Strain Fitness in Variovorax sp. SCN45 around GFF7342

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
9,322	-		GFF7340	0.49	-1.8
9,322	-		GFF7340	0.49	+2.3
9,427	-		GFF7340	0.59	+0.1
9,427	-		GFF7340	0.59	-1.1
9,594	+		GFF7340	0.74	+0.1
9,625	-		GFF7340	0.77	-0.5
9,625	-		GFF7340	0.77	-0.6
9,842	-				-0.4
9,975	+				-2.5
9,976	-				-0.1
9,976	-				-0.3
10,042	+				-0.9
10,043	-				+1.0
10,525	+		GFF7342	0.22	+0.9
10,552	+		GFF7342	0.24	-1.0
10,553	-		GFF7342	0.24	-0.8
11,020	+		GFF7342	0.56	-0.5
11,021	-		GFF7342	0.56	-0.4
11,021	-		GFF7342	0.56	+0.2
11,029	+		GFF7342	0.56	+0.2
11,029	+		GFF7342	0.56	-0.4
11,029	+		GFF7342	0.56	+2.2
11,443	+		GFF7342	0.85	-1.0
11,443	+		GFF7342	0.85	+1.0
11,443	+		GFF7342	0.85	+0.8
11,444	-		GFF7342	0.85	+1.4
11,617	+				+0.0
11,617	+				+0.5
11,741	+				-0.6
11,742	-				-0.3
11,856	+				+0.2
12,556	-		GFF7344	0.33	-0.8
12,605	+		GFF7344	0.38	+1.4
12,605	+		GFF7344	0.38	+0.3
12,606	-		GFF7344	0.38	-0.4