Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01859 and MPMX19_01860 overlap by 4 nucleotides MPMX19_01860 and MPMX19_01861 are separated by 9 nucleotides
MPMX19_01859: MPMX19_01859 - 3'-5' exonuclease DinG, at 1,936,277 to 1,938,502
_01859
MPMX19_01860: MPMX19_01860 - hypothetical protein, at 1,938,499 to 1,938,723
_01860
MPMX19_01861: MPMX19_01861 - Adaptive-response sensory-kinase SasA, at 1,938,733 to 1,941,537
_01861
Position (kb) 1938
1939 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1937.499 kb on - strand, within MPMX19_01859 at 1937.499 kb on - strand, within MPMX19_01859 at 1937.499 kb on - strand, within MPMX19_01859 at 1937.499 kb on - strand, within MPMX19_01859 at 1937.585 kb on + strand, within MPMX19_01859 at 1937.585 kb on + strand, within MPMX19_01859 at 1937.585 kb on + strand, within MPMX19_01859 at 1937.586 kb on - strand, within MPMX19_01859 at 1937.586 kb on - strand, within MPMX19_01859 at 1937.586 kb on - strand, within MPMX19_01859 at 1937.586 kb on - strand, within MPMX19_01859 at 1937.586 kb on - strand, within MPMX19_01859 at 1937.586 kb on - strand, within MPMX19_01859 at 1937.586 kb on - strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.918 kb on + strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1937.919 kb on - strand, within MPMX19_01859 at 1938.655 kb on + strand, within MPMX19_01860 at 1938.655 kb on + strand, within MPMX19_01860 at 1938.655 kb on + strand, within MPMX19_01860 at 1938.655 kb on + strand, within MPMX19_01860 at 1938.655 kb on + strand, within MPMX19_01860 at 1938.655 kb on + strand, within MPMX19_01860 at 1938.655 kb on + strand, within MPMX19_01860 at 1938.655 kb on + strand, within MPMX19_01860 at 1938.656 kb on - strand, within MPMX19_01860 at 1938.656 kb on - strand, within MPMX19_01860 at 1938.656 kb on - strand, within MPMX19_01860 at 1938.656 kb on - strand, within MPMX19_01860 at 1938.656 kb on - strand, within MPMX19_01860 at 1938.721 kb on + strand at 1938.721 kb on + strand at 1938.721 kb on + strand at 1938.721 kb on + strand at 1938.721 kb on + strand at 1938.721 kb on + strand at 1938.721 kb on + strand at 1938.721 kb on + strand at 1938.721 kb on + strand at 1938.722 kb on - strand at 1938.722 kb on - strand at 1938.722 kb on - strand at 1938.722 kb on - strand at 1938.722 kb on - strand at 1938.781 kb on + strand at 1938.781 kb on + strand at 1938.781 kb on + strand at 1938.781 kb on + strand at 1938.781 kb on + strand at 1938.781 kb on + strand at 1938.782 kb on - strand at 1938.782 kb on - strand at 1938.782 kb on - strand at 1938.782 kb on - strand at 1938.840 kb on + strand at 1938.841 kb on - strand at 1938.841 kb on - strand at 1938.886 kb on + strand at 1938.886 kb on + strand at 1938.886 kb on + strand at 1938.886 kb on + strand at 1938.886 kb on + strand at 1938.886 kb on + strand at 1938.886 kb on + strand at 1938.886 kb on + strand at 1938.886 kb on + strand at 1938.886 kb on + strand at 1938.886 kb on + strand at 1938.886 kb on + strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.887 kb on - strand at 1938.907 kb on + strand at 1938.907 kb on + strand at 1938.907 kb on + strand at 1938.907 kb on + strand at 1938.907 kb on + strand at 1938.907 kb on + strand at 1938.907 kb on + strand at 1938.907 kb on + strand at 1938.907 kb on + strand at 1938.907 kb on + strand at 1938.907 kb on + strand at 1938.907 kb on + strand at 1938.907 kb on + strand at 1938.908 kb on - strand at 1938.908 kb on - strand at 1938.908 kb on - strand at 1938.908 kb on - strand at 1938.908 kb on - strand at 1938.908 kb on - strand at 1938.908 kb on - strand at 1938.908 kb on - strand at 1938.908 kb on - strand at 1938.908 kb on - strand at 1938.908 kb on - strand at 1938.908 kb on - strand at 1938.958 kb on + strand at 1938.958 kb on + strand at 1938.959 kb on - strand at 1938.959 kb on - strand at 1938.959 kb on - strand at 1938.959 kb on - strand at 1938.959 kb on - strand at 1939.132 kb on + strand, within MPMX19_01861 at 1939.132 kb on + strand, within MPMX19_01861 at 1939.132 kb on + strand, within MPMX19_01861 at 1939.132 kb on + strand, within MPMX19_01861 at 1939.132 kb on + strand, within MPMX19_01861 at 1939.132 kb on + strand, within MPMX19_01861 at 1939.132 kb on + strand, within MPMX19_01861 at 1939.132 kb on + strand, within MPMX19_01861 at 1939.132 kb on + strand, within MPMX19_01861 at 1939.132 kb on + strand, within MPMX19_01861 at 1939.132 kb on + strand, within MPMX19_01861 at 1939.132 kb on + strand, within MPMX19_01861 at 1939.132 kb on + strand, within MPMX19_01861 at 1939.132 kb on + strand, within MPMX19_01861 at 1939.133 kb on - strand, within MPMX19_01861 at 1939.133 kb on - strand, within MPMX19_01861 at 1939.133 kb on - strand, within MPMX19_01861 at 1939.133 kb on - strand, within MPMX19_01861 at 1939.133 kb on - strand, within MPMX19_01861 at 1939.133 kb on - strand, within MPMX19_01861 at 1939.133 kb on - strand, within MPMX19_01861 at 1939.133 kb on - strand, within MPMX19_01861 at 1939.133 kb on - strand, within MPMX19_01861 at 1939.630 kb on + strand, within MPMX19_01861 at 1939.630 kb on + strand, within MPMX19_01861 at 1939.630 kb on + strand, within MPMX19_01861 at 1939.630 kb on + strand, within MPMX19_01861 at 1939.630 kb on + strand, within MPMX19_01861 at 1939.630 kb on + strand, within MPMX19_01861 at 1939.630 kb on + strand, within MPMX19_01861 at 1939.630 kb on + strand, within MPMX19_01861 at 1939.630 kb on + strand, within MPMX19_01861 at 1939.630 kb on + strand, within MPMX19_01861 at 1939.630 kb on + strand, within MPMX19_01861 at 1939.630 kb on + strand, within MPMX19_01861 at 1939.631 kb on - strand, within MPMX19_01861 at 1939.631 kb on - strand, within MPMX19_01861 at 1939.631 kb on - strand, within MPMX19_01861 at 1939.631 kb on - strand, within MPMX19_01861 at 1939.631 kb on - strand, within MPMX19_01861 at 1939.631 kb on - strand, within MPMX19_01861 at 1939.631 kb on - strand, within MPMX19_01861 at 1939.631 kb on - strand, within MPMX19_01861 at 1939.631 kb on - strand, within MPMX19_01861 at 1939.631 kb on - strand, within MPMX19_01861 at 1939.631 kb on - strand, within MPMX19_01861
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 1,937,499 - MPMX19_01859 0.55 -0.8 1,937,499 - MPMX19_01859 0.55 +0.8 1,937,499 - MPMX19_01859 0.55 -0.6 1,937,499 - MPMX19_01859 0.55 -1.9 1,937,585 + MPMX19_01859 0.59 +0.8 1,937,585 + MPMX19_01859 0.59 +1.0 1,937,585 + MPMX19_01859 0.59 -0.6 1,937,586 - MPMX19_01859 0.59 -0.8 1,937,586 - MPMX19_01859 0.59 -0.8 1,937,586 - MPMX19_01859 0.59 -0.9 1,937,586 - MPMX19_01859 0.59 +1.5 1,937,586 - MPMX19_01859 0.59 -1.9 1,937,586 - MPMX19_01859 0.59 -0.6 1,937,586 - MPMX19_01859 0.59 +0.1 1,937,918 + MPMX19_01859 0.74 -1.8 1,937,918 + MPMX19_01859 0.74 -0.9 1,937,918 + MPMX19_01859 0.74 +0.1 1,937,918 + MPMX19_01859 0.74 -0.8 1,937,918 + MPMX19_01859 0.74 +0.5 1,937,918 + MPMX19_01859 0.74 -0.3 1,937,918 + MPMX19_01859 0.74 -1.1 1,937,918 + MPMX19_01859 0.74 -1.5 1,937,918 + MPMX19_01859 0.74 +0.2 1,937,918 + MPMX19_01859 0.74 -0.3 1,937,918 + MPMX19_01859 0.74 -0.9 1,937,918 + MPMX19_01859 0.74 -0.4 1,937,918 + MPMX19_01859 0.74 -0.8 1,937,918 + MPMX19_01859 0.74 +1.5 1,937,918 + MPMX19_01859 0.74 +1.3 1,937,918 + MPMX19_01859 0.74 -1.3 1,937,918 + MPMX19_01859 0.74 +0.7 1,937,918 + MPMX19_01859 0.74 +1.4 1,937,919 - MPMX19_01859 0.74 -0.2 1,937,919 - MPMX19_01859 0.74 -2.2 1,937,919 - MPMX19_01859 0.74 -0.5 1,937,919 - MPMX19_01859 0.74 -0.8 1,937,919 - MPMX19_01859 0.74 -1.1 1,937,919 - MPMX19_01859 0.74 -0.5 1,937,919 - MPMX19_01859 0.74 +0.7 1,937,919 - MPMX19_01859 0.74 +0.7 1,937,919 - MPMX19_01859 0.74 -0.4 1,937,919 - MPMX19_01859 0.74 +0.3 1,937,919 - MPMX19_01859 0.74 -0.5 1,937,919 - MPMX19_01859 0.74 -0.5 1,937,919 - MPMX19_01859 0.74 +0.6 1,937,919 - MPMX19_01859 0.74 -1.6 1,937,919 - MPMX19_01859 0.74 -0.5 1,937,919 - MPMX19_01859 0.74 -0.4 1,937,919 - MPMX19_01859 0.74 +0.2 1,937,919 - MPMX19_01859 0.74 +0.2 1,937,919 - MPMX19_01859 0.74 -1.1 1,937,919 - MPMX19_01859 0.74 -1.6 1,937,919 - MPMX19_01859 0.74 +1.5 1,937,919 - MPMX19_01859 0.74 -1.5 1,938,655 + MPMX19_01860 0.69 -0.4 1,938,655 + MPMX19_01860 0.69 -0.6 1,938,655 + MPMX19_01860 0.69 -0.1 1,938,655 + MPMX19_01860 0.69 -2.1 1,938,655 + MPMX19_01860 0.69 -1.6 1,938,655 + MPMX19_01860 0.69 -0.7 1,938,655 + MPMX19_01860 0.69 -0.6 1,938,655 + MPMX19_01860 0.69 -1.9 1,938,656 - MPMX19_01860 0.70 -0.9 1,938,656 - MPMX19_01860 0.70 +0.0 1,938,656 - MPMX19_01860 0.70 -0.8 1,938,656 - MPMX19_01860 0.70 -1.5 1,938,656 - MPMX19_01860 0.70 -0.1 1,938,721 + +0.5 1,938,721 + -1.5 1,938,721 + -0.3 1,938,721 + +0.9 1,938,721 + -0.2 1,938,721 + -0.9 1,938,721 + -1.9 1,938,721 + +0.7 1,938,721 + +0.7 1,938,722 - -1.7 1,938,722 - -0.6 1,938,722 - +0.7 1,938,722 - +0.7 1,938,722 - -1.1 1,938,781 + -0.9 1,938,781 + +0.9 1,938,781 + -0.1 1,938,781 + -0.9 1,938,781 + +0.3 1,938,781 + +0.9 1,938,782 - -2.6 1,938,782 - -0.5 1,938,782 - -2.5 1,938,782 - +0.8 1,938,840 + +0.5 1,938,841 - -0.8 1,938,841 - -1.7 1,938,886 + +0.1 1,938,886 + -2.6 1,938,886 + -1.4 1,938,886 + -2.4 1,938,886 + -0.6 1,938,886 + -0.3 1,938,886 + -0.5 1,938,886 + -0.3 1,938,886 + -0.3 1,938,886 + +0.5 1,938,886 + -0.6 1,938,886 + -0.8 1,938,887 - +0.4 1,938,887 - -1.0 1,938,887 - -0.1 1,938,887 - -0.6 1,938,887 - +0.5 1,938,887 - -0.6 1,938,887 - +0.9 1,938,887 - +0.2 1,938,887 - +0.9 1,938,887 - -2.1 1,938,887 - -0.2 1,938,887 - -0.8 1,938,887 - -0.9 1,938,887 - -1.0 1,938,887 - -0.6 1,938,887 - +1.1 1,938,887 - -0.2 1,938,887 - -0.3 1,938,887 - -0.2 1,938,907 + -0.5 1,938,907 + -0.5 1,938,907 + -0.8 1,938,907 + +0.3 1,938,907 + -1.4 1,938,907 + -0.8 1,938,907 + +0.1 1,938,907 + -1.2 1,938,907 + -0.1 1,938,907 + +0.7 1,938,907 + +0.1 1,938,907 + +1.9 1,938,907 + +0.3 1,938,908 - +0.5 1,938,908 - -0.8 1,938,908 - +0.2 1,938,908 - +0.3 1,938,908 - +0.6 1,938,908 - -0.6 1,938,908 - +1.3 1,938,908 - -0.2 1,938,908 - +0.4 1,938,908 - +0.5 1,938,908 - -0.7 1,938,908 - +0.9 1,938,958 + -0.7 1,938,958 + -1.9 1,938,959 - -0.5 1,938,959 - +0.1 1,938,959 - -0.8 1,938,959 - -0.7 1,938,959 - -2.4 1,939,132 + MPMX19_01861 0.14 -2.6 1,939,132 + MPMX19_01861 0.14 -0.6 1,939,132 + MPMX19_01861 0.14 -0.8 1,939,132 + MPMX19_01861 0.14 -0.3 1,939,132 + MPMX19_01861 0.14 -0.6 1,939,132 + MPMX19_01861 0.14 -0.8 1,939,132 + MPMX19_01861 0.14 +0.1 1,939,132 + MPMX19_01861 0.14 -0.5 1,939,132 + MPMX19_01861 0.14 +1.0 1,939,132 + MPMX19_01861 0.14 -0.4 1,939,132 + MPMX19_01861 0.14 -1.1 1,939,132 + MPMX19_01861 0.14 -1.8 1,939,132 + MPMX19_01861 0.14 +1.0 1,939,132 + MPMX19_01861 0.14 +0.8 1,939,133 - MPMX19_01861 0.14 -0.1 1,939,133 - MPMX19_01861 0.14 +0.8 1,939,133 - MPMX19_01861 0.14 +0.4 1,939,133 - MPMX19_01861 0.14 -0.9 1,939,133 - MPMX19_01861 0.14 -0.6 1,939,133 - MPMX19_01861 0.14 -1.5 1,939,133 - MPMX19_01861 0.14 -0.4 1,939,133 - MPMX19_01861 0.14 -1.6 1,939,133 - MPMX19_01861 0.14 -1.5 1,939,630 + MPMX19_01861 0.32 -0.3 1,939,630 + MPMX19_01861 0.32 +0.2 1,939,630 + MPMX19_01861 0.32 -0.8 1,939,630 + MPMX19_01861 0.32 +1.1 1,939,630 + MPMX19_01861 0.32 +0.4 1,939,630 + MPMX19_01861 0.32 -0.8 1,939,630 + MPMX19_01861 0.32 +0.0 1,939,630 + MPMX19_01861 0.32 +0.3 1,939,630 + MPMX19_01861 0.32 +2.0 1,939,630 + MPMX19_01861 0.32 -0.9 1,939,630 + MPMX19_01861 0.32 +0.5 1,939,630 + MPMX19_01861 0.32 -0.3 1,939,631 - MPMX19_01861 0.32 -0.9 1,939,631 - MPMX19_01861 0.32 +0.2 1,939,631 - MPMX19_01861 0.32 -0.5 1,939,631 - MPMX19_01861 0.32 -0.3 1,939,631 - MPMX19_01861 0.32 +0.2 1,939,631 - MPMX19_01861 0.32 -0.9 1,939,631 - MPMX19_01861 0.32 -0.3 1,939,631 - MPMX19_01861 0.32 +0.5 1,939,631 - MPMX19_01861 0.32 +0.2 1,939,631 - MPMX19_01861 0.32 -1.3 1,939,631 - MPMX19_01861 0.32 -0.8
Or see this region's nucleotide sequence