Strain Fitness in Variovorax sp. SCN45 around GFF648

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF646 and GFF647 are separated by 148 nucleotidesGFF647 and GFF648 are separated by 5 nucleotidesGFF648 and GFF649 are separated by 13 nucleotides GFF646 - no description, at 696,205 to 696,552 GFF646 GFF647 - Two-component system response regulator QseB, at 696,701 to 697,390 GFF647 GFF648 - integral membrane sensor signal transduction histidine kinase, at 697,396 to 698,895 GFF648 GFF649 - no description, at 698,909 to 701,443 GFF649 Position (kb) 697 698 699Strain fitness (log2 ratio) -2 -1 0 1 2at 696.539 kb on + strandat 696.539 kb on + strandat 696.540 kb on - strandat 696.688 kb on + strandat 696.688 kb on + strandat 696.689 kb on - strandat 696.689 kb on - strandat 696.992 kb on + strand, within GFF647at 696.992 kb on + strand, within GFF647at 696.993 kb on - strand, within GFF647at 696.993 kb on - strand, within GFF647at 697.059 kb on - strand, within GFF647at 697.173 kb on + strand, within GFF647at 697.174 kb on - strand, within GFF647at 697.319 kb on + strand, within GFF647at 697.319 kb on + strand, within GFF647at 697.319 kb on + strand, within GFF647at 697.320 kb on - strand, within GFF647at 697.320 kb on - strand, within GFF647at 697.320 kb on - strand, within GFF647at 697.355 kb on + strandat 697.356 kb on - strandat 697.356 kb on - strandat 697.651 kb on + strand, within GFF648at 697.939 kb on + strand, within GFF648at 697.942 kb on + strand, within GFF648at 697.942 kb on + strand, within GFF648at 697.943 kb on - strand, within GFF648at 697.943 kb on - strand, within GFF648at 697.943 kb on - strand, within GFF648at 697.943 kb on - strand, within GFF648at 697.943 kb on - strand, within GFF648at 697.943 kb on - strand, within GFF648at 697.943 kb on - strand, within GFF648at 697.943 kb on - strand, within GFF648at 698.554 kb on + strand, within GFF648at 698.555 kb on - strand, within GFF648at 698.555 kb on - strand, within GFF648at 698.555 kb on - strand, within GFF648at 698.555 kb on - strand, within GFF648at 698.910 kb on + strandat 698.910 kb on + strandat 698.911 kb on - strandat 699.205 kb on - strand, within GFF649at 699.205 kb on - strand, within GFF649at 699.205 kb on - strand, within GFF649at 699.357 kb on + strand, within GFF649at 699.357 kb on + strand, within GFF649at 699.357 kb on + strand, within GFF649at 699.357 kb on + strand, within GFF649at 699.358 kb on - strand, within GFF649at 699.358 kb on - strand, within GFF649at 699.373 kb on + strand, within GFF649at 699.373 kb on + strand, within GFF649at 699.374 kb on - strand, within GFF649at 699.393 kb on + strand, within GFF649at 699.393 kb on + strand, within GFF649at 699.394 kb on - strand, within GFF649at 699.394 kb on - strand, within GFF649at 699.394 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.433 kb on - strand, within GFF649at 699.558 kb on + strand, within GFF649at 699.558 kb on + strand, within GFF649at 699.558 kb on + strand, within GFF649at 699.558 kb on + strand, within GFF649at 699.558 kb on + strand, within GFF649at 699.558 kb on + strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.559 kb on - strand, within GFF649at 699.559 kb on - strand, within GFF649

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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696,539 + -0.7
696,539 + +0.0
696,540 - +0.8
696,688 + -0.6
696,688 + -0.4
696,689 - -0.6
696,689 - -0.1
696,992 + GFF647 0.42 +0.2
696,992 + GFF647 0.42 -0.7
696,993 - GFF647 0.42 -0.6
696,993 - GFF647 0.42 -0.2
697,059 - GFF647 0.52 -0.7
697,173 + GFF647 0.68 -0.3
697,174 - GFF647 0.69 -0.8
697,319 + GFF647 0.90 -0.3
697,319 + GFF647 0.90 +0.3
697,319 + GFF647 0.90 -0.4
697,320 - GFF647 0.90 -1.0
697,320 - GFF647 0.90 +0.3
697,320 - GFF647 0.90 -0.3
697,355 + -0.6
697,356 - -0.3
697,356 - -0.4
697,651 + GFF648 0.17 -1.3
697,939 + GFF648 0.36 -0.4
697,942 + GFF648 0.36 -0.9
697,942 + GFF648 0.36 -0.4
697,943 - GFF648 0.36 -2.0
697,943 - GFF648 0.36 -0.4
697,943 - GFF648 0.36 -1.5
697,943 - GFF648 0.36 +0.1
697,943 - GFF648 0.36 -0.7
697,943 - GFF648 0.36 -0.4
697,943 - GFF648 0.36 -0.5
697,943 - GFF648 0.36 +0.8
698,554 + GFF648 0.77 -0.8
698,555 - GFF648 0.77 -0.3
698,555 - GFF648 0.77 +0.7
698,555 - GFF648 0.77 -0.7
698,555 - GFF648 0.77 -0.6
698,910 + -0.1
698,910 + -1.0
698,911 - -0.3
699,205 - GFF649 0.12 -0.3
699,205 - GFF649 0.12 +0.7
699,205 - GFF649 0.12 -0.9
699,357 + GFF649 0.18 +0.3
699,357 + GFF649 0.18 -0.3
699,357 + GFF649 0.18 -0.9
699,357 + GFF649 0.18 +0.3
699,358 - GFF649 0.18 -1.5
699,358 - GFF649 0.18 +0.2
699,373 + GFF649 0.18 +0.0
699,373 + GFF649 0.18 +1.9
699,374 - GFF649 0.18 -0.6
699,393 + GFF649 0.19 -0.3
699,393 + GFF649 0.19 -0.2
699,394 - GFF649 0.19 +0.1
699,394 - GFF649 0.19 -0.0
699,394 - GFF649 0.19 -1.7
699,433 - GFF649 0.21 +0.0
699,433 - GFF649 0.21 -1.7
699,433 - GFF649 0.21 +0.2
699,433 - GFF649 0.21 -0.9
699,433 - GFF649 0.21 -1.1
699,433 - GFF649 0.21 +0.3
699,433 - GFF649 0.21 -0.7
699,433 - GFF649 0.21 +0.1
699,558 + GFF649 0.26 +0.6
699,558 + GFF649 0.26 -0.3
699,558 + GFF649 0.26 +0.4
699,558 + GFF649 0.26 +1.0
699,558 + GFF649 0.26 -2.4
699,558 + GFF649 0.26 -2.1
699,559 - GFF649 0.26 +0.8
699,559 - GFF649 0.26 -1.3
699,559 - GFF649 0.26 -0.8
699,559 - GFF649 0.26 +0.7
699,559 - GFF649 0.26 -0.0
699,559 - GFF649 0.26 +1.0
699,559 - GFF649 0.26 +0.9
699,559 - GFF649 0.26 +1.3

Or see this region's nucleotide sequence