Strain Fitness in Variovorax sp. SCN45 around GFF6676

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
49,718	+				-1.2
49,718	+				-0.5
49,718	+				+1.0
49,718	+				+0.1
49,718	+				-0.4
49,718	+				+1.6
49,718	+				+0.3
49,718	+				+0.4
49,718	+				+0.2
49,718	+				-0.4
49,718	+				-1.2
49,718	+				-0.4
49,719	-				-0.2
49,719	-				-0.4
49,719	-				+0.3
49,719	-				-0.3
49,719	-				-0.9
49,889	+		GFF6675	0.20	-0.0
49,889	+		GFF6675	0.20	+0.6
49,889	+		GFF6675	0.20	-0.7
49,889	+		GFF6675	0.20	+0.1
49,889	+		GFF6675	0.20	-0.4
49,889	+		GFF6675	0.20	-0.6
49,889	+		GFF6675	0.20	-0.1
49,889	+		GFF6675	0.20	-0.8
49,889	+		GFF6675	0.20	-0.2
49,889	+		GFF6675	0.20	+0.2
49,889	+		GFF6675	0.20	-0.6
49,889	+		GFF6675	0.20	-1.5
49,889	+		GFF6675	0.20	+0.2
49,889	+		GFF6675	0.20	-0.4
49,889	+		GFF6675	0.20	+0.6
49,890	-		GFF6675	0.20	+1.4
49,890	-		GFF6675	0.20	-0.7
49,890	-		GFF6675	0.20	-0.3
49,890	-		GFF6675	0.20	-0.1
49,890	-		GFF6675	0.20	+1.4
49,890	-		GFF6675	0.20	-0.7
49,890	-		GFF6675	0.20	-0.2
49,890	-		GFF6675	0.20	-0.8
49,890	-		GFF6675	0.20	+0.4
49,890	-		GFF6675	0.20	-1.0
49,890	-		GFF6675	0.20	-0.6
49,890	-		GFF6675	0.20	-0.1
49,890	-		GFF6675	0.20	+0.6
49,890	-		GFF6675	0.20	+0.6
49,890	-		GFF6675	0.20	-0.1
49,890	-		GFF6675	0.20	-0.3
49,965	-		GFF6675	0.28	+0.3
49,965	-		GFF6675	0.28	-0.5
49,965	-		GFF6675	0.28	-0.3
49,965	-		GFF6675	0.28	-0.4
49,965	-		GFF6675	0.28	-1.0
49,979	+		GFF6675	0.30	-1.0
49,979	+		GFF6675	0.30	+0.3
49,979	+		GFF6675	0.30	+1.2
49,979	+		GFF6675	0.30	+0.1
49,979	+		GFF6675	0.30	+2.1
49,980	-		GFF6675	0.30	+1.4
49,980	-		GFF6675	0.30	-0.8
49,980	-		GFF6675	0.30	-1.5
49,980	-		GFF6675	0.30	-0.7
49,980	-		GFF6675	0.30	-0.0
49,980	-		GFF6675	0.30	+0.4
50,081	+		GFF6675	0.41	+0.2
50,186	+		GFF6675	0.52	-0.9
50,186	+		GFF6675	0.52	-1.0
50,390	+		GFF6675	0.74	+0.3
50,390	+		GFF6675	0.74	-0.7
50,390	+		GFF6675	0.74	+0.2
50,391	-		GFF6675	0.74	-0.9
50,555	+				+0.1
50,555	+				-1.7
50,555	+				+0.2
50,555	+				+0.1
50,555	+				+0.4
50,555	+				-0.6
50,556	+				-1.3
50,556	-				-3.0
50,556	-				+2.7
50,556	-				+1.8
50,556	-				-0.2
50,556	-				-1.6
50,674	+				+1.2
50,674	+				+0.0
50,674	+				-0.0
50,675	-				-0.6
50,675	-				-0.1
50,675	-				-1.0
50,675	-				-0.3
50,675	-				+0.0
50,752	+				-0.3
50,752	+				-0.6
50,752	+				-1.9
50,752	+				-1.0
50,752	+				-0.4
50,752	+				-0.0
50,753	-				-0.5
50,781	+				+1.1
50,781	+				-0.0
50,782	-				-0.4
50,782	-				-0.0
50,832	+				-0.7
50,832	+				-0.6
50,832	+				-0.1
50,832	+				-1.0
50,832	+				+0.7
50,832	+				-0.6
50,833	-				-0.8
50,904	-		GFF6676	0.16	-0.6
51,147	+		GFF6676	0.36	-0.3
51,147	+		GFF6676	0.36	-0.8
51,147	+		GFF6676	0.36	-2.4
51,147	+		GFF6676	0.36	-0.1
51,148	-		GFF6676	0.36	-1.2
51,148	-		GFF6676	0.36	+0.1
51,528	+		GFF6676	0.67	-0.6
51,529	-		GFF6676	0.67	+0.3
51,529	-		GFF6676	0.67	-2.0
51,529	-		GFF6676	0.67	+0.9
51,529	-		GFF6676	0.67	-0.8
51,529	-		GFF6676	0.67	-1.0
51,529	-		GFF6676	0.67	-0.9
51,529	-		GFF6676	0.67	-1.6
51,529	-		GFF6676	0.67	-0.7
51,537	+		GFF6676	0.68	-0.8
51,670	-		GFF6676	0.79	-0.6
51,720	+		GFF6676	0.83	-0.2
51,720	+		GFF6676	0.83	-1.0
51,720	+		GFF6676	0.83	-0.2
51,732	+		GFF6676	0.84	+1.7
51,733	-		GFF6676	0.84	+1.0
51,733	-		GFF6676	0.84	+0.3
51,747	+		GFF6676	0.86	-0.7
51,748	-		GFF6676	0.86	-0.7
51,748	-		GFF6676	0.86	+0.1
51,748	-		GFF6676	0.86	-0.0
51,748	-		GFF6676	0.86	-0.5
51,907	+				+0.7
51,907	+				-1.1
51,907	+				+0.1
51,907	+				-0.2
51,907	+				-1.9
51,907	+				+0.1
51,907	+				+0.4
51,908	-				-0.6
51,908	-				-1.1
51,908	-				-1.2
51,908	-				-0.3
51,908	-				-0.4
51,908	-				-0.0
51,908	-				+0.7
51,985	+				-0.5
51,986	-				-0.2
51,986	-				-1.7
51,986	-				-0.6
51,986	-				+0.2
52,038	+				-0.5
52,039	-				-0.4
52,173	+		GFF6677	0.11	+0.2
52,173	+		GFF6677	0.11	+0.6
52,173	+		GFF6677	0.11	-0.4
52,173	+		GFF6677	0.11	+0.4
52,174	-		GFF6677	0.11	-0.6
52,174	-		GFF6677	0.11	+0.2
52,174	-		GFF6677	0.11	+0.1
52,174	-		GFF6677	0.11	-0.2
52,279	+		GFF6677	0.23	+0.0
52,279	+		GFF6677	0.23	+0.1
52,279	+		GFF6677	0.23	-0.4
52,279	+		GFF6677	0.23	+1.1
52,279	+		GFF6677	0.23	-0.7
52,279	+		GFF6677	0.23	-0.8
52,279	+		GFF6677	0.23	-0.3
52,280	-		GFF6677	0.23	-0.5
52,280	-		GFF6677	0.23	-1.8
52,280	-		GFF6677	0.23	-0.6
52,309	+		GFF6677	0.26	+0.5
52,309	+		GFF6677	0.26	+0.8
52,309	+		GFF6677	0.26	+0.1
52,309	+		GFF6677	0.26	-1.4
52,309	+		GFF6677	0.26	-0.4
52,309	+		GFF6677	0.26	-0.5
52,309	+		GFF6677	0.26	-0.7
52,309	+		GFF6677	0.26	-1.2
52,309	+		GFF6677	0.26	-0.2
52,309	+		GFF6677	0.26	-0.5
52,309	+		GFF6677	0.26	-0.1
52,310	-		GFF6677	0.26	-0.3
52,310	-		GFF6677	0.26	-0.7
52,310	-		GFF6677	0.26	-1.7
52,310	-		GFF6677	0.26	-0.8
52,310	-		GFF6677	0.26	+0.1
52,310	-		GFF6677	0.26	-0.8
52,519	+		GFF6677	0.49	-0.3
52,520	-		GFF6677	0.49	-0.4
52,549	+		GFF6677	0.52	-2.0
52,549	+		GFF6677	0.52	-0.3
52,550	-		GFF6677	0.53	+0.4
52,550	-		GFF6677	0.53	-1.3
52,550	-		GFF6677	0.53	-0.8
52,570	+		GFF6677	0.55	-1.0
52,570	+		GFF6677	0.55	+0.7
52,570	+		GFF6677	0.55	+0.5
52,571	-		GFF6677	0.55	-0.2
52,571	-		GFF6677	0.55	+0.8
52,571	-		GFF6677	0.55	+0.3
52,571	-		GFF6677	0.55	-1.1
52,576	+		GFF6677	0.55	-0.8
52,577	-		GFF6677	0.55	-0.2
52,577	-		GFF6677	0.55	+0.0
52,609	+		GFF6677	0.59	-1.6
52,630	+		GFF6677	0.61	-1.0
52,630	+		GFF6677	0.61	+0.1
52,630	+		GFF6677	0.61	-0.5
52,630	+		GFF6677	0.61	-2.0
52,630	+		GFF6677	0.61	-0.7
52,630	+		GFF6677	0.61	-0.6
52,630	+		GFF6677	0.61	+1.8
52,631	-		GFF6677	0.61	+0.8
52,631	-		GFF6677	0.61	+0.1
52,631	-		GFF6677	0.61	-0.6
52,631	-		GFF6677	0.61	-0.3