Strain Fitness in Variovorax sp. SCN45 around GFF657

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF656 and GFF657 are separated by 253 nucleotidesGFF657 and GFF658 are separated by 264 nucleotides GFF656 - macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides, at 706,689 to 708,935 GFF656 GFF657 - no description, at 709,189 to 709,365 GFF657 GFF658 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 709,630 to 710,646 GFF658 Position (kb) 709 710Strain fitness (log2 ratio) -2 -1 0 1 2at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.218 kb on - strand, within GFF656at 708.218 kb on - strand, within GFF656at 708.218 kb on - strand, within GFF656at 708.218 kb on - strand, within GFF656at 708.218 kb on - strand, within GFF656at 708.218 kb on - strand, within GFF656at 708.218 kb on - strand, within GFF656at 708.394 kb on + strand, within GFF656at 708.394 kb on + strand, within GFF656at 708.394 kb on + strand, within GFF656at 708.395 kb on - strand, within GFF656at 708.395 kb on - strand, within GFF656at 708.643 kb on + strand, within GFF656at 708.643 kb on + strand, within GFF656at 708.643 kb on + strand, within GFF656at 708.643 kb on + strand, within GFF656at 708.643 kb on + strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.753 kb on - strandat 708.949 kb on + strandat 709.117 kb on + strandat 709.118 kb on - strandat 709.118 kb on - strandat 709.118 kb on - strandat 709.364 kb on - strandat 709.429 kb on + strandat 709.470 kb on + strandat 709.471 kb on - strandat 709.518 kb on + strandat 709.518 kb on + strandat 709.518 kb on + strandat 709.519 kb on - strandat 709.519 kb on - strandat 709.553 kb on + strandat 709.554 kb on - strandat 709.554 kb on - strandat 709.554 kb on - strandat 709.554 kb on - strandat 709.631 kb on + strandat 709.631 kb on + strandat 709.789 kb on - strand, within GFF658at 710.240 kb on + strand, within GFF658at 710.240 kb on + strand, within GFF658at 710.240 kb on + strand, within GFF658at 710.240 kb on + strand, within GFF658at 710.241 kb on - strand, within GFF658at 710.241 kb on - strand, within GFF658at 710.241 kb on - strand, within GFF658at 710.241 kb on - strand, within GFF658at 710.241 kb on - strand, within GFF658at 710.241 kb on - strand, within GFF658

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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708,217 + GFF656 0.68 -0.1
708,217 + GFF656 0.68 -0.7
708,217 + GFF656 0.68 +0.4
708,217 + GFF656 0.68 +0.5
708,217 + GFF656 0.68 +0.1
708,217 + GFF656 0.68 +1.2
708,217 + GFF656 0.68 -0.5
708,217 + GFF656 0.68 +0.0
708,217 + GFF656 0.68 +0.9
708,218 - GFF656 0.68 -0.8
708,218 - GFF656 0.68 +0.1
708,218 - GFF656 0.68 -0.7
708,218 - GFF656 0.68 -0.5
708,218 - GFF656 0.68 -0.1
708,218 - GFF656 0.68 -0.3
708,218 - GFF656 0.68 +0.0
708,394 + GFF656 0.76 +1.3
708,394 + GFF656 0.76 +0.7
708,394 + GFF656 0.76 -0.4
708,395 - GFF656 0.76 -0.6
708,395 - GFF656 0.76 -0.5
708,643 + GFF656 0.87 +1.8
708,643 + GFF656 0.87 -0.8
708,643 + GFF656 0.87 -1.8
708,643 + GFF656 0.87 +0.5
708,643 + GFF656 0.87 -0.3
708,644 - GFF656 0.87 -0.2
708,644 - GFF656 0.87 -0.3
708,644 - GFF656 0.87 -0.8
708,644 - GFF656 0.87 -1.2
708,644 - GFF656 0.87 +1.3
708,644 - GFF656 0.87 +1.3
708,644 - GFF656 0.87 +0.3
708,644 - GFF656 0.87 +0.4
708,753 - -0.7
708,949 + -0.3
709,117 + +0.2
709,118 - -0.4
709,118 - +0.1
709,118 - +0.3
709,364 - +0.3
709,429 + +0.1
709,470 + -0.8
709,471 - -0.5
709,518 + -0.3
709,518 + +0.0
709,518 + +0.0
709,519 - -1.0
709,519 - -2.4
709,553 + +0.1
709,554 - -0.7
709,554 - -0.7
709,554 - -0.1
709,554 - +0.1
709,631 + -1.0
709,631 + +0.3
709,789 - GFF658 0.16 -1.0
710,240 + GFF658 0.60 +0.7
710,240 + GFF658 0.60 -0.3
710,240 + GFF658 0.60 -1.5
710,240 + GFF658 0.60 -1.8
710,241 - GFF658 0.60 -0.1
710,241 - GFF658 0.60 -0.8
710,241 - GFF658 0.60 +0.2
710,241 - GFF658 0.60 +1.2
710,241 - GFF658 0.60 -0.6
710,241 - GFF658 0.60 -1.0

Or see this region's nucleotide sequence