Strain Fitness in Variovorax sp. SCN45 around GFF6867

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6867 and GFF6868 overlap by 4 nucleotidesGFF6868 and GFF6869 overlap by 11 nucleotides GFF6867 - no description, at 75 to 755 GFF6867 GFF6868 - SAM-dependent methyltransferase, at 752 to 1,504 GFF6868 GFF6869 - no description, at 1,494 to 1,964 GFF6869 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.088 kb on + strandat 0.088 kb on + strandat 0.088 kb on + strandat 0.088 kb on + strandat 0.088 kb on + strandat 0.088 kb on + strandat 0.088 kb on + strandat 0.088 kb on + strandat 0.089 kb on - strandat 0.089 kb on - strandat 0.089 kb on - strandat 0.089 kb on - strandat 0.089 kb on - strandat 0.142 kb on + strandat 0.143 kb on - strand, within GFF6867at 0.143 kb on - strand, within GFF6867at 0.178 kb on + strand, within GFF6867at 0.179 kb on - strand, within GFF6867at 0.200 kb on - strand, within GFF6867at 0.341 kb on - strand, within GFF6867at 0.341 kb on - strand, within GFF6867at 0.341 kb on - strand, within GFF6867at 0.341 kb on - strand, within GFF6867at 0.356 kb on - strand, within GFF6867at 0.356 kb on - strand, within GFF6867at 0.597 kb on + strand, within GFF6867at 0.597 kb on + strand, within GFF6867at 0.597 kb on + strand, within GFF6867at 0.597 kb on + strand, within GFF6867at 0.597 kb on + strand, within GFF6867at 0.597 kb on + strand, within GFF6867at 0.597 kb on + strand, within GFF6867at 0.597 kb on + strand, within GFF6867at 0.598 kb on - strand, within GFF6867at 0.598 kb on - strand, within GFF6867at 0.598 kb on - strand, within GFF6867at 0.649 kb on + strand, within GFF6867at 0.649 kb on + strand, within GFF6867at 0.650 kb on - strand, within GFF6867at 0.650 kb on - strand, within GFF6867at 0.650 kb on - strand, within GFF6867at 0.697 kb on + strandat 0.697 kb on + strandat 0.697 kb on + strandat 0.697 kb on + strandat 0.698 kb on - strandat 0.727 kb on + strandat 0.728 kb on - strandat 0.728 kb on - strandat 0.728 kb on - strandat 0.825 kb on + strandat 0.825 kb on + strandat 0.825 kb on + strandat 0.825 kb on + strandat 0.825 kb on + strandat 0.826 kb on - strandat 0.826 kb on - strandat 0.826 kb on - strandat 0.840 kb on + strand, within GFF6868at 0.840 kb on + strand, within GFF6868at 0.841 kb on - strand, within GFF6868at 0.841 kb on - strand, within GFF6868at 0.841 kb on - strand, within GFF6868at 0.965 kb on - strand, within GFF6868at 0.975 kb on + strand, within GFF6868at 0.976 kb on - strand, within GFF6868at 0.976 kb on - strand, within GFF6868at 0.976 kb on - strand, within GFF6868at 0.976 kb on - strand, within GFF6868at 1.194 kb on + strand, within GFF6868at 1.195 kb on - strand, within GFF6868at 1.195 kb on - strand, within GFF6868at 1.317 kb on + strand, within GFF6868at 1.318 kb on - strand, within GFF6868at 1.318 kb on - strand, within GFF6868at 1.318 kb on - strand, within GFF6868at 1.318 kb on - strand, within GFF6868at 1.318 kb on - strand, within GFF6868at 1.413 kb on + strand, within GFF6868at 1.413 kb on + strand, within GFF6868at 1.413 kb on + strand, within GFF6868at 1.413 kb on + strand, within GFF6868at 1.413 kb on + strand, within GFF6868at 1.413 kb on - strand, within GFF6868at 1.414 kb on - strand, within GFF6868at 1.414 kb on - strand, within GFF6868at 1.414 kb on - strand, within GFF6868at 1.414 kb on - strand, within GFF6868at 1.414 kb on - strand, within GFF6868at 1.443 kb on + strandat 1.443 kb on + strandat 1.443 kb on + strandat 1.443 kb on + strandat 1.443 kb on + strandat 1.449 kb on + strandat 1.449 kb on + strandat 1.450 kb on - strandat 1.485 kb on + strandat 1.485 kb on + strandat 1.485 kb on + strandat 1.486 kb on - strandat 1.539 kb on + strandat 1.539 kb on + strandat 1.539 kb on + strandat 1.539 kb on + strandat 1.539 kb on + strandat 1.539 kb on + strandat 1.539 kb on + strandat 1.539 kb on + strandat 1.539 kb on + strandat 1.539 kb on + strandat 1.539 kb on + strandat 1.540 kb on - strandat 1.540 kb on - strandat 1.540 kb on - strandat 1.540 kb on - strandat 1.540 kb on - strandat 1.540 kb on - strandat 1.540 kb on - strandat 1.540 kb on - strandat 1.540 kb on - strandat 1.540 kb on - strandat 1.540 kb on - strandat 1.585 kb on + strand, within GFF6869at 1.607 kb on + strand, within GFF6869at 1.608 kb on - strand, within GFF6869at 1.608 kb on - strand, within GFF6869at 1.608 kb on - strand, within GFF6869at 1.608 kb on - strand, within GFF6869at 1.608 kb on - strand, within GFF6869at 1.610 kb on + strand, within GFF6869at 1.610 kb on + strand, within GFF6869at 1.610 kb on + strand, within GFF6869at 1.610 kb on + strand, within GFF6869at 1.610 kb on + strand, within GFF6869at 1.707 kb on + strand, within GFF6869at 1.708 kb on - strand, within GFF6869at 1.717 kb on - strand, within GFF6869

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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88 + -0.5
88 + -0.9
88 + -0.9
88 + -1.3
88 + -0.1
88 + -0.5
88 + +0.5
88 + -0.0
89 - +0.4
89 - -0.1
89 - -0.2
89 - -0.8
89 - -1.8
142 + -0.8
143 - GFF6867 0.10 +1.1
143 - GFF6867 0.10 -1.2
178 + GFF6867 0.15 +0.2
179 - GFF6867 0.15 +0.1
200 - GFF6867 0.18 -0.3
341 - GFF6867 0.39 -0.9
341 - GFF6867 0.39 -1.6
341 - GFF6867 0.39 -0.9
341 - GFF6867 0.39 -0.2
356 - GFF6867 0.41 +0.2
356 - GFF6867 0.41 -0.1
597 + GFF6867 0.77 -0.7
597 + GFF6867 0.77 +0.1
597 + GFF6867 0.77 +0.1
597 + GFF6867 0.77 -0.2
597 + GFF6867 0.77 -0.5
597 + GFF6867 0.77 -0.2
597 + GFF6867 0.77 +0.0
597 + GFF6867 0.77 -0.9
598 - GFF6867 0.77 -1.2
598 - GFF6867 0.77 -0.7
598 - GFF6867 0.77 +0.5
649 + GFF6867 0.84 -1.1
649 + GFF6867 0.84 +0.8
650 - GFF6867 0.84 +0.1
650 - GFF6867 0.84 -0.9
650 - GFF6867 0.84 -1.8
697 + -0.5
697 + +0.8
697 + +0.3
697 + +0.3
698 - -3.5
727 + +0.6
728 - -0.3
728 - -0.2
728 - +0.9
825 + -2.2
825 + +0.6
825 + -0.3
825 + -0.0
825 + -1.1
826 - -0.8
826 - -0.2
826 - -0.6
840 + GFF6868 0.12 +0.6
840 + GFF6868 0.12 +0.2
841 - GFF6868 0.12 -2.9
841 - GFF6868 0.12 +1.8
841 - GFF6868 0.12 -0.7
965 - GFF6868 0.28 -1.4
975 + GFF6868 0.30 +0.0
976 - GFF6868 0.30 -0.8
976 - GFF6868 0.30 +0.8
976 - GFF6868 0.30 -0.2
976 - GFF6868 0.30 -2.4
1,194 + GFF6868 0.59 -1.5
1,195 - GFF6868 0.59 -0.2
1,195 - GFF6868 0.59 -1.1
1,317 + GFF6868 0.75 -1.2
1,318 - GFF6868 0.75 -0.4
1,318 - GFF6868 0.75 -1.7
1,318 - GFF6868 0.75 +1.8
1,318 - GFF6868 0.75 -1.3
1,318 - GFF6868 0.75 -0.5
1,413 + GFF6868 0.88 -1.2
1,413 + GFF6868 0.88 -0.2
1,413 + GFF6868 0.88 -0.3
1,413 + GFF6868 0.88 -1.2
1,413 + GFF6868 0.88 -0.0
1,413 - GFF6868 0.88 -0.2
1,414 - GFF6868 0.88 -1.0
1,414 - GFF6868 0.88 -0.5
1,414 - GFF6868 0.88 +0.8
1,414 - GFF6868 0.88 -0.2
1,414 - GFF6868 0.88 +0.4
1,443 + -0.2
1,443 + -0.2
1,443 + -1.8
1,443 + -2.6
1,443 + +0.8
1,449 + -0.2
1,449 + -0.4
1,450 - -1.7
1,485 + -0.8
1,485 + -1.7
1,485 + +0.8
1,486 - +1.4
1,539 + -1.0
1,539 + -0.9
1,539 + +0.8
1,539 + -0.5
1,539 + -0.8
1,539 + -0.4
1,539 + +0.1
1,539 + +0.6
1,539 + +0.8
1,539 + -1.9
1,539 + -0.7
1,540 - +0.2
1,540 - +0.6
1,540 - -0.7
1,540 - -0.2
1,540 - +1.8
1,540 - -0.0
1,540 - -0.8
1,540 - +1.8
1,540 - +0.2
1,540 - -0.9
1,540 - +0.1
1,585 + GFF6869 0.19 -0.9
1,607 + GFF6869 0.24 -1.0
1,608 - GFF6869 0.24 -2.0
1,608 - GFF6869 0.24 -0.1
1,608 - GFF6869 0.24 +2.4
1,608 - GFF6869 0.24 +1.8
1,608 - GFF6869 0.24 +1.8
1,610 + GFF6869 0.25 -1.1
1,610 + GFF6869 0.25 -1.8
1,610 + GFF6869 0.25 -0.2
1,610 + GFF6869 0.25 +1.5
1,610 + GFF6869 0.25 -2.3
1,707 + GFF6869 0.45 -0.3
1,708 - GFF6869 0.45 -1.1
1,717 - GFF6869 0.47 -1.0

Or see this region's nucleotide sequence