Strain Fitness in Variovorax sp. SCN45 around GFF724

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF722 and GFF723 are separated by 76 nucleotidesGFF723 and GFF724 overlap by 4 nucleotidesGFF724 and GFF725 are separated by 96 nucleotides GFF722 - hypothetical protein, at 779,271 to 780,047 GFF722 GFF723 - RNA polymerase ECF-type sigma factor, at 780,124 to 780,633 GFF723 GFF724 - Fe2+-dicitrate sensor, membrane component, at 780,630 to 781,622 GFF724 GFF725 - TonB-dependent siderophore receptor, at 781,719 to 784,223 GFF725 Position (kb) 780 781 782Strain fitness (log2 ratio) -2 -1 0 1 2at 779.730 kb on + strand, within GFF722at 779.731 kb on - strand, within GFF722at 779.731 kb on - strand, within GFF722at 779.731 kb on - strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.851 kb on - strand, within GFF722at 779.851 kb on - strand, within GFF722at 779.925 kb on + strand, within GFF722at 779.926 kb on - strand, within GFF722at 779.926 kb on - strand, within GFF722at 779.928 kb on + strand, within GFF722at 779.928 kb on + strand, within GFF722at 779.928 kb on + strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 780.169 kb on + strandat 780.169 kb on + strandat 780.169 kb on + strandat 780.169 kb on + strandat 780.170 kb on - strandat 780.170 kb on - strandat 780.170 kb on - strandat 780.284 kb on + strand, within GFF723at 780.284 kb on + strand, within GFF723at 780.285 kb on - strand, within GFF723at 780.285 kb on - strand, within GFF723at 780.285 kb on - strand, within GFF723at 780.313 kb on + strand, within GFF723at 780.313 kb on + strand, within GFF723at 780.313 kb on + strand, within GFF723at 780.538 kb on + strand, within GFF723at 780.539 kb on - strand, within GFF723at 780.539 kb on - strand, within GFF723at 780.539 kb on - strand, within GFF723at 780.589 kb on + strandat 780.589 kb on + strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.927 kb on + strand, within GFF724at 780.928 kb on - strand, within GFF724at 781.410 kb on + strand, within GFF724at 781.410 kb on + strand, within GFF724at 781.410 kb on + strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.539 kb on + strandat 781.539 kb on + strandat 781.540 kb on - strandat 781.540 kb on - strandat 781.597 kb on - strandat 782.004 kb on + strand, within GFF725at 782.005 kb on - strand, within GFF725at 782.080 kb on - strand, within GFF725at 782.208 kb on + strand, within GFF725at 782.208 kb on + strand, within GFF725at 782.208 kb on + strand, within GFF725at 782.208 kb on + strand, within GFF725at 782.209 kb on - strand, within GFF725at 782.209 kb on - strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.359 kb on - strand, within GFF725at 782.359 kb on - strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.383 kb on - strand, within GFF725at 782.383 kb on - strand, within GFF725at 782.383 kb on - strand, within GFF725at 782.383 kb on - strand, within GFF725at 782.388 kb on + strand, within GFF725at 782.388 kb on + strand, within GFF725at 782.388 kb on + strand, within GFF725at 782.388 kb on + strand, within GFF725at 782.415 kb on + strand, within GFF725at 782.415 kb on + strand, within GFF725at 782.415 kb on + strand, within GFF725at 782.416 kb on - strand, within GFF725at 782.445 kb on + strand, within GFF725at 782.445 kb on + strand, within GFF725at 782.445 kb on + strand, within GFF725at 782.445 kb on + strand, within GFF725at 782.446 kb on - strand, within GFF725

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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779,730 + GFF722 0.59 -1.5
779,731 - GFF722 0.59 +0.5
779,731 - GFF722 0.59 +0.1
779,731 - GFF722 0.59 +0.3
779,850 + GFF722 0.75 +0.8
779,850 + GFF722 0.75 +0.1
779,850 + GFF722 0.75 +0.3
779,850 + GFF722 0.75 +0.1
779,850 + GFF722 0.75 -1.3
779,851 - GFF722 0.75 -0.0
779,851 - GFF722 0.75 +0.3
779,925 + GFF722 0.84 -0.1
779,926 - GFF722 0.84 -0.0
779,926 - GFF722 0.84 -1.1
779,928 + GFF722 0.85 +0.8
779,928 + GFF722 0.85 +0.4
779,928 + GFF722 0.85 +0.0
779,929 - GFF722 0.85 +0.2
779,929 - GFF722 0.85 +0.3
779,929 - GFF722 0.85 +0.1
779,929 - GFF722 0.85 -0.6
779,929 - GFF722 0.85 -1.5
779,929 - GFF722 0.85 +0.4
779,929 - GFF722 0.85 -0.1
780,169 + -0.5
780,169 + +1.3
780,169 + -1.3
780,169 + +0.6
780,170 - -0.6
780,170 - +0.0
780,170 - -1.4
780,284 + GFF723 0.31 +0.7
780,284 + GFF723 0.31 -0.1
780,285 - GFF723 0.32 -0.1
780,285 - GFF723 0.32 +0.2
780,285 - GFF723 0.32 -0.7
780,313 + GFF723 0.37 -0.9
780,313 + GFF723 0.37 -0.8
780,313 + GFF723 0.37 -1.0
780,538 + GFF723 0.81 +0.1
780,539 - GFF723 0.81 +1.8
780,539 - GFF723 0.81 -0.2
780,539 - GFF723 0.81 -1.1
780,589 + +0.6
780,589 + -2.0
780,590 - -2.7
780,590 - -0.2
780,590 - -0.3
780,590 - -1.7
780,927 + GFF724 0.30 -1.7
780,928 - GFF724 0.30 +0.1
781,410 + GFF724 0.79 -1.0
781,410 + GFF724 0.79 -0.5
781,410 + GFF724 0.79 +0.1
781,411 - GFF724 0.79 -0.5
781,411 - GFF724 0.79 -0.5
781,411 - GFF724 0.79 -1.0
781,411 - GFF724 0.79 -0.6
781,539 + -0.5
781,539 + -0.2
781,540 - -0.3
781,540 - -0.3
781,597 - +0.6
782,004 + GFF725 0.11 -0.1
782,005 - GFF725 0.11 -2.4
782,080 - GFF725 0.14 +1.6
782,208 + GFF725 0.20 -1.0
782,208 + GFF725 0.20 -2.6
782,208 + GFF725 0.20 +0.1
782,208 + GFF725 0.20 -2.3
782,209 - GFF725 0.20 -0.1
782,209 - GFF725 0.20 -0.5
782,358 + GFF725 0.26 -1.4
782,358 + GFF725 0.26 -0.3
782,358 + GFF725 0.26 +0.1
782,358 + GFF725 0.26 -0.3
782,358 + GFF725 0.26 +0.3
782,358 + GFF725 0.26 -0.6
782,358 + GFF725 0.26 -0.3
782,358 + GFF725 0.26 -1.0
782,359 - GFF725 0.26 +0.4
782,359 - GFF725 0.26 -0.4
782,382 + GFF725 0.26 -1.0
782,382 + GFF725 0.26 -0.1
782,382 + GFF725 0.26 -0.2
782,382 + GFF725 0.26 -0.3
782,382 + GFF725 0.26 -0.2
782,382 + GFF725 0.26 +0.6
782,382 + GFF725 0.26 -0.6
782,382 + GFF725 0.26 -0.1
782,382 + GFF725 0.26 -0.3
782,383 - GFF725 0.27 +1.3
782,383 - GFF725 0.27 -1.8
782,383 - GFF725 0.27 +0.3
782,383 - GFF725 0.27 -1.0
782,388 + GFF725 0.27 +0.9
782,388 + GFF725 0.27 -0.8
782,388 + GFF725 0.27 +0.4
782,388 + GFF725 0.27 +2.3
782,415 + GFF725 0.28 -1.5
782,415 + GFF725 0.28 -0.8
782,415 + GFF725 0.28 -0.1
782,416 - GFF725 0.28 +0.8
782,445 + GFF725 0.29 +0.1
782,445 + GFF725 0.29 +0.1
782,445 + GFF725 0.29 -0.1
782,445 + GFF725 0.29 -0.1
782,446 - GFF725 0.29 -0.9

Or see this region's nucleotide sequence