Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00796 and MPMX19_00797 are separated by 10 nucleotides MPMX19_00797 and MPMX19_00798 are separated by 67 nucleotides
MPMX19_00796: MPMX19_00796 - hypothetical protein, at 816,825 to 817,913
_00796
MPMX19_00797: MPMX19_00797 - Multidrug resistance protein 3, at 817,924 to 819,480
_00797
MPMX19_00798: MPMX19_00798 - Protease 4, at 819,548 to 821,299
_00798
Position (kb) 817
818
819
820 Strain fitness (log2 ratio) -2
-1
0
1 at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.374 kb on + strand, within MPMX19_00796 at 817.374 kb on + strand, within MPMX19_00796 at 817.374 kb on + strand, within MPMX19_00796 at 817.375 kb on - strand, within MPMX19_00796 at 817.375 kb on - strand, within MPMX19_00796 at 817.375 kb on - strand, within MPMX19_00796 at 817.375 kb on - strand, within MPMX19_00796 at 817.677 kb on + strand, within MPMX19_00796 at 817.677 kb on + strand, within MPMX19_00796 at 817.677 kb on + strand, within MPMX19_00796 at 817.677 kb on + strand, within MPMX19_00796 at 817.677 kb on + strand, within MPMX19_00796 at 817.677 kb on + strand, within MPMX19_00796 at 817.677 kb on + strand, within MPMX19_00796 at 817.677 kb on + strand, within MPMX19_00796 at 817.677 kb on + strand, within MPMX19_00796 at 817.678 kb on - strand, within MPMX19_00796 at 817.678 kb on - strand, within MPMX19_00796 at 817.678 kb on - strand, within MPMX19_00796 at 817.860 kb on + strand at 817.860 kb on + strand at 817.860 kb on + strand at 817.860 kb on + strand at 817.860 kb on + strand at 817.860 kb on + strand at 817.860 kb on + strand at 817.860 kb on + strand at 817.860 kb on + strand at 817.861 kb on - strand at 817.861 kb on - strand at 817.861 kb on - strand at 817.861 kb on - strand at 817.861 kb on - strand at 817.861 kb on - strand at 817.861 kb on - strand at 817.861 kb on - strand at 817.861 kb on - strand at 817.861 kb on - strand at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.408 kb on + strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.409 kb on - strand, within MPMX19_00797 at 818.453 kb on + strand, within MPMX19_00797 at 818.453 kb on + strand, within MPMX19_00797 at 818.453 kb on + strand, within MPMX19_00797 at 818.453 kb on + strand, within MPMX19_00797 at 818.453 kb on + strand, within MPMX19_00797 at 818.453 kb on + strand, within MPMX19_00797 at 818.453 kb on + strand, within MPMX19_00797 at 818.454 kb on - strand, within MPMX19_00797 at 818.454 kb on - strand, within MPMX19_00797 at 818.454 kb on - strand, within MPMX19_00797 at 818.454 kb on - strand, within MPMX19_00797 at 818.560 kb on + strand, within MPMX19_00797 at 818.560 kb on + strand, within MPMX19_00797 at 818.560 kb on + strand, within MPMX19_00797 at 818.560 kb on + strand, within MPMX19_00797 at 818.560 kb on + strand, within MPMX19_00797 at 818.560 kb on + strand, within MPMX19_00797 at 818.561 kb on - strand, within MPMX19_00797 at 818.561 kb on - strand, within MPMX19_00797 at 818.561 kb on - strand, within MPMX19_00797 at 818.561 kb on - strand, within MPMX19_00797 at 818.561 kb on - strand, within MPMX19_00797 at 818.585 kb on + strand, within MPMX19_00797 at 818.586 kb on - strand, within MPMX19_00797 at 818.586 kb on - strand, within MPMX19_00797 at 819.224 kb on + strand, within MPMX19_00797 at 819.224 kb on + strand, within MPMX19_00797 at 819.224 kb on + strand, within MPMX19_00797 at 819.224 kb on + strand, within MPMX19_00797 at 819.224 kb on + strand, within MPMX19_00797 at 819.224 kb on + strand, within MPMX19_00797 at 819.224 kb on + strand, within MPMX19_00797 at 819.224 kb on + strand, within MPMX19_00797 at 819.224 kb on + strand, within MPMX19_00797 at 819.224 kb on + strand, within MPMX19_00797 at 819.224 kb on + strand, within MPMX19_00797 at 819.224 kb on + strand, within MPMX19_00797 at 819.225 kb on - strand, within MPMX19_00797 at 819.225 kb on - strand, within MPMX19_00797 at 819.225 kb on - strand, within MPMX19_00797 at 819.225 kb on - strand, within MPMX19_00797 at 819.225 kb on - strand, within MPMX19_00797 at 819.225 kb on - strand, within MPMX19_00797 at 819.225 kb on - strand, within MPMX19_00797 at 819.225 kb on - strand, within MPMX19_00797 at 819.225 kb on - strand, within MPMX19_00797 at 819.225 kb on - strand, within MPMX19_00797 at 819.245 kb on + strand, within MPMX19_00797 at 819.245 kb on + strand, within MPMX19_00797 at 819.246 kb on - strand, within MPMX19_00797 at 819.246 kb on - strand, within MPMX19_00797 at 819.246 kb on - strand, within MPMX19_00797 at 819.246 kb on - strand, within MPMX19_00797 at 819.246 kb on - strand, within MPMX19_00797 at 819.246 kb on - strand, within MPMX19_00797 at 819.278 kb on + strand, within MPMX19_00797 at 819.278 kb on + strand, within MPMX19_00797 at 819.278 kb on + strand, within MPMX19_00797 at 819.278 kb on + strand, within MPMX19_00797 at 819.279 kb on - strand, within MPMX19_00797 at 819.279 kb on - strand, within MPMX19_00797 at 819.279 kb on - strand, within MPMX19_00797 at 819.279 kb on - strand, within MPMX19_00797 at 819.279 kb on - strand, within MPMX19_00797 at 819.936 kb on + strand, within MPMX19_00798 at 819.936 kb on + strand, within MPMX19_00798 at 819.936 kb on + strand, within MPMX19_00798 at 819.936 kb on + strand, within MPMX19_00798 at 819.936 kb on + strand, within MPMX19_00798 at 819.936 kb on + strand, within MPMX19_00798 at 819.936 kb on + strand, within MPMX19_00798 at 819.936 kb on + strand, within MPMX19_00798 at 819.936 kb on + strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 819.937 kb on - strand, within MPMX19_00798 at 820.018 kb on + strand, within MPMX19_00798 at 820.018 kb on + strand, within MPMX19_00798 at 820.019 kb on - strand, within MPMX19_00798 at 820.019 kb on - strand, within MPMX19_00798 at 820.019 kb on - strand, within MPMX19_00798 at 820.019 kb on - strand, within MPMX19_00798 at 820.019 kb on - strand, within MPMX19_00798 at 820.158 kb on + strand, within MPMX19_00798 at 820.158 kb on + strand, within MPMX19_00798 at 820.467 kb on + strand, within MPMX19_00798 at 820.467 kb on + strand, within MPMX19_00798 at 820.467 kb on + strand, within MPMX19_00798 at 820.467 kb on + strand, within MPMX19_00798 at 820.467 kb on + strand, within MPMX19_00798 at 820.468 kb on - strand, within MPMX19_00798 at 820.468 kb on - strand, within MPMX19_00798 at 820.468 kb on - strand, within MPMX19_00798 at 820.468 kb on - strand, within MPMX19_00798 at 820.468 kb on - strand, within MPMX19_00798 at 820.468 kb on - strand, within MPMX19_00798
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 817,059 + MPMX19_00796 0.21 -0.7 817,059 + MPMX19_00796 0.21 +0.1 817,059 + MPMX19_00796 0.21 +0.1 817,059 + MPMX19_00796 0.21 -0.8 817,059 + MPMX19_00796 0.21 -1.2 817,059 + MPMX19_00796 0.21 -1.0 817,060 - MPMX19_00796 0.22 -0.1 817,060 - MPMX19_00796 0.22 -0.8 817,060 - MPMX19_00796 0.22 -0.8 817,060 - MPMX19_00796 0.22 -0.1 817,060 - MPMX19_00796 0.22 +1.2 817,308 + MPMX19_00796 0.44 -0.0 817,308 + MPMX19_00796 0.44 -0.1 817,308 + MPMX19_00796 0.44 +0.7 817,308 + MPMX19_00796 0.44 -0.1 817,308 + MPMX19_00796 0.44 -0.0 817,308 + MPMX19_00796 0.44 +0.2 817,308 + MPMX19_00796 0.44 -1.5 817,308 + MPMX19_00796 0.44 +0.2 817,308 + MPMX19_00796 0.44 -0.5 817,308 + MPMX19_00796 0.44 -0.6 817,308 + MPMX19_00796 0.44 +0.4 817,308 + MPMX19_00796 0.44 +0.2 817,309 - MPMX19_00796 0.44 -0.7 817,309 - MPMX19_00796 0.44 -0.3 817,309 - MPMX19_00796 0.44 +0.3 817,309 - MPMX19_00796 0.44 +0.7 817,309 - MPMX19_00796 0.44 +0.3 817,309 - MPMX19_00796 0.44 -0.6 817,309 - MPMX19_00796 0.44 -2.1 817,309 - MPMX19_00796 0.44 +1.2 817,309 - MPMX19_00796 0.44 +0.3 817,309 - MPMX19_00796 0.44 -1.3 817,309 - MPMX19_00796 0.44 -0.4 817,309 - MPMX19_00796 0.44 -0.0 817,350 + MPMX19_00796 0.48 -0.5 817,350 + MPMX19_00796 0.48 +0.2 817,350 + MPMX19_00796 0.48 -0.4 817,350 + MPMX19_00796 0.48 -0.1 817,350 + MPMX19_00796 0.48 -0.2 817,350 + MPMX19_00796 0.48 +0.8 817,350 + MPMX19_00796 0.48 -2.5 817,351 - MPMX19_00796 0.48 +0.4 817,351 - MPMX19_00796 0.48 -1.0 817,351 - MPMX19_00796 0.48 +0.2 817,351 - MPMX19_00796 0.48 -1.1 817,351 - MPMX19_00796 0.48 -1.1 817,351 - MPMX19_00796 0.48 -0.3 817,351 - MPMX19_00796 0.48 +0.6 817,351 - MPMX19_00796 0.48 -1.4 817,374 + MPMX19_00796 0.50 -1.6 817,374 + MPMX19_00796 0.50 +0.5 817,374 + MPMX19_00796 0.50 -0.2 817,375 - MPMX19_00796 0.51 -0.1 817,375 - MPMX19_00796 0.51 +0.2 817,375 - MPMX19_00796 0.51 -0.4 817,375 - MPMX19_00796 0.51 +0.6 817,677 + MPMX19_00796 0.78 -0.7 817,677 + MPMX19_00796 0.78 -0.5 817,677 + MPMX19_00796 0.78 -2.0 817,677 + MPMX19_00796 0.78 +0.6 817,677 + MPMX19_00796 0.78 +1.1 817,677 + MPMX19_00796 0.78 -0.0 817,677 + MPMX19_00796 0.78 +0.5 817,677 + MPMX19_00796 0.78 -0.1 817,677 + MPMX19_00796 0.78 -0.2 817,678 - 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MPMX19_00798 0.22 -0.2 819,937 - MPMX19_00798 0.22 -0.5 819,937 - MPMX19_00798 0.22 +1.1 819,937 - MPMX19_00798 0.22 +0.5 819,937 - MPMX19_00798 0.22 +1.5 819,937 - MPMX19_00798 0.22 +0.2 819,937 - MPMX19_00798 0.22 -1.5 819,937 - MPMX19_00798 0.22 -0.1 819,937 - MPMX19_00798 0.22 -1.5 819,937 - MPMX19_00798 0.22 +0.5 819,937 - MPMX19_00798 0.22 -0.6 819,937 - MPMX19_00798 0.22 +0.7 819,937 - MPMX19_00798 0.22 -0.6 819,937 - MPMX19_00798 0.22 +0.2 819,937 - MPMX19_00798 0.22 +0.7 819,937 - MPMX19_00798 0.22 -0.5 819,937 - MPMX19_00798 0.22 -0.1 820,018 + MPMX19_00798 0.27 -0.3 820,018 + MPMX19_00798 0.27 -1.5 820,019 - MPMX19_00798 0.27 -1.3 820,019 - MPMX19_00798 0.27 -1.7 820,019 - MPMX19_00798 0.27 +1.2 820,019 - MPMX19_00798 0.27 -1.1 820,019 - MPMX19_00798 0.27 +0.2 820,158 + MPMX19_00798 0.35 -1.1 820,158 + MPMX19_00798 0.35 -1.1 820,467 + MPMX19_00798 0.52 -1.1 820,467 + MPMX19_00798 0.52 -0.2 820,467 + MPMX19_00798 0.52 -1.3 820,467 + MPMX19_00798 0.52 -0.3 820,467 + MPMX19_00798 0.52 +0.7 820,468 - 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Or see this region's nucleotide sequence