Strain Fitness in Variovorax sp. SCN45 around GFF6402

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6401 and GFF6402 overlap by 4 nucleotidesGFF6402 and GFF6403 are separated by 27 nucleotidesGFF6403 and GFF6404 are separated by 148 nucleotides GFF6401 - Formiminoglutamic iminohydrolase (EC 3.5.3.13), at 75,354 to 76,736 GFF6401 GFF6402 - Imidazolonepropionase (EC 3.5.2.7), at 76,733 to 77,959 GFF6402 GFF6403 - Stresses-induced protein Ves (HutD), at 77,987 to 78,559 GFF6403 GFF6404 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 78,708 to 79,376 GFF6404 Position (kb) 76 77 78Strain fitness (log2 ratio) -2 -1 0 1 2 3at 75.883 kb on + strand, within GFF6401at 75.883 kb on + strand, within GFF6401at 75.884 kb on - strand, within GFF6401at 75.884 kb on - strand, within GFF6401at 75.890 kb on - strand, within GFF6401at 76.255 kb on + strand, within GFF6401at 76.255 kb on + strand, within GFF6401at 76.255 kb on + strand, within GFF6401at 76.339 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.370 kb on - strand, within GFF6401at 76.370 kb on - strand, within GFF6401at 76.370 kb on - strand, within GFF6401at 76.370 kb on - strand, within GFF6401at 76.417 kb on + strand, within GFF6401at 76.418 kb on - strand, within GFF6401at 76.474 kb on + strand, within GFF6401at 76.474 kb on + strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.804 kb on - strandat 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.094 kb on + strand, within GFF6402at 77.095 kb on - strand, within GFF6402at 77.095 kb on - strand, within GFF6402at 77.095 kb on - strand, within GFF6402at 77.194 kb on - strand, within GFF6402at 77.397 kb on + strand, within GFF6402at 77.397 kb on + strand, within GFF6402at 77.397 kb on + strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.472 kb on + strand, within GFF6402at 77.561 kb on + strand, within GFF6402at 77.561 kb on + strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.685 kb on + strand, within GFF6402at 77.685 kb on + strand, within GFF6402at 77.685 kb on + strand, within GFF6402at 77.686 kb on - strand, within GFF6402at 77.736 kb on + strand, within GFF6402at 77.737 kb on - strand, within GFF6402at 77.737 kb on - strand, within GFF6402at 78.299 kb on + strand, within GFF6403at 78.299 kb on + strand, within GFF6403at 78.694 kb on + strandat 78.694 kb on + strandat 78.694 kb on + strandat 78.694 kb on + strandat 78.694 kb on + strandat 78.694 kb on + strandat 78.694 kb on + strandat 78.695 kb on - strandat 78.695 kb on - strandat 78.695 kb on - strandat 78.787 kb on + strand, within GFF6404at 78.787 kb on + strand, within GFF6404at 78.787 kb on + strand, within GFF6404at 78.787 kb on + strand, within GFF6404at 78.787 kb on + strand, within GFF6404at 78.788 kb on - strand, within GFF6404at 78.788 kb on - strand, within GFF6404at 78.788 kb on - strand, within GFF6404at 78.788 kb on - strand, within GFF6404at 78.808 kb on + strand, within GFF6404at 78.808 kb on + strand, within GFF6404at 78.808 kb on + strand, within GFF6404at 78.809 kb on - strand, within GFF6404at 78.809 kb on - strand, within GFF6404at 78.809 kb on - strand, within GFF6404at 78.809 kb on - strand, within GFF6404at 78.809 kb on - strand, within GFF6404at 78.927 kb on + strand, within GFF6404

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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75,883 + GFF6401 0.38 +0.3
75,883 + GFF6401 0.38 +0.1
75,884 - GFF6401 0.38 +3.2
75,884 - GFF6401 0.38 -0.7
75,890 - GFF6401 0.39 +0.2
76,255 + GFF6401 0.65 +0.2
76,255 + GFF6401 0.65 -1.0
76,255 + GFF6401 0.65 -0.9
76,339 + GFF6401 0.71 -0.7
76,369 + GFF6401 0.73 +0.1
76,369 + GFF6401 0.73 -0.6
76,369 + GFF6401 0.73 +0.0
76,369 + GFF6401 0.73 +0.9
76,369 + GFF6401 0.73 +0.3
76,370 - GFF6401 0.73 +0.2
76,370 - GFF6401 0.73 -0.9
76,370 - GFF6401 0.73 -1.7
76,370 - GFF6401 0.73 +0.7
76,417 + GFF6401 0.77 -1.0
76,418 - GFF6401 0.77 -0.8
76,474 + GFF6401 0.81 -0.5
76,474 + GFF6401 0.81 +0.2
76,475 - GFF6401 0.81 -0.0
76,475 - GFF6401 0.81 +1.0
76,475 - GFF6401 0.81 +0.3
76,475 - GFF6401 0.81 +1.5
76,475 - GFF6401 0.81 +0.1
76,475 - GFF6401 0.81 -0.4
76,804 - +0.4
77,091 + GFF6402 0.29 -0.4
77,091 + GFF6402 0.29 +0.5
77,091 + GFF6402 0.29 +0.1
77,091 + GFF6402 0.29 -0.3
77,091 + GFF6402 0.29 +0.1
77,091 + GFF6402 0.29 +1.7
77,091 + GFF6402 0.29 -0.4
77,092 - GFF6402 0.29 +1.0
77,092 - GFF6402 0.29 -0.4
77,092 - GFF6402 0.29 -0.5
77,092 - GFF6402 0.29 -0.4
77,092 - GFF6402 0.29 +0.7
77,092 - GFF6402 0.29 +1.2
77,092 - GFF6402 0.29 +0.4
77,092 - GFF6402 0.29 +1.0
77,092 - GFF6402 0.29 -1.0
77,094 + GFF6402 0.29 -0.2
77,095 - GFF6402 0.30 +0.7
77,095 - GFF6402 0.30 -0.7
77,095 - GFF6402 0.30 -0.2
77,194 - GFF6402 0.38 -0.5
77,397 + GFF6402 0.54 -0.4
77,397 + GFF6402 0.54 -0.6
77,397 + GFF6402 0.54 -0.4
77,398 - GFF6402 0.54 -0.2
77,398 - GFF6402 0.54 -0.3
77,398 - GFF6402 0.54 -0.1
77,398 - GFF6402 0.54 -0.3
77,398 - GFF6402 0.54 -0.7
77,398 - GFF6402 0.54 +0.3
77,398 - GFF6402 0.54 -0.0
77,398 - GFF6402 0.54 +0.4
77,472 + GFF6402 0.60 -1.0
77,561 + GFF6402 0.67 +0.1
77,561 + GFF6402 0.67 -0.8
77,562 - GFF6402 0.68 +0.9
77,562 - GFF6402 0.68 -0.8
77,562 - GFF6402 0.68 +1.6
77,562 - GFF6402 0.68 +1.0
77,562 - GFF6402 0.68 -1.3
77,562 - GFF6402 0.68 -0.7
77,562 - GFF6402 0.68 +0.4
77,562 - GFF6402 0.68 +0.1
77,685 + GFF6402 0.78 -0.4
77,685 + GFF6402 0.78 -0.2
77,685 + GFF6402 0.78 -0.7
77,686 - GFF6402 0.78 +0.1
77,736 + GFF6402 0.82 +0.3
77,737 - GFF6402 0.82 -0.2
77,737 - GFF6402 0.82 -2.0
78,299 + GFF6403 0.54 -0.5
78,299 + GFF6403 0.54 -1.0
78,694 + -0.8
78,694 + -1.0
78,694 + +1.0
78,694 + -0.2
78,694 + -1.9
78,694 + +0.2
78,694 + -1.2
78,695 - +0.3
78,695 - -0.1
78,695 - -0.2
78,787 + GFF6404 0.12 -0.3
78,787 + GFF6404 0.12 -0.0
78,787 + GFF6404 0.12 +1.0
78,787 + GFF6404 0.12 +0.2
78,787 + GFF6404 0.12 +0.4
78,788 - GFF6404 0.12 +0.1
78,788 - GFF6404 0.12 -0.1
78,788 - GFF6404 0.12 -0.9
78,788 - GFF6404 0.12 -0.0
78,808 + GFF6404 0.15 -0.4
78,808 + GFF6404 0.15 -1.0
78,808 + GFF6404 0.15 +0.4
78,809 - GFF6404 0.15 +0.3
78,809 - GFF6404 0.15 +1.5
78,809 - GFF6404 0.15 +0.2
78,809 - GFF6404 0.15 -0.0
78,809 - GFF6404 0.15 +0.7
78,927 + GFF6404 0.33 -0.5

Or see this region's nucleotide sequence