Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6243 and GFF6244 are separated by 75 nucleotides GFF6244 and GFF6245 are separated by 160 nucleotides GFF6245 and GFF6246 overlap by 11 nucleotides
GFF6243 - Ku domain protein, at 37,322 to 38,293
GFF6243
GFF6244 - Predicted deacylase, at 38,369 to 39,373
GFF6244
GFF6245 - no description, at 39,534 to 39,788
GFF6245
GFF6246 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 39,778 to 40,473
GFF6246
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 37.903 kb on - strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.936 kb on - strand, within GFF6243 at 37.936 kb on - strand, within GFF6243 at 37.936 kb on - strand, within GFF6243 at 37.938 kb on + strand, within GFF6243 at 37.938 kb on + strand, within GFF6243 at 37.939 kb on - strand, within GFF6243 at 37.953 kb on + strand, within GFF6243 at 38.019 kb on + strand, within GFF6243 at 38.055 kb on + strand, within GFF6243 at 38.055 kb on + strand, within GFF6243 at 38.055 kb on + strand, within GFF6243 at 38.056 kb on - strand, within GFF6243 at 38.056 kb on - strand, within GFF6243 at 38.056 kb on - strand, within GFF6243 at 38.056 kb on - strand, within GFF6243 at 38.071 kb on - strand, within GFF6243 at 38.103 kb on - strand, within GFF6243 at 38.103 kb on - strand, within GFF6243 at 38.136 kb on + strand, within GFF6243 at 38.136 kb on + strand, within GFF6243 at 38.136 kb on + strand, within GFF6243 at 38.205 kb on + strand at 38.205 kb on + strand at 38.206 kb on - strand at 38.346 kb on + strand at 38.346 kb on + strand at 38.346 kb on + strand at 38.346 kb on + strand at 38.346 kb on + strand at 38.347 kb on - strand at 38.424 kb on + strand at 38.424 kb on + strand at 38.424 kb on + strand at 38.424 kb on + strand at 38.425 kb on - strand at 38.425 kb on - strand at 38.425 kb on - strand at 38.781 kb on + strand, within GFF6244 at 38.782 kb on - strand, within GFF6244 at 38.782 kb on - strand, within GFF6244 at 38.782 kb on - strand, within GFF6244 at 38.782 kb on - strand, within GFF6244 at 38.782 kb on - strand, within GFF6244 at 38.782 kb on - strand, within GFF6244 at 38.862 kb on + strand, within GFF6244 at 38.862 kb on + strand, within GFF6244 at 38.862 kb on + strand, within GFF6244 at 38.862 kb on + strand, within GFF6244 at 38.862 kb on + strand, within GFF6244 at 38.862 kb on + strand, within GFF6244 at 38.863 kb on - strand, within GFF6244 at 38.863 kb on - strand, within GFF6244 at 38.863 kb on - strand, within GFF6244 at 38.863 kb on - strand, within GFF6244 at 38.863 kb on - strand, within GFF6244 at 38.863 kb on - strand, within GFF6244 at 39.079 kb on - strand, within GFF6244 at 39.079 kb on - strand, within GFF6244 at 39.383 kb on - strand at 39.428 kb on - strand at 39.428 kb on - strand at 39.428 kb on - strand at 39.452 kb on + strand at 39.475 kb on + strand at 39.475 kb on + strand at 39.475 kb on + strand at 39.475 kb on + strand at 39.475 kb on + strand at 39.476 kb on - strand at 39.476 kb on - strand at 39.476 kb on - strand at 39.762 kb on + strand, within GFF6245 at 39.762 kb on + strand, within GFF6245 at 39.833 kb on + strand at 39.834 kb on - strand at 39.834 kb on - strand at 40.193 kb on + strand, within GFF6246 at 40.193 kb on + strand, within GFF6246 at 40.193 kb on + strand, within GFF6246 at 40.193 kb on + strand, within GFF6246 at 40.193 kb on + strand, within GFF6246 at 40.194 kb on - strand, within GFF6246 at 40.194 kb on - strand, within GFF6246 at 40.194 kb on - strand, within GFF6246 at 40.296 kb on - strand, within GFF6246 at 40.346 kb on + strand, within GFF6246 at 40.346 kb on + strand, within GFF6246 at 40.346 kb on + strand, within GFF6246 at 40.346 kb on + strand, within GFF6246 at 40.346 kb on + strand, within GFF6246 at 40.346 kb on + strand, within GFF6246 at 40.347 kb on - strand, within GFF6246 at 40.347 kb on - strand, within GFF6246 at 40.347 kb on - strand, within GFF6246 at 40.347 kb on - strand, within GFF6246 at 40.347 kb on - strand, within GFF6246 at 40.347 kb on - strand, within GFF6246 at 40.347 kb on - strand, within GFF6246
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 37,903 - GFF6243 0.60 +0.0 37,935 + GFF6243 0.63 -1.1 37,935 + GFF6243 0.63 +0.7 37,935 + GFF6243 0.63 +0.4 37,935 + GFF6243 0.63 -2.1 37,935 + GFF6243 0.63 +0.0 37,935 + GFF6243 0.63 +0.1 37,935 + GFF6243 0.63 +0.2 37,935 + GFF6243 0.63 -0.2 37,935 + GFF6243 0.63 -3.1 37,936 - GFF6243 0.63 +0.4 37,936 - GFF6243 0.63 +0.3 37,936 - GFF6243 0.63 -0.3 37,938 + GFF6243 0.63 -0.1 37,938 + GFF6243 0.63 -0.4 37,939 - GFF6243 0.63 +0.6 37,953 + GFF6243 0.65 +0.1 38,019 + GFF6243 0.72 -1.9 38,055 + GFF6243 0.75 +0.3 38,055 + GFF6243 0.75 -0.3 38,055 + GFF6243 0.75 +1.0 38,056 - GFF6243 0.76 +0.0 38,056 - GFF6243 0.76 +0.9 38,056 - GFF6243 0.76 +0.6 38,056 - GFF6243 0.76 -1.0 38,071 - GFF6243 0.77 -0.4 38,103 - GFF6243 0.80 -0.3 38,103 - GFF6243 0.80 +1.4 38,136 + GFF6243 0.84 +0.7 38,136 + GFF6243 0.84 +0.6 38,136 + GFF6243 0.84 +0.9 38,205 + -0.9 38,205 + +0.0 38,206 - +0.1 38,346 + -0.7 38,346 + -0.3 38,346 + -0.8 38,346 + -0.3 38,346 + +0.7 38,347 - -0.1 38,424 + -0.1 38,424 + -0.3 38,424 + -0.5 38,424 + +0.2 38,425 - -0.0 38,425 - -1.0 38,425 - +0.3 38,781 + GFF6244 0.41 +0.1 38,782 - GFF6244 0.41 -1.8 38,782 - GFF6244 0.41 +1.1 38,782 - GFF6244 0.41 +1.1 38,782 - GFF6244 0.41 -0.1 38,782 - GFF6244 0.41 -2.2 38,782 - GFF6244 0.41 -0.6 38,862 + GFF6244 0.49 -2.0 38,862 + GFF6244 0.49 +2.5 38,862 + GFF6244 0.49 +0.3 38,862 + GFF6244 0.49 -0.7 38,862 + GFF6244 0.49 +0.6 38,862 + GFF6244 0.49 -0.1 38,863 - GFF6244 0.49 +0.2 38,863 - GFF6244 0.49 -0.8 38,863 - GFF6244 0.49 +0.9 38,863 - GFF6244 0.49 +0.0 38,863 - GFF6244 0.49 -0.0 38,863 - GFF6244 0.49 -0.8 39,079 - GFF6244 0.71 -0.2 39,079 - GFF6244 0.71 -0.7 39,383 - -0.3 39,428 - -0.3 39,428 - +0.1 39,428 - -0.2 39,452 + +0.1 39,475 + +0.3 39,475 + -0.8 39,475 + -0.1 39,475 + -1.0 39,475 + -0.8 39,476 - +0.4 39,476 - -0.4 39,476 - -0.8 39,762 + GFF6245 0.89 -0.7 39,762 + GFF6245 0.89 -0.7 39,833 + -1.6 39,834 - -0.3 39,834 - -2.0 40,193 + GFF6246 0.60 -0.3 40,193 + GFF6246 0.60 -0.0 40,193 + GFF6246 0.60 -2.0 40,193 + GFF6246 0.60 -0.3 40,193 + GFF6246 0.60 -1.9 40,194 - GFF6246 0.60 -1.1 40,194 - GFF6246 0.60 +0.3 40,194 - GFF6246 0.60 -0.5 40,296 - GFF6246 0.74 -0.5 40,346 + GFF6246 0.82 -0.7 40,346 + GFF6246 0.82 -1.3 40,346 + GFF6246 0.82 -1.1 40,346 + GFF6246 0.82 +0.6 40,346 + GFF6246 0.82 -0.7 40,346 + GFF6246 0.82 -1.1 40,347 - GFF6246 0.82 -1.2 40,347 - GFF6246 0.82 -2.4 40,347 - GFF6246 0.82 -0.6 40,347 - GFF6246 0.82 -1.3 40,347 - GFF6246 0.82 +0.9 40,347 - GFF6246 0.82 -0.5 40,347 - GFF6246 0.82 -0.8
Or see this region's nucleotide sequence