPMX19_02701	0.41	-0.5
2,828,104	+		MPMX19_02701	0.41	-0.3
2,828,105	-		MPMX19_02701	0.41	-1.8
2,828,105	-		MPMX19_02701	0.41	+0.2
2,828,105	-		MPMX19_02701	0.41	-1.5
2,828,105	-		MPMX19_02701	0.41	-0.9
2,828,105	-		MPMX19_02701	0.41	-1.4
2,828,105	-		MPMX19_02701	0.41	-0.3
2,828,105	-		MPMX19_02701	0.41	-0.4
2,828,125	+		MPMX19_02701	0.44	-1.5
2,828,125	+		MPMX19_02701	0.44	-0.1
2,828,125	+		MPMX19_02701	0.44	+0.3
2,828,125	+		MPMX19_02701	0.44	-2.3
2,828,125	+		MPMX19_02701	0.44	-0.3
2,828,128	+		MPMX19_02701	0.44	-2.5
2,828,128	+		MPMX19_02701	0.44	-0.8
2,828,129	-		MPMX19_02701	0.44	-0.3
2,828,129	-		MPMX19_02701	0.44	-0.6
2,828,129	-		MPMX19_02701	0.44	-1.6
2,828,129	-		MPMX19_02701	0.44	-1.5
2,828,129	-		MPMX19_02701	0.44	-0.3
2,828,170	+		MPMX19_02701	0.48	+0.4
2,828,192	+		MPMX19_02701	0.51	-0.2
2,828,195	+		MPMX19_02701	0.51	-0.2
2,828,195	+		MPMX19_02701	0.51	-0.6
2,828,195	+		MPMX19_02701	0.51	-2.0
2,828,195	+		MPMX19_02701	0.51	-1.1
2,828,196	-		MPMX19_02701	0.51	+0.8
2,828,196	-		MPMX19_02701	0.51	+0.4
2,828,196	-		MPMX19_02701	0.51	-1.5
2,828,250	+		MPMX19_02701	0.57	-0.3
2,828,301	+		MPMX19_02701	0.63	-0.8
2,828,376	+		MPMX19_02701	0.71	+0.4
2,828,376	+		MPMX19_02701	0.71	+0.1
2,828,376	+		MPMX19_02701	0.71	-0.3
2,828,377	-		MPMX19_02701	0.71	+0.2
2,828,377	-		MPMX19_02701	0.71	+0.5
2,828,377	-		MPMX19_02701	0.71	-0.5
2,828,377	-		MPMX19_02701	0.71	-1.0
2,828,377	-		MPMX19_02701	0.71	+0.2
2,828,377	-		MPMX19_02701	0.71	-0.9
2,828,377	-		MPMX19_02701	0.71	-2.8
2,828,377	-		MPMX19_02701	0.71	+2.3
2,828,377	-		MPMX19_02701	0.71	-0.1
2,828,377	-		MPMX19_02701	0.71	-0.1
2,828,377	-		MPMX19_02701	0.71	-2.7
2,828,377	-		MPMX19_02701	0.71	-0.2
2,828,391	+		MPMX19_02701	0.72	+0.5
2,828,392	-		MPMX19_02701	0.72	+0.3
2,828,392	-		MPMX19_02701	0.72	-1.3
2,828,392	-		MPMX19_02701	0.72	-0.2
2,828,392	-		MPMX19_02701	0.72	+0.1
2,828,428	+		MPMX19_02701	0.76	+0.1
2,828,428	+		MPMX19_02701	0.76	+0.2
2,828,429	-		MPMX19_02701	0.76	-0.7
2,828,451	+		MPMX19_02701	0.79	-2.0
2,828,451	+		MPMX19_02701	0.79	-0.3
2,828,451	+		MPMX19_02701	0.79	-0.5
2,828,451	+		MPMX19_02701	0.79	+0.4
2,828,451	+		MPMX19_02701	0.79	+0.7
2,828,451	+		MPMX19_02701	0.79	+1.0
2,828,451	+		MPMX19_02701	0.79	+0.1
2,828,451	+		MPMX19_02701	0.79	+0.4
2,828,452	-		MPMX19_02701	0.79	+0.1
2,828,452	-		MPMX19_02701	0.79	+0.0
2,828,452	-		MPMX19_02701	0.79	-1.4
2,828,452	-		MPMX19_02701	0.79	-0.9
2,828,452	-		MPMX19_02701	0.79	+0.9
2,828,452	-		MPMX19_02701	0.79	-1.9
2,828,452	-		MPMX19_02701	0.79	-0.6
2,828,621	+				+0.7
2,828,666	+				-0.3
2,828,666	+				+0.7
2,828,666	+				+1.1
2,828,666	+				-1.8
2,828,667	-				+0.2
2,828,706	-				+0.3
2,828,706	-				-0.7
2,828,706	-				-0.1
2,828,706	-				-1.3
2,828,706	-				-2.6
2,828,732	+				-0.3
2,828,732	+				-1.1
2,828,732	+				-1.5
2,828,733	-				-0.0
2,828,734	+				-0.9
2,828,734	+				-2.1
2,828,734	+				+1.5
2,828,734	+				-1.3
2,828,734	+				-0.4
2,828,734	+				+1.1
2,828,734	+				-1.1
2,828,734	+				+0.0
2,828,734	+				-1.2
2,828,734	+				-0.1
2,828,734	+				-1.2
2,828,734	+				-0.0
2,828,735	-				-1.3
2,828,735	-				-2.1
2,828,735	-				+0.4
2,828,735	-				-0.4
2,828,735	-				+0.6
2,828,735	-				+0.5
2,828,735	-				-0.9
2,828,735	-				-0.1
2,828,735	-				+0.0
2,828,735	-				-0.0
2,828,735	-				+0.3
2,828,735	-				-1.9
2,828,745	-				-0.9
2,828,773	+				-0.8
2,828,773	+				+0.3
2,828,773	+				+0.6
2,828,774	-				+0.4
2,828,774	-				-0.1
2,828,774	-				-0.7
2,828,774	-				+0.1
2,828,774	-				-0.9
2,828,774	-				-2.8
2,828,784	-				-0.4
2,828,784	-				+0.8
2,828,826	+				-0.6
2,828,827	-				-1.9
2,828,839	-				-1.3
2,828,839	-				-1.5
2,828,839	-				-0.0
2,828,839	-				-0.3
2,828,839	-				-1.5
2,828,921	-		MPMX19_02702	0.63	-0.3
2,828,921	-		MPMX19_02702	0.63	-1.0
2,828,931	+		MPMX19_02702	0.70	-0.9
2,828,931	+		MPMX19_02702	0.70	-0.7
2,828,931	+		MPMX19_02702	0.70	-2.0
2,828,931	+		MPMX19_02702	0.70	+0.5
2,828,932	-		MPMX19_02702	0.71	-1.8
2,828,932	-		MPMX19_02702	0.71	-1.0
2,828,932	-		MPMX19_02702	0.71	-2.7
2,828,932	-		MPMX19_02702	0.71	-0.5
2,828,932	-		MPMX19_02702	0.71	-0.9
2,828,987	-				+0.0
2,829,063	+				-0.5
2,829,064	-				-1.5
2,829,076	+				-0.3
2,829,077	-				-1.6
2,829,077	-				-1.0
2,829,077	-				-1.8
2,829,077	-				-1.8
2,829,204	-				-0.8
2,829,207	-				-1.7
2,829,232	-				-0.9
2,829,355	+				+0.9
2,829,378	-				-1.1
2,829,400	+				-0.6
2,829,401	-				-0.8
2,829,420	+				-0.8
2,829,420	+				+0.0
2,829,463	-				+0.1
2,829,464	+				-1.5
2,829,464	+				-1.1
2,829,464	+				-1.2
2,829,464	+				-2.2
2,829,464	+				-0.5
2,829,465	-				-0.9
2,829,465	-				-0.3
2,829,465	-				-0.9
2,829,465	-				+0.8
2,829,465	-				-0.5
2,829,465	-				+0.7
2,829,465	-				-1.3
2,829,465	-				-1.5
2,829,518	+				+0.1
2,829,518	+				+0.8
2,829,545	+				-1.1
2,829,545	+				+0.6
2,829,546	-				-1.1
2,829,570	-				+0.4
2,829,570	-				-0.6
2,829,610	-				+0.4
2,829,640	+				-0.0
2,829,640	+				-0.3
2,829,640	+				-1.9
2,829,640	+				+0.0
2,829,640	+				+0.1
2,829,640	+				-0.8
2,829,641	-				-0.4
2,829,641	-				-1.8
2,829,658	+				-1.1
2,829,658	+				-1.6
2,829,658	+				-0.6
2,829,658	+				-1.6
2,829,736	+				-1.2
2,829,737	-				-0.9
2,829,737	-				-0.2
2,829,739	+				-0.5
2,829,739	+				-0.3
2,829,740	-				+0.4
2,829,740	-				-0.1
2,829,740	-				-0.3
2,829,771	+				-1.6
2,829,772	-				-2.3
2,829,772	-				-0.3
2,829,772	-				-0.6
2,829,772	-				-0.9