Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00698

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00696 and MPMX19_00697 are separated by 3 nucleotidesMPMX19_00697 and MPMX19_00698 overlap by 4 nucleotidesMPMX19_00698 and MPMX19_00699 overlap by 8 nucleotidesMPMX19_00699 and MPMX19_00700 are separated by 73 nucleotides MPMX19_00696: MPMX19_00696 - Crossover junction endodeoxyribonuclease RuvC, at 717,852 to 718,940 _00696 MPMX19_00697: MPMX19_00697 - Holliday junction ATP-dependent DNA helicase RuvA, at 718,944 to 719,570 _00697 MPMX19_00698: MPMX19_00698 - Holliday junction ATP-dependent DNA helicase RuvB, at 719,567 to 720,640 _00698 MPMX19_00699: MPMX19_00699 - Acyl-CoA thioesterase YbgC, at 720,633 to 721,121 _00699 MPMX19_00700: MPMX19_00700 - Tol-Pal system protein TolQ, at 721,195 to 721,929 _00700 Position (kb) 719 720 721Strain fitness (log2 ratio) -2 -1 0 1 2at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.633 kb on + strand, within MPMX19_00696at 718.633 kb on + strand, within MPMX19_00696at 718.633 kb on + strand, within MPMX19_00696at 719.019 kb on + strand, within MPMX19_00697at 719.460 kb on + strand, within MPMX19_00697at 719.923 kb on + strand, within MPMX19_00698at 720.119 kb on + strand, within MPMX19_00698at 720.396 kb on - strand, within MPMX19_00698at 720.479 kb on + strand, within MPMX19_00698at 720.697 kb on - strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.714 kb on + strand, within MPMX19_00699at 720.714 kb on + strand, within MPMX19_00699at 720.714 kb on + strand, within MPMX19_00699at 720.714 kb on + strand, within MPMX19_00699at 720.715 kb on - strand, within MPMX19_00699at 720.715 kb on - strand, within MPMX19_00699at 720.715 kb on - strand, within MPMX19_00699at 720.715 kb on - strand, within MPMX19_00699at 720.744 kb on + strand, within MPMX19_00699at 720.744 kb on + strand, within MPMX19_00699at 720.744 kb on + strand, within MPMX19_00699at 720.744 kb on + strand, within MPMX19_00699at 720.744 kb on + strand, within MPMX19_00699at 720.744 kb on + strand, within MPMX19_00699at 720.744 kb on + strand, within MPMX19_00699at 720.745 kb on - strand, within MPMX19_00699at 720.745 kb on - strand, within MPMX19_00699at 720.745 kb on - strand, within MPMX19_00699at 720.756 kb on + strand, within MPMX19_00699at 720.756 kb on + strand, within MPMX19_00699at 720.756 kb on + strand, within MPMX19_00699at 720.756 kb on + strand, within MPMX19_00699at 720.756 kb on + strand, within MPMX19_00699at 720.757 kb on - strand, within MPMX19_00699at 720.757 kb on - strand, within MPMX19_00699at 720.757 kb on - strand, within MPMX19_00699at 720.757 kb on - strand, within MPMX19_00699at 720.757 kb on - strand, within MPMX19_00699at 720.795 kb on + strand, within MPMX19_00699at 720.795 kb on + strand, within MPMX19_00699at 720.795 kb on + strand, within MPMX19_00699at 720.795 kb on + strand, within MPMX19_00699at 720.796 kb on - strand, within MPMX19_00699at 720.796 kb on - strand, within MPMX19_00699at 720.796 kb on - strand, within MPMX19_00699at 720.865 kb on + strand, within MPMX19_00699at 721.027 kb on + strand, within MPMX19_00699at 721.138 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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718,631 + MPMX19_00696 0.72 +0.9
718,631 + MPMX19_00696 0.72 -0.1
718,631 + MPMX19_00696 0.72 -0.1
718,631 + MPMX19_00696 0.72 -0.8
718,631 + MPMX19_00696 0.72 -0.1
718,631 + MPMX19_00696 0.72 -0.1
718,631 + MPMX19_00696 0.72 -1.1
718,631 + MPMX19_00696 0.72 +0.5
718,631 + MPMX19_00696 0.72 +0.5
718,633 + MPMX19_00696 0.72 -1.1
718,633 + MPMX19_00696 0.72 -2.2
718,633 + MPMX19_00696 0.72 -1.5
719,019 + MPMX19_00697 0.12 -0.1
719,460 + MPMX19_00697 0.82 -0.1
719,923 + MPMX19_00698 0.33 -0.8
720,119 + MPMX19_00698 0.51 -1.3
720,396 - MPMX19_00698 0.77 +0.5
720,479 + MPMX19_00698 0.85 -0.5
720,697 - MPMX19_00699 0.13 +0.2
720,711 + MPMX19_00699 0.16 -0.5
720,711 + MPMX19_00699 0.16 -0.7
720,711 + MPMX19_00699 0.16 -0.6
720,711 + MPMX19_00699 0.16 -0.2
720,711 + MPMX19_00699 0.16 -1.4
720,711 + MPMX19_00699 0.16 -0.9
720,711 + MPMX19_00699 0.16 -0.5
720,711 + MPMX19_00699 0.16 +0.7
720,711 + MPMX19_00699 0.16 -1.0
720,711 + MPMX19_00699 0.16 -0.1
720,712 - MPMX19_00699 0.16 -1.7
720,712 - MPMX19_00699 0.16 +1.2
720,712 - MPMX19_00699 0.16 +0.2
720,712 - MPMX19_00699 0.16 -2.0
720,712 - MPMX19_00699 0.16 -2.0
720,712 - MPMX19_00699 0.16 +1.1
720,712 - MPMX19_00699 0.16 +2.2
720,712 - MPMX19_00699 0.16 -0.5
720,712 - MPMX19_00699 0.16 -2.6
720,712 - MPMX19_00699 0.16 -0.5
720,712 - MPMX19_00699 0.16 -0.2
720,712 - MPMX19_00699 0.16 -0.7
720,714 + MPMX19_00699 0.17 -0.3
720,714 + MPMX19_00699 0.17 +0.5
720,714 + MPMX19_00699 0.17 -0.2
720,714 + MPMX19_00699 0.17 -0.8
720,715 - MPMX19_00699 0.17 -0.8
720,715 - MPMX19_00699 0.17 -0.8
720,715 - MPMX19_00699 0.17 -0.7
720,715 - MPMX19_00699 0.17 +0.6
720,744 + MPMX19_00699 0.23 -0.6
720,744 + MPMX19_00699 0.23 -0.9
720,744 + MPMX19_00699 0.23 -1.0
720,744 + MPMX19_00699 0.23 -1.2
720,744 + MPMX19_00699 0.23 +0.7
720,744 + MPMX19_00699 0.23 -1.6
720,744 + MPMX19_00699 0.23 -0.2
720,745 - MPMX19_00699 0.23 +0.5
720,745 - MPMX19_00699 0.23 +0.9
720,745 - MPMX19_00699 0.23 -2.1
720,756 + MPMX19_00699 0.25 -0.2
720,756 + MPMX19_00699 0.25 -1.5
720,756 + MPMX19_00699 0.25 -0.8
720,756 + MPMX19_00699 0.25 -0.5
720,756 + MPMX19_00699 0.25 -1.1
720,757 - MPMX19_00699 0.25 +0.2
720,757 - MPMX19_00699 0.25 +0.5
720,757 - MPMX19_00699 0.25 +1.1
720,757 - MPMX19_00699 0.25 -0.8
720,757 - MPMX19_00699 0.25 -0.5
720,795 + MPMX19_00699 0.33 -2.0
720,795 + MPMX19_00699 0.33 -0.8
720,795 + MPMX19_00699 0.33 +0.3
720,795 + MPMX19_00699 0.33 +0.2
720,796 - MPMX19_00699 0.33 -0.1
720,796 - MPMX19_00699 0.33 +1.1
720,796 - MPMX19_00699 0.33 -0.5
720,865 + MPMX19_00699 0.47 -2.0
721,027 + MPMX19_00699 0.81 +0.8
721,138 + +1.2

Or see this region's nucleotide sequence