Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01630

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01629 and MPMX19_01630 are separated by 73 nucleotidesMPMX19_01630 and MPMX19_01631 are separated by 46 nucleotides MPMX19_01629: MPMX19_01629 - hypothetical protein, at 1,708,384 to 1,709,889 _01629 MPMX19_01630: MPMX19_01630 - Phosphoribosylamine--glycine ligase, at 1,709,963 to 1,711,249 _01630 MPMX19_01631: MPMX19_01631 - Exodeoxyribonuclease 7 large subunit, at 1,711,296 to 1,712,957 _01631 Position (kb) 1709 1710 1711 1712Strain fitness (log2 ratio) -2 -1 0 1 2at 1709.083 kb on + strand, within MPMX19_01629at 1709.083 kb on + strand, within MPMX19_01629at 1709.122 kb on + strand, within MPMX19_01629at 1709.122 kb on + strand, within MPMX19_01629at 1709.122 kb on + strand, within MPMX19_01629at 1709.122 kb on + strand, within MPMX19_01629at 1709.122 kb on + strand, within MPMX19_01629at 1709.122 kb on + strand, within MPMX19_01629at 1709.122 kb on + strand, within MPMX19_01629at 1709.122 kb on + strand, within MPMX19_01629at 1709.122 kb on + strand, within MPMX19_01629at 1709.122 kb on + strand, within MPMX19_01629at 1709.123 kb on - strand, within MPMX19_01629at 1709.123 kb on - strand, within MPMX19_01629at 1709.123 kb on - strand, within MPMX19_01629at 1709.123 kb on - strand, within MPMX19_01629at 1709.123 kb on - strand, within MPMX19_01629at 1710.040 kb on - strandat 1710.040 kb on - strandat 1710.040 kb on - strandat 1710.213 kb on + strand, within MPMX19_01630at 1710.559 kb on - strand, within MPMX19_01630at 1710.855 kb on + strand, within MPMX19_01630at 1710.855 kb on + strand, within MPMX19_01630at 1710.855 kb on + strand, within MPMX19_01630at 1710.855 kb on + strand, within MPMX19_01630at 1710.856 kb on - strand, within MPMX19_01630at 1710.856 kb on - strand, within MPMX19_01630at 1710.856 kb on - strand, within MPMX19_01630at 1710.891 kb on + strand, within MPMX19_01630at 1710.891 kb on + strand, within MPMX19_01630at 1710.891 kb on + strand, within MPMX19_01630at 1710.891 kb on + strand, within MPMX19_01630at 1710.891 kb on + strand, within MPMX19_01630at 1710.891 kb on + strand, within MPMX19_01630at 1710.891 kb on + strand, within MPMX19_01630at 1710.892 kb on - strand, within MPMX19_01630at 1710.892 kb on - strand, within MPMX19_01630at 1710.912 kb on + strand, within MPMX19_01630at 1710.913 kb on - strand, within MPMX19_01630at 1710.913 kb on - strand, within MPMX19_01630at 1711.164 kb on + strandat 1711.165 kb on - strandat 1711.292 kb on + strandat 1711.292 kb on + strandat 1711.292 kb on + strandat 1711.292 kb on + strandat 1711.292 kb on + strandat 1711.292 kb on + strandat 1711.292 kb on + strandat 1711.292 kb on + strandat 1711.292 kb on + strandat 1711.292 kb on + strandat 1711.292 kb on + strandat 1711.292 kb on + strandat 1711.292 kb on + strandat 1711.292 kb on + strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.293 kb on - strandat 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.515 kb on + strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.516 kb on - strand, within MPMX19_01631at 1711.638 kb on + strand, within MPMX19_01631at 1711.638 kb on + strand, within MPMX19_01631at 1711.638 kb on + strand, within MPMX19_01631at 1711.638 kb on + strand, within MPMX19_01631at 1711.638 kb on + strand, within MPMX19_01631at 1711.639 kb on - strand, within MPMX19_01631at 1711.639 kb on - strand, within MPMX19_01631at 1711.639 kb on - strand, within MPMX19_01631at 1711.639 kb on - strand, within MPMX19_01631at 1711.639 kb on - strand, within MPMX19_01631at 1711.639 kb on - strand, within MPMX19_01631at 1711.639 kb on - strand, within MPMX19_01631at 1711.639 kb on - strand, within MPMX19_01631at 1711.656 kb on + strand, within MPMX19_01631at 1711.657 kb on - strand, within MPMX19_01631at 1711.657 kb on - strand, within MPMX19_01631at 1711.657 kb on - strand, within MPMX19_01631

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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1,709,083 + MPMX19_01629 0.46 -0.5
1,709,083 + MPMX19_01629 0.46 -1.1
1,709,122 + MPMX19_01629 0.49 -0.3
1,709,122 + MPMX19_01629 0.49 -1.4
1,709,122 + MPMX19_01629 0.49 +0.4
1,709,122 + MPMX19_01629 0.49 -0.2
1,709,122 + MPMX19_01629 0.49 +0.6
1,709,122 + MPMX19_01629 0.49 -2.1
1,709,122 + MPMX19_01629 0.49 +0.0
1,709,122 + MPMX19_01629 0.49 -0.1
1,709,122 + MPMX19_01629 0.49 +0.5
1,709,122 + MPMX19_01629 0.49 -0.7
1,709,123 - MPMX19_01629 0.49 +0.2
1,709,123 - MPMX19_01629 0.49 -0.2
1,709,123 - MPMX19_01629 0.49 +0.0
1,709,123 - MPMX19_01629 0.49 +1.0
1,709,123 - MPMX19_01629 0.49 -0.3
1,710,040 - -1.5
1,710,040 - -0.5
1,710,040 - +1.0
1,710,213 + MPMX19_01630 0.19 -2.1
1,710,559 - MPMX19_01630 0.46 -2.5
1,710,855 + MPMX19_01630 0.69 -1.1
1,710,855 + MPMX19_01630 0.69 +0.2
1,710,855 + MPMX19_01630 0.69 -1.3
1,710,855 + MPMX19_01630 0.69 +0.2
1,710,856 - MPMX19_01630 0.69 -2.1
1,710,856 - MPMX19_01630 0.69 -0.6
1,710,856 - MPMX19_01630 0.69 +0.0
1,710,891 + MPMX19_01630 0.72 -1.1
1,710,891 + MPMX19_01630 0.72 -0.5
1,710,891 + MPMX19_01630 0.72 -2.6
1,710,891 + MPMX19_01630 0.72 -0.1
1,710,891 + MPMX19_01630 0.72 -2.1
1,710,891 + MPMX19_01630 0.72 -0.2
1,710,891 + MPMX19_01630 0.72 -1.7
1,710,892 - MPMX19_01630 0.72 +1.5
1,710,892 - MPMX19_01630 0.72 -2.3
1,710,912 + MPMX19_01630 0.74 -1.2
1,710,913 - MPMX19_01630 0.74 -0.2
1,710,913 - MPMX19_01630 0.74 -0.6
1,711,164 + -0.2
1,711,165 - -0.5
1,711,292 + -2.6
1,711,292 + -1.5
1,711,292 + -2.3
1,711,292 + +0.2
1,711,292 + +0.9
1,711,292 + -1.6
1,711,292 + -1.9
1,711,292 + -0.2
1,711,292 + -1.3
1,711,292 + -1.7
1,711,292 + -1.8
1,711,292 + -1.0
1,711,292 + -1.0
1,711,292 + -0.1
1,711,293 - +0.2
1,711,293 - -2.3
1,711,293 - -0.8
1,711,293 - -0.7
1,711,293 - -0.1
1,711,293 - -0.1
1,711,293 - -0.2
1,711,293 - -0.3
1,711,293 - +0.0
1,711,293 - -0.1
1,711,293 - +1.0
1,711,293 - +0.1
1,711,293 - -0.2
1,711,293 - -1.0
1,711,293 - +0.7
1,711,293 - -1.0
1,711,293 - -0.1
1,711,293 - -1.5
1,711,293 - -0.8
1,711,293 - -1.0
1,711,293 - -2.4
1,711,293 - -0.6
1,711,293 - -0.9
1,711,293 - -0.4
1,711,293 - -0.6
1,711,293 - -0.1
1,711,293 - -0.1
1,711,293 - -1.3
1,711,515 + MPMX19_01631 0.13 +0.5
1,711,515 + MPMX19_01631 0.13 +0.9
1,711,515 + MPMX19_01631 0.13 +0.8
1,711,515 + MPMX19_01631 0.13 -0.6
1,711,515 + MPMX19_01631 0.13 -1.1
1,711,515 + MPMX19_01631 0.13 +0.4
1,711,515 + MPMX19_01631 0.13 +0.2
1,711,515 + MPMX19_01631 0.13 -0.5
1,711,515 + MPMX19_01631 0.13 +2.0
1,711,515 + MPMX19_01631 0.13 -1.7
1,711,515 + MPMX19_01631 0.13 +0.0
1,711,515 + MPMX19_01631 0.13 -0.5
1,711,515 + MPMX19_01631 0.13 +0.2
1,711,515 + MPMX19_01631 0.13 +1.0
1,711,515 + MPMX19_01631 0.13 +1.2
1,711,515 + MPMX19_01631 0.13 +0.7
1,711,515 + MPMX19_01631 0.13 -1.8
1,711,515 + MPMX19_01631 0.13 -1.6
1,711,515 + MPMX19_01631 0.13 -0.8
1,711,515 + MPMX19_01631 0.13 -1.5
1,711,515 + MPMX19_01631 0.13 -1.4
1,711,516 - MPMX19_01631 0.13 -0.5
1,711,516 - MPMX19_01631 0.13 -0.3
1,711,516 - MPMX19_01631 0.13 -1.7
1,711,516 - MPMX19_01631 0.13 -0.2
1,711,516 - MPMX19_01631 0.13 +1.3
1,711,516 - MPMX19_01631 0.13 +0.2
1,711,516 - MPMX19_01631 0.13 +0.7
1,711,516 - MPMX19_01631 0.13 -0.7
1,711,516 - MPMX19_01631 0.13 -1.2
1,711,516 - MPMX19_01631 0.13 -0.1
1,711,516 - MPMX19_01631 0.13 -0.3
1,711,516 - MPMX19_01631 0.13 -0.5
1,711,516 - MPMX19_01631 0.13 -0.2
1,711,516 - MPMX19_01631 0.13 +1.1
1,711,516 - MPMX19_01631 0.13 +0.1
1,711,516 - MPMX19_01631 0.13 -1.7
1,711,516 - MPMX19_01631 0.13 -0.7
1,711,516 - MPMX19_01631 0.13 +0.2
1,711,516 - MPMX19_01631 0.13 -1.5
1,711,516 - MPMX19_01631 0.13 +0.9
1,711,516 - MPMX19_01631 0.13 -2.0
1,711,516 - MPMX19_01631 0.13 -0.8
1,711,516 - MPMX19_01631 0.13 -1.7
1,711,516 - MPMX19_01631 0.13 +0.1
1,711,516 - MPMX19_01631 0.13 -0.1
1,711,516 - MPMX19_01631 0.13 +0.3
1,711,638 + MPMX19_01631 0.21 -0.7
1,711,638 + MPMX19_01631 0.21 -0.2
1,711,638 + MPMX19_01631 0.21 -1.7
1,711,638 + MPMX19_01631 0.21 -2.3
1,711,638 + MPMX19_01631 0.21 +0.5
1,711,639 - MPMX19_01631 0.21 -0.7
1,711,639 - MPMX19_01631 0.21 +0.8
1,711,639 - MPMX19_01631 0.21 +0.5
1,711,639 - MPMX19_01631 0.21 +0.2
1,711,639 - MPMX19_01631 0.21 +0.3
1,711,639 - MPMX19_01631 0.21 +0.2
1,711,639 - MPMX19_01631 0.21 -1.0
1,711,639 - MPMX19_01631 0.21 -0.5
1,711,656 + MPMX19_01631 0.22 +1.8
1,711,657 - MPMX19_01631 0.22 +0.5
1,711,657 - MPMX19_01631 0.22 -1.8
1,711,657 - MPMX19_01631 0.22 -1.5

Or see this region's nucleotide sequence