Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00787 and MPMX19_00788 are separated by 143 nucleotides MPMX19_00788 and MPMX19_00789 are separated by 68 nucleotides MPMX19_00789 and MPMX19_00790 are separated by 6 nucleotides MPMX19_00790 and MPMX19_00791 are separated by 121 nucleotides
MPMX19_00787: MPMX19_00787 - Sensor histidine kinase RcsC, at 808,576 to 809,934
_00787
MPMX19_00788: MPMX19_00788 - Chemotaxis protein CheY, at 810,078 to 810,476
_00788
MPMX19_00789: MPMX19_00789 - hypothetical protein, at 810,545 to 810,823
_00789
MPMX19_00790: MPMX19_00790 - hypothetical protein, at 810,830 to 811,438
_00790
MPMX19_00791: MPMX19_00791 - hypothetical protein, at 811,560 to 812,009
_00791
Position (kb) 810
811 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 809.947 kb on + strand at 809.948 kb on - strand at 809.966 kb on + strand at 809.966 kb on + strand at 809.982 kb on + strand at 809.982 kb on + strand at 809.983 kb on - strand at 809.983 kb on - strand at 809.983 kb on - strand at 809.983 kb on - strand at 809.983 kb on - strand at 810.034 kb on + strand at 810.035 kb on - strand at 810.053 kb on - strand at 810.053 kb on - strand at 810.053 kb on - strand at 810.053 kb on - strand at 810.077 kb on + strand at 810.077 kb on + strand at 810.077 kb on + strand at 810.077 kb on + strand at 810.077 kb on + strand at 810.078 kb on - strand at 810.078 kb on - strand at 810.093 kb on + strand at 810.094 kb on - strand at 810.094 kb on - strand at 810.094 kb on - strand at 810.216 kb on + strand, within MPMX19_00788 at 810.216 kb on + strand, within MPMX19_00788 at 810.216 kb on + strand, within MPMX19_00788 at 810.216 kb on + strand, within MPMX19_00788 at 810.216 kb on + strand, within MPMX19_00788 at 810.216 kb on + strand, within MPMX19_00788 at 810.216 kb on + strand, within MPMX19_00788 at 810.216 kb on + strand, within MPMX19_00788 at 810.216 kb on + strand, within MPMX19_00788 at 810.216 kb on + strand, within MPMX19_00788 at 810.216 kb on + strand, within MPMX19_00788 at 810.216 kb on + strand, within MPMX19_00788 at 810.217 kb on - strand, within MPMX19_00788 at 810.217 kb on - strand, within MPMX19_00788 at 810.217 kb on - strand, within MPMX19_00788 at 810.217 kb on - strand, within MPMX19_00788 at 810.217 kb on - strand, within MPMX19_00788 at 810.217 kb on - strand, within MPMX19_00788 at 810.217 kb on - strand, within MPMX19_00788 at 810.217 kb on - strand, within MPMX19_00788 at 810.217 kb on - strand, within MPMX19_00788 at 810.217 kb on - strand, within MPMX19_00788 at 810.217 kb on - strand, within MPMX19_00788 at 810.692 kb on + strand, within MPMX19_00789 at 810.692 kb on + strand, within MPMX19_00789 at 810.692 kb on + strand, within MPMX19_00789 at 810.692 kb on + strand, within MPMX19_00789 at 810.692 kb on + strand, within MPMX19_00789 at 810.692 kb on + strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.693 kb on - strand, within MPMX19_00789 at 810.701 kb on + strand, within MPMX19_00789 at 810.701 kb on + strand, within MPMX19_00789 at 810.701 kb on + strand, within MPMX19_00789 at 810.701 kb on + strand, within MPMX19_00789 at 810.701 kb on + strand, within MPMX19_00789 at 810.701 kb on + strand, within MPMX19_00789 at 810.701 kb on + strand, within MPMX19_00789 at 810.701 kb on + strand, within MPMX19_00789 at 810.701 kb on + strand, within MPMX19_00789 at 810.701 kb on + strand, within MPMX19_00789 at 810.701 kb on + strand, within MPMX19_00789 at 810.701 kb on + strand, within MPMX19_00789 at 810.701 kb on + strand, within MPMX19_00789 at 810.701 kb on + strand, within MPMX19_00789 at 810.702 kb on - strand, within MPMX19_00789 at 810.702 kb on - strand, within MPMX19_00789 at 810.702 kb on - strand, within MPMX19_00789 at 810.702 kb on - strand, within MPMX19_00789 at 810.702 kb on - strand, within MPMX19_00789 at 810.702 kb on - strand, within MPMX19_00789 at 810.702 kb on - strand, within MPMX19_00789 at 810.702 kb on - strand, within MPMX19_00789 at 810.702 kb on - strand, within MPMX19_00789 at 810.702 kb on - strand, within MPMX19_00789 at 810.702 kb on - strand, within MPMX19_00789 at 810.702 kb on - strand, within MPMX19_00789 at 810.702 kb on - strand, within MPMX19_00789 at 810.702 kb on - strand, within MPMX19_00789 at 810.704 kb on + strand, within MPMX19_00789 at 810.704 kb on + strand, within MPMX19_00789 at 810.704 kb on + strand, within MPMX19_00789 at 810.704 kb on + strand, within MPMX19_00789 at 810.704 kb on + strand, within MPMX19_00789 at 810.704 kb on + strand, within MPMX19_00789 at 810.704 kb on + strand, within MPMX19_00789 at 810.704 kb on + strand, within MPMX19_00789 at 810.705 kb on - strand, within MPMX19_00789 at 810.705 kb on - strand, within MPMX19_00789 at 810.705 kb on - strand, within MPMX19_00789 at 810.705 kb on - strand, within MPMX19_00789 at 810.705 kb on - strand, within MPMX19_00789 at 810.831 kb on + strand at 810.831 kb on + strand at 810.969 kb on + strand, within MPMX19_00790 at 810.970 kb on - strand, within MPMX19_00790 at 810.970 kb on - strand, within MPMX19_00790 at 811.443 kb on + strand at 811.444 kb on - strand at 811.444 kb on - strand at 811.475 kb on + strand at 811.475 kb on + strand at 811.475 kb on + strand at 811.475 kb on + strand at 811.475 kb on + strand at 811.475 kb on + strand at 811.475 kb on + strand at 811.475 kb on + strand at 811.475 kb on + strand at 811.475 kb on + strand at 811.475 kb on + strand at 811.476 kb on - strand at 811.476 kb on - strand at 811.476 kb on - strand at 811.476 kb on - strand at 811.476 kb on - strand at 811.476 kb on - strand at 811.476 kb on - strand at 811.478 kb on + strand at 811.478 kb on + strand at 811.478 kb on + strand at 811.478 kb on + strand at 811.479 kb on - strand at 811.479 kb on - strand at 811.479 kb on - strand at 811.479 kb on - strand at 811.479 kb on - strand at 811.479 kb on - strand at 811.479 kb on - strand at 811.479 kb on - strand at 811.551 kb on + strand at 811.551 kb on + strand at 811.551 kb on + strand at 811.551 kb on + strand at 811.551 kb on + strand at 811.551 kb on + strand at 811.551 kb on + strand at 811.551 kb on + strand at 811.551 kb on + strand at 811.551 kb on + strand at 811.551 kb on + strand at 811.551 kb on + strand at 811.551 kb on + strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.552 kb on - strand at 811.561 kb on + strand at 811.561 kb on + strand at 811.561 kb on + strand at 811.561 kb on + strand at 811.561 kb on + strand at 811.561 kb on + strand at 811.562 kb on - strand at 811.562 kb on - strand at 811.562 kb on - strand at 811.562 kb on - strand at 811.562 kb on - strand at 811.562 kb on - strand at 811.562 kb on - strand at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.690 kb on + strand, within MPMX19_00791 at 811.691 kb on - strand, within MPMX19_00791 at 811.691 kb on - strand, within MPMX19_00791 at 811.691 kb on - strand, within MPMX19_00791 at 811.691 kb on - strand, within MPMX19_00791 at 811.691 kb on - strand, within MPMX19_00791 at 811.691 kb on - strand, within MPMX19_00791 at 811.691 kb on - strand, within MPMX19_00791 at 811.691 kb on - strand, within MPMX19_00791 at 811.691 kb on - strand, within MPMX19_00791 at 811.691 kb on - strand, within MPMX19_00791 at 811.691 kb on - strand, within MPMX19_00791 at 811.691 kb on - strand, within MPMX19_00791 at 811.691 kb on - strand, within MPMX19_00791
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 809,947 + +1.9 809,948 - -1.5 809,966 + -0.1 809,966 + -1.8 809,982 + +0.2 809,982 + +0.5 809,983 - -0.5 809,983 - +0.2 809,983 - +1.2 809,983 - -0.3 809,983 - +0.2 810,034 + -0.5 810,035 - -0.5 810,053 - -1.4 810,053 - -0.0 810,053 - -1.3 810,053 - +2.5 810,077 + -1.3 810,077 + -0.0 810,077 + +0.5 810,077 + -0.8 810,077 + +0.2 810,078 - -0.7 810,078 - -0.8 810,093 + -2.3 810,094 - -0.7 810,094 - +1.5 810,094 - -2.3 810,216 + MPMX19_00788 0.35 +0.3 810,216 + MPMX19_00788 0.35 +1.5 810,216 + MPMX19_00788 0.35 +0.3 810,216 + MPMX19_00788 0.35 -0.7 810,216 + MPMX19_00788 0.35 -0.1 810,216 + MPMX19_00788 0.35 +0.3 810,216 + MPMX19_00788 0.35 +1.6 810,216 + MPMX19_00788 0.35 +1.6 810,216 + MPMX19_00788 0.35 -1.0 810,216 + MPMX19_00788 0.35 -1.2 810,216 + MPMX19_00788 0.35 -1.8 810,216 + MPMX19_00788 0.35 +1.0 810,217 - MPMX19_00788 0.35 -0.5 810,217 - MPMX19_00788 0.35 -1.0 810,217 - MPMX19_00788 0.35 -1.5 810,217 - MPMX19_00788 0.35 -1.1 810,217 - MPMX19_00788 0.35 +1.3 810,217 - MPMX19_00788 0.35 -0.7 810,217 - MPMX19_00788 0.35 -1.0 810,217 - MPMX19_00788 0.35 -0.5 810,217 - MPMX19_00788 0.35 -1.0 810,217 - MPMX19_00788 0.35 -0.8 810,217 - MPMX19_00788 0.35 -1.1 810,692 + MPMX19_00789 0.53 -0.5 810,692 + MPMX19_00789 0.53 -2.0 810,692 + MPMX19_00789 0.53 -0.5 810,692 + MPMX19_00789 0.53 -0.2 810,692 + MPMX19_00789 0.53 -2.1 810,692 + MPMX19_00789 0.53 -1.3 810,693 - MPMX19_00789 0.53 -0.5 810,693 - MPMX19_00789 0.53 -2.7 810,693 - MPMX19_00789 0.53 +0.6 810,693 - MPMX19_00789 0.53 -0.8 810,693 - MPMX19_00789 0.53 +0.9 810,693 - MPMX19_00789 0.53 -0.6 810,693 - MPMX19_00789 0.53 -0.1 810,693 - MPMX19_00789 0.53 -1.5 810,693 - MPMX19_00789 0.53 +1.2 810,693 - MPMX19_00789 0.53 +0.4 810,693 - MPMX19_00789 0.53 -0.6 810,693 - MPMX19_00789 0.53 +0.2 810,693 - MPMX19_00789 0.53 +0.9 810,693 - MPMX19_00789 0.53 +0.5 810,693 - MPMX19_00789 0.53 -0.5 810,701 + MPMX19_00789 0.56 -0.3 810,701 + MPMX19_00789 0.56 -0.5 810,701 + MPMX19_00789 0.56 +0.3 810,701 + MPMX19_00789 0.56 +0.3 810,701 + MPMX19_00789 0.56 -0.5 810,701 + MPMX19_00789 0.56 +0.1 810,701 + MPMX19_00789 0.56 -1.8 810,701 + MPMX19_00789 0.56 -1.3 810,701 + MPMX19_00789 0.56 -1.2 810,701 + MPMX19_00789 0.56 -0.1 810,701 + MPMX19_00789 0.56 +0.1 810,701 + MPMX19_00789 0.56 -1.4 810,701 + MPMX19_00789 0.56 -0.8 810,701 + MPMX19_00789 0.56 -0.3 810,702 - MPMX19_00789 0.56 -0.2 810,702 - MPMX19_00789 0.56 -0.1 810,702 - MPMX19_00789 0.56 -0.3 810,702 - MPMX19_00789 0.56 -0.2 810,702 - MPMX19_00789 0.56 -2.8 810,702 - MPMX19_00789 0.56 +0.5 810,702 - MPMX19_00789 0.56 -1.2 810,702 - MPMX19_00789 0.56 -1.2 810,702 - MPMX19_00789 0.56 +0.1 810,702 - MPMX19_00789 0.56 +1.1 810,702 - MPMX19_00789 0.56 +0.8 810,702 - MPMX19_00789 0.56 +0.4 810,702 - MPMX19_00789 0.56 +0.0 810,702 - MPMX19_00789 0.56 -1.1 810,704 + MPMX19_00789 0.57 +0.3 810,704 + MPMX19_00789 0.57 +1.6 810,704 + MPMX19_00789 0.57 +0.6 810,704 + MPMX19_00789 0.57 +0.6 810,704 + MPMX19_00789 0.57 -1.1 810,704 + MPMX19_00789 0.57 -0.6 810,704 + MPMX19_00789 0.57 -0.1 810,704 + MPMX19_00789 0.57 -0.9 810,705 - MPMX19_00789 0.57 -2.1 810,705 - MPMX19_00789 0.57 +1.1 810,705 - MPMX19_00789 0.57 -0.6 810,705 - MPMX19_00789 0.57 -1.0 810,705 - MPMX19_00789 0.57 +0.7 810,831 + -0.1 810,831 + +1.0 810,969 + MPMX19_00790 0.23 -0.1 810,970 - MPMX19_00790 0.23 -1.2 810,970 - MPMX19_00790 0.23 -0.5 811,443 + +0.1 811,444 - -0.7 811,444 - -1.1 811,475 + -0.6 811,475 + +0.1 811,475 + -0.0 811,475 + -0.5 811,475 + -1.5 811,475 + +0.4 811,475 + +0.5 811,475 + -2.3 811,475 + -1.6 811,475 + -0.6 811,475 + +0.5 811,476 - -0.4 811,476 - -0.3 811,476 - -0.6 811,476 - -1.1 811,476 - +0.4 811,476 - -0.3 811,476 - -0.3 811,478 + +0.8 811,478 + -0.5 811,478 + -1.3 811,478 + -0.1 811,479 - -0.1 811,479 - +0.3 811,479 - -0.7 811,479 - -0.8 811,479 - -0.3 811,479 - -0.9 811,479 - +0.2 811,479 - -0.5 811,551 + +0.5 811,551 + -0.3 811,551 + -0.2 811,551 + -1.3 811,551 + +0.8 811,551 + +0.5 811,551 + -0.8 811,551 + -0.6 811,551 + +0.5 811,551 + -0.8 811,551 + +0.3 811,551 + -0.7 811,551 + -0.3 811,552 - -1.7 811,552 - -0.8 811,552 - +0.2 811,552 - -0.5 811,552 - -2.8 811,552 - -0.5 811,552 - +0.8 811,552 - -1.7 811,552 - -0.5 811,552 - +0.8 811,552 - -0.2 811,552 - -1.0 811,552 - +0.7 811,552 - -0.1 811,552 - +0.9 811,552 - -1.1 811,552 - -1.6 811,552 - +0.8 811,561 + -0.2 811,561 + +0.7 811,561 + -0.2 811,561 + -0.3 811,561 + +1.4 811,561 + -0.4 811,562 - +1.7 811,562 - -0.7 811,562 - -2.9 811,562 - +0.2 811,562 - -0.4 811,562 - +1.6 811,562 - +0.5 811,690 + MPMX19_00791 0.29 -0.7 811,690 + MPMX19_00791 0.29 -0.1 811,690 + MPMX19_00791 0.29 +0.5 811,690 + MPMX19_00791 0.29 +0.1 811,690 + MPMX19_00791 0.29 -0.0 811,690 + MPMX19_00791 0.29 +0.3 811,690 + MPMX19_00791 0.29 +0.1 811,690 + MPMX19_00791 0.29 -0.7 811,690 + MPMX19_00791 0.29 +0.9 811,690 + MPMX19_00791 0.29 -1.0 811,690 + MPMX19_00791 0.29 -1.5 811,690 + MPMX19_00791 0.29 +0.5 811,690 + MPMX19_00791 0.29 -0.5 811,690 + MPMX19_00791 0.29 -0.1 811,690 + MPMX19_00791 0.29 -1.1 811,690 + MPMX19_00791 0.29 -1.6 811,690 + MPMX19_00791 0.29 +0.0 811,690 + MPMX19_00791 0.29 +0.9 811,691 - MPMX19_00791 0.29 +0.7 811,691 - MPMX19_00791 0.29 -0.3 811,691 - MPMX19_00791 0.29 +0.7 811,691 - MPMX19_00791 0.29 -0.2 811,691 - MPMX19_00791 0.29 -0.5 811,691 - MPMX19_00791 0.29 -0.1 811,691 - MPMX19_00791 0.29 +0.3 811,691 - MPMX19_00791 0.29 -1.3 811,691 - MPMX19_00791 0.29 -0.3 811,691 - MPMX19_00791 0.29 -1.3 811,691 - MPMX19_00791 0.29 -1.1 811,691 - MPMX19_00791 0.29 +0.4 811,691 - MPMX19_00791 0.29 -0.1
Or see this region's nucleotide sequence