Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00703 and MPMX19_00704 are separated by 149 nucleotides MPMX19_00704 and MPMX19_00705 are separated by 264 nucleotides MPMX19_00705 and MPMX19_00706 overlap by 1 nucleotides
MPMX19_00703: MPMX19_00703 - Tol-Pal system protein TolB, at 723,658 to 725,010
_00703
MPMX19_00704: MPMX19_00704 - Peptidoglycan-associated lipoprotein, at 725,160 to 725,630
_00704
MPMX19_00705: MPMX19_00705 - Cell division coordinator CpoB, at 725,895 to 726,749
_00705
MPMX19_00706: MPMX19_00706 - tRNA(Ile)-lysidine synthase, at 726,749 to 728,104
_00706
Position (kb) 725
726
727 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 725.022 kb on + strand at 725.022 kb on + strand at 725.628 kb on + strand at 725.628 kb on + strand at 725.629 kb on - strand at 725.629 kb on - strand at 725.629 kb on - strand at 725.629 kb on - strand at 725.629 kb on - strand at 725.727 kb on + strand at 725.728 kb on - strand at 725.728 kb on - strand at 725.728 kb on - strand at 725.728 kb on - strand at 725.806 kb on + strand at 725.806 kb on + strand at 725.807 kb on - strand at 725.831 kb on + strand at 725.831 kb on + strand at 725.888 kb on + strand at 725.888 kb on + strand at 725.888 kb on + strand at 726.414 kb on + strand, within MPMX19_00705 at 726.414 kb on + strand, within MPMX19_00705 at 726.414 kb on + strand, within MPMX19_00705 at 726.507 kb on + strand, within MPMX19_00705 at 726.507 kb on + strand, within MPMX19_00705 at 726.507 kb on + strand, within MPMX19_00705 at 726.507 kb on + strand, within MPMX19_00705 at 726.507 kb on + strand, within MPMX19_00705 at 726.507 kb on + strand, within MPMX19_00705 at 726.507 kb on + strand, within MPMX19_00705 at 726.507 kb on + strand, within MPMX19_00705 at 726.507 kb on + strand, within MPMX19_00705 at 726.510 kb on + strand, within MPMX19_00705 at 726.510 kb on + strand, within MPMX19_00705 at 726.510 kb on + strand, within MPMX19_00705 at 726.510 kb on + strand, within MPMX19_00705 at 726.510 kb on + strand, within MPMX19_00705 at 726.510 kb on + strand, within MPMX19_00705 at 726.510 kb on + strand, within MPMX19_00705 at 726.510 kb on + strand, within MPMX19_00705
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 725,022 + -0.2 725,022 + -1.3 725,628 + +0.4 725,628 + -2.0 725,629 - -0.5 725,629 - +0.0 725,629 - -0.1 725,629 - +0.9 725,629 - +0.1 725,727 + +0.3 725,728 - -0.7 725,728 - -1.3 725,728 - +0.4 725,728 - -0.1 725,806 + +0.3 725,806 + -0.7 725,807 - +0.9 725,831 + -1.4 725,831 + -0.5 725,888 + -1.1 725,888 + -0.1 725,888 + +0.4 726,414 + MPMX19_00705 0.61 -1.3 726,414 + MPMX19_00705 0.61 -0.8 726,414 + MPMX19_00705 0.61 -0.8 726,507 + MPMX19_00705 0.72 -1.5 726,507 + MPMX19_00705 0.72 -0.8 726,507 + MPMX19_00705 0.72 -0.1 726,507 + MPMX19_00705 0.72 -0.5 726,507 + MPMX19_00705 0.72 -1.5 726,507 + MPMX19_00705 0.72 -2.8 726,507 + MPMX19_00705 0.72 -0.1 726,507 + MPMX19_00705 0.72 +1.5 726,507 + MPMX19_00705 0.72 -1.3 726,510 + MPMX19_00705 0.72 -2.6 726,510 + MPMX19_00705 0.72 +0.5 726,510 + MPMX19_00705 0.72 -0.8 726,510 + MPMX19_00705 0.72 -0.1 726,510 + MPMX19_00705 0.72 -1.3 726,510 + MPMX19_00705 0.72 -1.8 726,510 + MPMX19_00705 0.72 -0.1 726,510 + MPMX19_00705 0.72 -2.1
Or see this region's nucleotide sequence