Strain Fitness in Variovorax sp. SCN45 around GFF6945

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
20,252	+		GFF6944	0.66	+0.2
20,253	-		GFF6944	0.66	-0.5
20,253	-		GFF6944	0.66	+0.8
20,253	-		GFF6944	0.66	+0.1
20,253	-		GFF6944	0.66	-1.9
20,361	-		GFF6944	0.70	+2.0
20,361	-		GFF6944	0.70	-0.8
20,380	+		GFF6944	0.71	+0.1
20,381	-		GFF6944	0.71	-0.7
20,424	-		GFF6944	0.73	+0.5
20,799	-		GFF6944	0.89	-0.5
20,837	+				-1.2
21,002	+				+1.2
21,002	+				-0.8
21,002	+				-0.4
21,002	+				+1.2
21,002	+				-0.2
21,003	-				+0.3
21,003	-				+0.2
21,003	-				-0.3
21,003	-				-0.4
21,003	-				-0.0
21,083	+				+0.6
21,083	+				+1.1
21,084	-				-1.2
21,106	+				-0.0
21,106	+				-0.4
21,130	+				-1.5
21,130	+				+0.8
21,146	+				-0.2
21,146	+				-0.4
21,147	-				+0.3
21,147	-				+0.2
21,207	+				-0.8
21,208	-				-0.2
21,229	+				+0.6
21,230	-				+0.3
21,230	-				-0.8
21,449	+		GFF6945	0.39	+0.4
21,449	+		GFF6945	0.39	+0.2
21,450	-		GFF6945	0.39	-1.0
21,450	-		GFF6945	0.39	-0.3
21,450	-		GFF6945	0.39	+0.1
21,463	+		GFF6945	0.41	+0.2
21,859	+				+1.0
21,936	+				+0.7
21,937	-				-0.4
21,937	-				+0.4
22,068	-				-0.7
22,068	-				+0.2
22,142	+		GFF6946	0.12	+0.0
22,155	-		GFF6946	0.13	+0.2
22,346	+		GFF6946	0.22	-1.5
22,616	+		GFF6946	0.35	-0.7
22,652	+		GFF6946	0.36	+1.1
22,652	+		GFF6946	0.36	+0.8
22,653	-		GFF6946	0.36	+0.3